| Predicted mutation | |||||||
|---|---|---|---|---|---|---|---|
| evidence | seq id | position | mutation | freq | annotation | gene | description |
| RA | minE | 2,675,208 | A→G | 55.4% | L89L (TTA→CTA) ‡ | gntY ← | predicted gluconate transport associated protein |
| Read alignment evidence... | |||||||||||
|---|---|---|---|---|---|---|---|---|---|---|---|
| seq id | position | ref | new | freq | score (cons/poly) | reads | annotation | genes | product | ||
| * | minE | 2,675,208 | 0 | A | G | 55.4% | 13.2 / 50.1 | 65 | L89L (TTA→CTA) ‡ | gntY | predicted gluconate transport associated protein |
| Reads supporting (aligned to +/- strand): ref base A (4/25); new base G (19/17); total (23/42) | |||||||||||
| Fisher's exact test for biased strand distribution p-value = 1.54e-03 | |||||||||||
| Kolmogorov-Smirnov test that lower quality scores support variant p-value = 1.00e+00 | |||||||||||
TCAGCGGTGCATCGTCTGCCACTTTACGCATTTTGGCGTTCGGGGCTTTCAGCGTTAACTGGGAACCCAACTGGTCGGTAACAAAATCGATCTCTGCATCTTCCAGGTATGGTGCGCTTAACTC > minE/2675151‑2675274 | tCAGCGGTGCATCGTCTGCCACTTTACGCATTTTGGCGTTCGGGGCTTTCAGCGTTAACTGGGAAccc < 1:538016/68‑1 (MQ=255)tCAGCGGTGCATCGTCTGCCACTTTACGCATTTTGGCGTTCGGGGCTTTCAGCGTTAACTGGGAAccc < 1:509645/68‑1 (MQ=255)tCAGCGGTGCATCGTCTGCCACTTTACGCATTTTGGCGTTCGGGGCTTTCAGCGTTAACTGGGAAccc < 1:1930203/68‑1 (MQ=255)tCAGCGGTGCATCGTCTGCCACTTTACGCATTTTGGCGTTCGGGGCTTTCAGCGTTAACTGGGAAccc < 1:1319068/68‑1 (MQ=255)tCAGCGGTGCATCGTCTGCCACTTTACGCATTTTGGCGTTCGGGGCTTTCAGCGTTAACTGGGAAccc < 1:2642276/68‑1 (MQ=255)tCAGCGGTGCATCGTCTGCCACTTTACGCATTTTGGCGTTCGGGGCTTTCAGCGTTAACTGGGAACCCa < 1:1956173/69‑1 (MQ=255)tCAGCGGTGCATCGTCTGCCACTTTACGCATTTTGGCGTTCGGGGCTTTCAGCGTTAACTGGGAACCCa < 1:2296864/69‑1 (MQ=255)tCAGCGGTGCATCGTCTGCCACTTTACGCATTTTGGCGTTCGGGGCTTTCAGCGTTAACTGGGAACCCa < 1:2556972/69‑1 (MQ=255)tCAGCGGTGCATCGTCTGCCACTTTACGCATTTTGGCGTTCGGGGCTTTCAGCGTTAACTGGGAACCCa < 1:1542603/69‑1 (MQ=255)tCAGCGGTGCATCGTCTGCCACTTTACGCATTTTGGCGTTCGGGGCTTTCAGCGTTAACTGGGAACCCa < 1:265218/69‑1 (MQ=255)tCAGCGGTGCATCGGCTGCCACTTTACGCATTTTGGCGTTCGGGGCTTTCAGCGTTAACTGGGAACCCa < 1:87586/69‑1 (MQ=255) cagCCACTTTACGCATTTTGGCGTTAGGCGCTTTCAGCGTCAGCTGCGAACCCAACTGGTCGGt < 1:2835651/62‑1 (MQ=255) cagCCACTTTACGCATTTTGGCGTTAGGCGCTTTCAGCGTCAGCTGCGAACCCAACTGGTCGGt < 1:2243344/62‑1 (MQ=255) cagCCACTTTACGCATTTTGGCGTTAGGCGCTTTCAGCGTCAGCTGCGAACCCAACTGGTCGGt < 1:2400887/62‑1 (MQ=255) cagCCACTTTACGCATTTTGGCGTTAGGCGCTTTCAGCGTCAGCTGCGAACCCAACTGGTCGGt < 1:2424146/62‑1 (MQ=255) cagCCACTTTACGCATTTTGGCGTTAGGCGCTTTCAGCGTCAGCTGCGAACCCAACTGGTCGGt < 1:2730767/62‑1 (MQ=255) cagCCACTTTACGCATTTTGGCGTTAGGCGCTTTCAGCGTCAGCTGCGAACCCAACTGGTCGGt < 1:1071363/62‑1 (MQ=255) cagCCACTTTACGCATTTTGGCGTTAGGCGCTTTCAGCGTCAGCTGCGAACCCAACTGGTCGGt < 1:2926157/62‑1 (MQ=255) cagCCACTTTACGCATTTTGGCGTTAGGCGCTTTCAGCGTCAGCTGCGAACCCAACTGGTCGGt < 1:3029231/62‑1 (MQ=255) cagCCACTTTACGCATTTTGGCGTTAGGCGCTTTCAGCGTCAGCTGCGAACCCAACTGGTCGGt < 1:469617/62‑1 (MQ=255) cagCCACTTTACGCATTTTGGCGTTAGGCGCTTTCAGCGTCAGCTGCGAACCCAACTGGTCGGt < 1:550283/62‑1 (MQ=255) cagCCACTTTACGCATTTTGGCGTTAGGCGCTTTCAGCGTCAGCTGCGAACCCAACTGGTCGGt < 1:617873/62‑1 (MQ=255) cagCCACTTTACGCATTTTGGCGTTAGGCGCTTTCAGCGTCAGCTGCGAACCCAACTGGTCGGt < 1:927629/62‑1 (MQ=255) cagCCACTTTACGCATTTTGGCGTTAGGCGCTTTCAGCGTCAGCTGCGAACCCAACTGGTCGGt < 1:1024157/62‑1 (MQ=255) cagCCACTTTACGCATTTTGGCGTTAGGCGCTTTCAGCGTCAGCTGCGAACCCAACTGGTCGGt < 1:1916666/62‑1 (MQ=255) cagCCACTTTACGCATTTTGGCGTTAGGCGCTTTCAGCGTCAGCTGCGAACCCAACTGGTCGGt < 1:1421565/62‑1 (MQ=255) cagCCACTTTACGCATTTTGGCGTTAGGCGCTTTCAGCGTCAGCTGCGAACCCAACTGGTCGGt < 1:1676440/62‑1 (MQ=255) cagCCACTTTACGCATTTTGGCGTTAGGCGCTTTCAGCGTCAGCTGCGAACCCAACTGGTCGGt < 1:1547720/62‑1 (MQ=255) tACGCATTTTGGCGTTCGGGGCTTTCAGCGTTAACTGGGAACCCAACTGGTCGGTAACAAAATCGAtct > 1:2828389/1‑69 (MQ=255) cATTTTGGCGTTCGGGGCTTTCAGCGTTAACTGGGAACCCAACTGGTCGGTAACAAAATCGATCTCTg < 1:2133060/68‑1 (MQ=255) cATTTTGGCGTTCGGGGCTTTCAGCGTTAACTGGGAACCCAACTGGTCGGTAACAAAATCGATCTCTg < 1:734159/68‑1 (MQ=255) cATTTTGGCGTTCGGGGCTTTCAGCGTTAACTGGGAACCCAACTGGTCGGTAACAAAATCGATCTCTg < 1:1116449/68‑1 (MQ=255) cATTTTGGCGTTCGGGGCTTTCAGCGTTAACTGGGAACCCAACTGGTCGGTAACAAAATCGATCTCTg < 1:3407570/68‑1 (MQ=255) cATTTTGGCGTTCGGGGCTTTCAGCGTTAACTGGGAACCCAACTGGTCGGTAACAAAATCGATCTCTg < 1:2564706/68‑1 (MQ=255) cATTTTGGCGTTCGGGGCTTTCAGCGTTAACTGGGAACCCAACTGGTCGGTAACAAAATCGATCTCTg < 1:1458141/68‑1 (MQ=255) aTTTTGGCGTTCGGGGCTTTCAGCGTTAACTGGGAACCCAACTGGTCGGTATCAAAATCGATCTCTGCa < 1:888360/69‑1 (MQ=255) aTTTTGGCGTTCGGGGCTTTCAGCGTTAACTGGGAACCCAACTGGTCGGTAACAAAATCGATCTCTg < 1:309279/67‑1 (MQ=255) aTTTTGGCGTTCGGGGCTTTCAGCGTTAACTGGGAACCCAACTGGTCGGTAACAAAATCGATCTCTGCa < 1:539326/69‑1 (MQ=255) tttGGCGTTAGGCGCTTTCAGCGTCAGCTGCGAACCCAACTGGTCGGTAACAAAATCGATCTCTGCAt > 1:1511469/1‑68 (MQ=255) tttGGCGTTAGGCGCTTTCAGCGTCAGCTGCGAACCCAACTGGTCGGTAACAAAATCGATCTCTGCAt > 1:1318861/1‑68 (MQ=255) tttGGCGTTAGGCGCTTTCAGCGTCAGCTGCGAACCCAACTGGTCGGTAACAAAATCGATCTCTGCAt > 1:1909103/1‑68 (MQ=255) tttGGCGTTAGGCGCTTTCAGCGTCAGCTGCGAACCCAACTGGTCGGTAACAAAATCGATCTCTGCATc > 1:2889616/1‑69 (MQ=255) tttGGCGTTAGGCGCTTTCAGCGTCAGCTGCGAACCCAACTGGTCGGTAACAAAATCGATCTCTGCATc > 1:966685/1‑69 (MQ=255) tttGGCGTTAGGCGCTTTCAGCGTCAGCTGCGAACCCAACTGGTCGGTAACAAAATCGATCTCTGCATc > 1:955663/1‑69 (MQ=255) tttGGCGTTAGGCGCTTTCAGCGTCAGCTGCGAACCCAACTGGTCGGTAACAAAATCGATCTCTGCATc > 1:2036987/1‑69 (MQ=255) tttGGCGTTAGGCGCTTTCAGCGTCAGCTGCGAACCCAACTGGTCGGTAACAAAATCGATCTCTGCATc > 1:2248276/1‑69 (MQ=255) tttGGCGTTAGGCGCTTTCAGCGTCAGCTGCGAACCCAACTGGTCGGTAACAAAATCGATCTCTGCATc > 1:1073158/1‑69 (MQ=255) tttGGCGTTAGGCGCTTTCAGCGTCAGCTGCGAACCCAACTGGTCGGTAACAAAATCGATCTCTGCATc > 1:558374/1‑69 (MQ=255) tttGGCGTTAGGCGCTTTCAGCGTCAGCTGCGAACCCAACTGGTCGGTAACAAAATCGATCTCTGCATc > 1:552767/1‑69 (MQ=255) tttGGCGTTAGGCGCTTTCAGCGTCAGCTGCGAACCCAACTGGTCGGTAACAAAATCGATCTCTGCATc > 1:2325995/1‑69 (MQ=255) tttGGCGTTAGGCGCTTTCAGCGTCAGCTGCGAACCCAACTGGTCGGTAACAAAATCGATCTCTGCATc > 1:2725638/1‑69 (MQ=255) tttGGCGTTAGGCGCTTTCAGCGTCAGCTGCGAACCCAACTGGTCGGTAACAAAATCGATCTCTGCATc > 1:1194917/1‑69 (MQ=255) tttGGCGTTAGGCGCTTTCAGCGTCAGCTGCGAACCCAACTGGTCGGTAACAAAATCGATCTCTGCATc > 1:1914720/1‑69 (MQ=255) tttGGCGTTAGGCGCTTTCAGCGTCAGCTGCGAACCCAACTGGTCGGTAACAAAATCGATCTCTGCATc > 1:3162576/1‑69 (MQ=255) tttGGCGTTAGGCGCTTTCAGCGTCAGCTGCGAACCCAACTGGTCGGTAACAAAATCGATCTCTGCATc > 1:2061941/1‑69 (MQ=255) tttGGCGTTAGGCGCTTTCAGCGTCAGCTGCGAACCCAACTGGTCGGTAACAAAATCGATCTCTGCATc > 1:2655202/1‑69 (MQ=255) tttGGCGTTAGGCGCTTTCAGCGTCAGCTGCGAACCCAACTGGTCGGTAACAAAATCGATCTCTGCATc > 1:2612127/1‑69 (MQ=255) ttCGGGGCTTTCAGCGTTAACTGGGAACCCAACTGGTCGGTAACAAAATCGATCTCTGCATCTTCCAgg < 1:2786161/69‑1 (MQ=255) ttCGGGGCTTTCAGCGTTAACTGGGAACCCAACTGGTCGGTAACAAAATCGATCTCTGCATCTTCCAgg < 1:1185204/69‑1 (MQ=255) ttCGGGGCTTTCAGCGTTAACTGGGAACCCAACTGGTCGGTAACAAAATCGATCTCTGCATCTTCCAgg < 1:692650/69‑1 (MQ=255) ttCGGGGCTTTCAGCGTTAACTGGGAACCCAACTGGTCGGTAACAAAATCGATCTCTGCATCTTCCAgg < 1:1955076/69‑1 (MQ=255) ttCGGGGCTTTCAGCGTTAACTGGGAACCCAACTGGTCGGTAACAAAATCGATCTCTGCATCTTCCAgg < 1:83444/69‑1 (MQ=255) cGGGGCTTTCAGCGTTAACTGGGAACCCAACTGGTCGGTAACAAAATCGATCTCTGCATCTTCCAGGTa > 1:3318156/1‑69 (MQ=255) cGGGGCTTTCAGCGTTAACTGGGAACCCAACTGGTCGGTAACAAAATCGATCTCTGCATCTTCCAGGTa > 1:3116670/1‑69 (MQ=255) cGGGGCTTTCAGCGTTAACTGGGAACCCAACTGGTCGGTAACAAAATCGATCTCTGCATCTTCCAGGTa > 1:1360174/1‑69 (MQ=255) aaCTGGGAACCCAACTGGTCGGTAACAAAATCGATCTCTGCATCTTCCAGGTATGGTGCGCTTAACtc > 1:3240870/1‑68 (MQ=255) aaCTGGGAACCCAACTGGTCGGTAACAAAATCGATCTCTGCATCTTCCAGGTATGGTGCGCTTAACtc > 1:3133174/1‑68 (MQ=255) aaCTGGGAACCAAACTGGTCGGTAACAAAATCGAtctc > 1:1105884/1‑38 (MQ=255) | TCAGCGGTGCATCGTCTGCCACTTTACGCATTTTGGCGTTCGGGGCTTTCAGCGTTAACTGGGAACCCAACTGGTCGGTAACAAAATCGATCTCTGCATCTTCCAGGTATGGTGCGCTTAACTC > minE/2675151‑2675274 |
| Alignment Legend |
|---|
Aligned base mismatch/match (shaded by quality score): ATCG/ATCG < 3 ≤ ATCG/ATCG < 21 ≤ ATCG/ATCG < 32 ≤ ATCG/ATCG < 36 ≤ ATCG/ATCG |
Unaligned base: atcg Masked matching base: atcg Alignment gap: ‑ Deleted base: ‑ |