Predicted mutation | |||||||
---|---|---|---|---|---|---|---|
evidence | seq id | position | mutation | freq | annotation | gene | description |
RA | minE | 2,671,600 | C→T | 72.0% | P192L (CCG→CTG) | malQ → | 4‑alpha‑glucanotransferase |
Read alignment evidence... | |||||||||||
---|---|---|---|---|---|---|---|---|---|---|---|
seq id | position | ref | new | freq | score (cons/poly) | reads | annotation | genes | product | ||
* | minE | 2,671,600 | 0 | C | T | 72.0% | 29.4 / 9.8 | 32 | P192L (CCG→CTG) | malQ | 4‑alpha‑glucanotransferase |
Reads supporting (aligned to +/- strand): ref base C (4/5); new base T (20/3); total (24/8) | |||||||||||
Fisher's exact test for biased strand distribution p-value = 2.33e-02 | |||||||||||
Kolmogorov-Smirnov test that lower quality scores support variant p-value = 1.00e+00 |
ATGCTGGTGGATGTGGCAAAACGTGGCGGGTCGTTCATTGGCCTGAACCCGATTCATGCGCTCTATCCGGCAAATCCGGAGAGCGCCAGCCCATACAGCCCGTCTTCTCGCCGTTGGCTGAA > minE/2671533‑2671654 | aTGCTGGTGGATGTGGCAAAACGTGGCGGGTCGTTCATTGGCCTGAACCCGATTCATGCGCTCTATcc > 1:1206531/1‑68 (MQ=255) aTGCTGGTGGATGTGGCAAAACGTGGCGGGTCGTTCATTGGCCTGAACCCGATTCATGCGCTCTATcc > 1:2765836/1‑68 (MQ=255) aTGCTGGTGGATGTGGCAAAACGTGGCGGGTCGTTCATTGGCCTGAACCCGATTCATGCGCTCTATcc > 1:2447002/1‑68 (MQ=255) aTGCTGGTGGATGTGGCAAAACGTGGCGGGTCGTTCATTGGCCTGAACCCGATTCATGCGCTCTATcc > 1:2136154/1‑68 (MQ=255) aTGCTGGTGGATGTGGCAAAACGTGGCGGGTCGTTCATTGGCCTGAACCCGATTCATGCGCTCTATcc > 1:2028016/1‑68 (MQ=255) aTGCTGGTGGATGTGGCAAAACGTGGCGGGTCGTTCATTGGCCTGAACCCGATTCATGCGCTCTATcc > 1:446717/1‑68 (MQ=255) aTGCTGGTGGATGTGGCAAAACGTGGCGGGTCGTTCATTGGCCTGAACCCGATTCATGCGCTCTATcc > 1:120435/1‑68 (MQ=255) ggtggATGTGGCAAAACGTGGCGGGTCGTTCATTGGCCTGAACCCGATTCATGCGCTCTATCCGGCaaa < 1:3343184/69‑1 (MQ=255) ggtggATGTGGCAAAACGTGGCGGGTCGTTCATTGGCCTGAACCCGATTCATGCGCTCTATCCGGCaaa < 1:927127/69‑1 (MQ=255) ggtggATGTGGCAAAACGTGGCGGGTCGTTCATTGGCCTGAACCCGATTCATGCGCTCTATCCGGCaaa < 1:2073551/69‑1 (MQ=255) ggtggATGTGGCAAAACGTGGCGGGTCGTTCATTGGCCTGAACCCGATTCATGCGCTCTATCCGGCaaa < 1:1462228/69‑1 (MQ=255) gtgGCAAAACGTGGCGGGTCGTTCATTGGCCTGAACCCGATTCATGCGCTCTATCCGGCAAATCCGgag < 1:1558114/69‑1 (MQ=255) gTTTATTGGTCTGAACCCGATTCATGCGCTCTATCTGGCAAATCCGGAAAGTGCCAGCCCGTACAGccc < 1:2123908/69‑1 (MQ=255) gTTTATTGGTCTGAACCCGATTCATGCGCTCTATCTGGCAAATCCGGAAAGTGCCAGCCCGTACAGccc < 1:30087/69‑1 (MQ=255) ttaTTGGTCTGAACCCGATTCATGCGCTCTATCTGGCAAATCCGGAAAGTGCCAGCCCGTACAGccc < 1:1282253/65‑1 (MQ=255) cATTGGCCTGAACCCGATTCATGCGCTCTATCCGGCAAATCCGGAGAGCGCCAGCCCATACAGCCCGtc > 1:27020/1‑69 (MQ=255) cATTGGCCTGAACCCGATTCATGCGCTCTATCCGGCAAATCCGGAGAGCGCCAGCCCATACAGCCCGt > 1:1349442/1‑68 (MQ=255) tcTGAACCCGATTCATGCGCTCTATCTGGCAAATCCGgaa > 1:491205/2‑39 (MQ=255) tcTGAACCCGATTCATGCGCTCTATCTGGCAAATCCGgaa > 1:606383/2‑39 (MQ=255) tcTGAACCCGATTCATGCGCTCTATCTGGCAAATCCGgaa > 1:649323/2‑39 (MQ=255) tcTGAACCCGATTCATGCGCTCTATCTGGCAAATCCGgaa > 1:758150/2‑39 (MQ=255) tcTGAACCCGATTCATGCGCTCTATCTGGCAAATCCGgaa > 1:3335283/2‑39 (MQ=255) tcTGAACCCGATTCATGCGCTCTATCTGGCAAATCCGgaa > 1:3330942/2‑39 (MQ=255) tcTGAACCCGATTCATGCGCTCTATCTGGCAAATCCGgaa > 1:987190/2‑39 (MQ=255) tcTGAACCCGATTCATGCGCTCTATCTGGCAAATCCGgaa > 1:759215/2‑39 (MQ=255) tcTGAACCCGATTCATGCGCTCTATCTGGCAAATCCGgaa > 1:3311130/2‑39 (MQ=255) tcTGAACCCGATTCATGCGCTCTATCTGGCAAATCCGgaa > 1:3113831/2‑39 (MQ=255) tcTGAACCCGATTCATGCGCTCTATCTGGCAAATCCGgaa > 1:2283043/2‑39 (MQ=255) tcTGAACCCGATTCATGCGCTCTATCTGGCAAATCCGgaa > 1:2276538/2‑39 (MQ=255) tcTGAACCCGATTCATGCGCTCTATCTGGCAAATCCGgaa > 1:218584/2‑39 (MQ=255) tcTGAACCCGATTCATGCGCTCTATCTGGCAAATCCGgaa > 1:1979817/2‑39 (MQ=255) tcTGAACCCGATTCATGCGCTCTATCTGGCAAATCCGgaa > 1:1968167/2‑39 (MQ=255) tcTGAACCCGATTCATGCGCTCTATCTGGCAAATCCGgaa > 1:1966171/2‑39 (MQ=255) tcTGAACCCGATTCATGCGCTCTATCTGGCAAATCCGgaa > 1:1953555/2‑39 (MQ=255) tcTGAACCCGATTCATGCGCTCTATCTGGCAAATCCGgaa > 1:1940829/2‑39 (MQ=255) tcTGAACCCGATTCATGCGCTCTATCTGGCAAATCCGgaa > 1:1813485/2‑39 (MQ=255) tcTGAACCCGATTCATGCGCTCTATCTGGCAAATCCGgaa > 1:1349451/2‑39 (MQ=255) tCATGCGCTCTATCCGGCAAATCCGGAGAGCGCCAGCCCa > 1:921919/1‑40 (MQ=255) tCATGCGCTCTATCCGGCAAATCCGGAGAGCGCCAGCCCATACAGCCCGTCTTCTCGCCGTTGGCTGaa > 1:1473120/1‑69 (MQ=255) | ATGCTGGTGGATGTGGCAAAACGTGGCGGGTCGTTCATTGGCCTGAACCCGATTCATGCGCTCTATCCGGCAAATCCGGAGAGCGCCAGCCCATACAGCCCGTCTTCTCGCCGTTGGCTGAA > minE/2671533‑2671654 |
Alignment Legend |
---|
Aligned base mismatch/match (shaded by quality score): ATCG/ATCG < 3 ≤ ATCG/ATCG < 21 ≤ ATCG/ATCG < 32 ≤ ATCG/ATCG < 36 ≤ ATCG/ATCG |
Unaligned base: atcg Masked matching base: atcg Alignment gap: ‑ Deleted base: ‑ |