| Predicted mutation | |||||||
|---|---|---|---|---|---|---|---|
| evidence | seq id | position | mutation | freq | annotation | gene | description |
| RA | minE | 2,679,505 | C→T | 24.3% | V395V (GTG→GTA) | feoB ← | fused ferrous iron transporter, protein B |
| Read alignment evidence... | |||||||||||
|---|---|---|---|---|---|---|---|---|---|---|---|
| seq id | position | ref | new | freq | score (cons/poly) | reads | annotation | genes | product | ||
| * | minE | 2,679,505 | 0 | C | T | 24.3% | 121.1 / 31.1 | 95 | V395V (GTG→GTA) | feoB | fused ferrous iron transporter, protein B |
| Reads supporting (aligned to +/- strand): ref base C (46/25); new base T (14/9); total (61/34) | |||||||||||
| Fisher's exact test for biased strand distribution p-value = 8.05e-01 | |||||||||||
| Kolmogorov-Smirnov test that lower quality scores support variant p-value = 9.77e-01 | |||||||||||
CAAGCGTACGTGCACCCATTACCGACGGTACGTTACAACCGAAACCGACGATCAGCGGCACAAAGGATTTCCCCGGCAAGCCCAGCGCCTGCATCAGACGGTCCATCACAAACGCCGCACGCGCCA > minE/2679447‑2679572 | cAAGCGTACGTGCGCCCATTACCGACGGTACGTTACAACCGAAACCAACGATCAGCGGTACAAAGGAtt > 1:1973684/1‑69 (MQ=255)cAAGCGTACGTGCGCCCATTACCGACGGTACGTTACAACCGAAACCAACGATCAGCGGTACAAAGGAtt > 1:968406/1‑69 (MQ=255)cAAGCGTACGTGCGCCCATTACCGACGGTACGTTACAACCGAAACCAACGATCAGCGGTACAAAGGAtt > 1:882639/1‑69 (MQ=255)cAAGCGTACGTGCGCCCATTACCGACGGTACGTTACAACCGAAACCAACGATCAGCGGTACAAAGGAtt > 1:659985/1‑69 (MQ=255)cAAGCGTACGTGCGCCCATTACCGACGGTACGTTACAACCGAAACCAACGATCAGCGGTACAAAGGAtt > 1:3380305/1‑69 (MQ=255)cAAGCGTACGTGCGCCCATTACCGACGGTACGTTACAACCGAAACCAACGATCAGCGGTACAAAGGAtt > 1:3119520/1‑69 (MQ=255)cAAGCGTACGTGCGCCCATTACCGACGGTACGTTACAACCGAAACCAACGATCAGCGGTACAAAGGAtt > 1:3100704/1‑69 (MQ=255)cAAGCGTACGTGCGCCCATTACCGACGGTACGTTACAACCGAAACCAACGATCAGCGGTACAAAGGAtt > 1:2007895/1‑69 (MQ=255)cAAGCGTACGTGCGCCCATTACCGACGGTACGTTACAACCGAAACCAACGATCAGCGGTACAAAGGAtt > 1:19146/1‑69 (MQ=255)cAAGCGTACGTGCGCCCATTACCGACGGTACGTTACAACCGAAACCAACGATCAGCGGTACAAAGGAtt > 1:1832489/1‑69 (MQ=255)cAAGCGTACGTGCGCCCATTACCGACGGTACGTTACAACCGAAACCAACGATCAGCGGTACAAAGGAtt > 1:1804878/1‑69 (MQ=255)cAAGCGTACGTGCGCCCATTACCGACGGTACGTTACAACCGAAACCAACGATCAGCGGTACAAAGGAtt > 1:1379463/1‑69 (MQ=255)cAAGCGTACGTGCGCCCATTACCGACGGTACGTTACAACCGAAACCAACGATCAGCGGTACAAAGGAt > 1:1595018/1‑68 (MQ=255)cAAGCGTACGTGCGCCCATTACCGACGGTACGTTAAAACCGAAACCAACGATCAGCGGTACAAAGGAtt > 1:1961603/1‑69 (MQ=255)cAAGCGTACGTGCACCCATTACCGACGGTACGTTACAACCGAAACCGACGATCAGCGGCACAAAGGAtt > 1:1366718/1‑69 (MQ=255) cGTGCACCCATTACCGACGGTACGTTACAACCGAAACCGACGATCAGCGGCACAAAGGATTTCCCCg > 1:2143856/1‑67 (MQ=255) cGTGCACCCATTACCGACGGTACGTTACAACCGAAACCGACGATCAGCGGCACAAAGGATTTCCCCg > 1:3101247/1‑67 (MQ=255) aTTACCGACGGTACGTTACAACCGAAACCGACGATCAGCGGCACAAAGGATTTCCCCGGCAAGCCCAgc < 1:519535/69‑1 (MQ=255) aTTACCGACGGTACGTTACAACCGAAACCGACGATCAGCGGCACAAAGGATTTCCCCGGCAAGCCCAgc < 1:2051312/69‑1 (MQ=255) aTTACCGACGGTACGTTACAACCGAAACCGACGATCAGCGGCACAAAGGATTTCCCCGGCAAGCCCAgc < 1:728862/69‑1 (MQ=255) aTTACCGACGGTACGTTACAACCGAAACCGACGATCAGCGGCACAAAGGATTTCCCCGGCAAGCCCAgc < 1:736528/69‑1 (MQ=255) aTTACCGACGGTACGTTACAACCGAAACCGACGATCAGCGGCACAAAGGATTTCCCCGGCAAGCCCAgc < 1:1169645/69‑1 (MQ=255) aTTACCGACGGTACGTTACAACCGAAACCGACGATCAGCGGCACAAAGGATTTCCCCGGCAAGCCCAgc < 1:459755/69‑1 (MQ=255) aTTACCGACGGTACGTTACAACCGAAACCGACGATCAGCGGCACAAAGGATTTCCCCGGCAAGCCCAgc < 1:391181/69‑1 (MQ=255) aTTACCGACGGTACGTTACAACCGAAACCGACGATCAGCGGCACAAAGGATTTCCCCGGCAAGCCCAgc < 1:1489397/69‑1 (MQ=255) aCCGACGGTTCGTTACAACCGAAACCGACGATCAGCGGCACAAAgg < 1:94198/46‑1 (MQ=255) aCCGACGGTACGTTACAACCGAAACCGACGATCAGCGGCACAAAgg < 1:1855014/46‑1 (MQ=255) aCCGACGGTACGTTACAACCGAAACCGACGATCAGCGGCACAAAgg < 1:1115275/46‑1 (MQ=255) aCCGACGGTACGTTACAACCGAAACCGACGATCAGCGGCACAAAgg > 1:2091201/1‑46 (MQ=255) aCCGACGGTACGTTACAACCGAAACCGACGATCAGCGGCACAAAgg > 1:2334366/1‑46 (MQ=255) aCCGACGGTACGTTACAACCGAAACCGACGATCAGCGGCACAAAgg > 1:1321962/1‑46 (MQ=255) aCCGACGGTACGTTACAACCGAAACCGACGATCAGCGGCACAAAgg > 1:2714540/1‑46 (MQ=255) aCCGACGGTACGTTACAACCGAAACCGACGATCAGCGGCACAAAgg > 1:294670/1‑46 (MQ=255) aCCGACGGTACGTTACAACCGAAACCGACGATCAGCGGCACAAAgg > 1:1010248/1‑46 (MQ=255) aCCGACGGTACGTTACAACCGAAACCGACGATCAGCGGCACAAAgg > 1:1289124/1‑46 (MQ=255) aCCGACGGTACGTTACAACCGAAACCGACGATCAGCGGCACAAAgg > 1:1945242/1‑46 (MQ=255) aCCGACGGTACGTTACAACCGAAACCGACGATCAGCGGCACAAAgg < 1:3352941/46‑1 (MQ=255) aCCGACGGTACGTTACAACCGAAACCGACGATCAGCGGCACAAAgg > 1:841719/1‑46 (MQ=255) aCCGACGGTACGTTACAACCGAAACCGACGATCAGCGGCACAAAgg > 1:1581779/1‑46 (MQ=255) aCCGACGGTACGTTACAACCGAAACCGACGATCAGCGGCACAAAgg < 1:185107/46‑1 (MQ=255) aCCGACGGTACGTTACAACCGAAACCGACGATCAGCGGCACAAAgg > 1:1275237/1‑46 (MQ=255) aCCGACGGTACGTTACAACCGAAACCGACGATCAGCGGCACAAAgg < 1:3089009/46‑1 (MQ=255) aCCGACGGTACGTTACAACCGAAACCGACGATCAGCGGCACAAAgg < 1:1788892/46‑1 (MQ=255) aCCGACGGTACGTTACAACCGAAACCGACGATCAGCGGCACAAAgg > 1:1448041/1‑46 (MQ=255) aCCGACGGTACGTTACAACCGAAACCGACGATCAGCGGCACAAAgg > 1:1457602/1‑46 (MQ=255) aCCGACGGTACGTTACAACCGAAACCGACGATCAGCGGCACAAAgg < 1:1662887/46‑1 (MQ=255) aCCGACGGTACGTTACAACCGAAACCGACGATCAGCGGCACAAAgg > 1:156903/1‑46 (MQ=255) aCCGACGGTACGTTACAACCGAAACCGACGATCAGCGGCACAAAgg < 1:1579503/46‑1 (MQ=255) aCCGACGGTACGTTACAACCGAAACCGACGATCAGCGGCACAAAGGa < 1:2999731/47‑1 (MQ=255) aCCGACGGTACGTTACAACCGAAACCGACGATCAGCGGCACAAAGGa < 1:1266023/47‑1 (MQ=255) aCCGACGGTACGTTACAACCGAAACCGACGATCAGCGGCACAAAGGa < 1:1637202/47‑1 (MQ=255) aCCGACGGTACGTTACAACCGAAACCGACGATCAGCGGCACAAAGGATTTCCCCGGCAAGCCCAGCGcc > 1:3276023/1‑69 (MQ=255) aCCGACGGTACGTTACAACCGAAACCGACGATCAGCGGCACAAAGGATTTCCCCGGCAAGCCCAGCGcc > 1:3094540/1‑69 (MQ=255) aCCGACGGTACGTTACAACCGAAACCGACGATCAGCGGCACAAAGGATTTCCCCGGCAAGCCCAGCGcc > 1:358773/1‑69 (MQ=255) ccGACGGTACGTTACAACCGAAACCGACGATCAGCGGCACAAAGGATTTCCCCGGCAAGCCCAgc < 1:659597/65‑1 (MQ=255) gACGGTACGTTACAACCGAAACCGACGATCAGCGGCACAAAGGATTTCCCCGGCAAGCCCAGCGCCTg < 1:1382578/68‑1 (MQ=255) gACGGTACGTTACAACCGAAACCGACGATCAGCGGCACAAAGGATTTCCCCGGCAAGCCCAGCGCCTg < 1:1590566/68‑1 (MQ=255) cGGTACGTTACAACCGAAACCGACGATCAGCGGCACAAAGGATTTCCCCGGCAAGCCCAGCGCCTGc > 1:1432522/1‑67 (MQ=255) cGGTACGTTACAACCGAAACCGACGATCAGCGGCACAAAGGATTTCCCCGGCAAGCCCAGCGCCTGc > 1:2438178/1‑67 (MQ=255) tACGTTACAACCGAAACCGACGATCAGCGGCACAAAGTATTTCCCCGGCAAGCCCAGCGCCTGCATCAg < 1:306055/69‑1 (MQ=255) aCGTTACAACCGAAACCGACGATCAGCGGCACAAAGGATTTCCCCGGCAAGCCCAGCGCCTGCATCAg > 1:543263/1‑68 (MQ=255) aCGTTACAACCGAAACCGACGATCAGCGGCACAAAGGATTTCCCCGGCAAGCCCAGCGCCTGCATCAGa > 1:2783462/1‑69 (MQ=255) aCGTTACAACCGAAACCGACGATCAGCGGCACAAAGGATTTCCCCGGCAAGCCCAGCGCCTGCATCAGa > 1:1013834/1‑69 (MQ=255) aCGTTACAACCGAAACCGACGATCAGCGGCACAAAGGATTTCCCCGGCAAGCCCAGCGCCTGCATCAGa > 1:227077/1‑69 (MQ=255) aCGTTACAACCGAAACCGACGATCAGCGGCACAAAGGATTTCCCCGGCAAGCCCAGCGCCTGCATCAGa > 1:110275/1‑69 (MQ=255) aCGTTACAACCGAAACCGACGATCAGCGGCACAAAGGATTTCCCCGGCAAGCCCAGCGCCTGCATCAGa > 1:1648824/1‑69 (MQ=255) aCGTTACAACCGAAACCGACGATCAGCGGCACAAAGGATTTCCCCGGCAAGCCCAGCGCCTGCATCAGa > 1:1664385/1‑69 (MQ=255) aCGTTACAACCGAAACCGACGATCAGCGGCACAAAGGATTTCCCCGGCAAGCCCAGCGCCTGCATCAGa > 1:930303/1‑69 (MQ=255) aCGTTACAACCGAAACCGACGATCAGCGGCACAAAGGATTTCCCCGGCAAGCCCAGCGCCTGCATCAGa > 1:1020590/1‑69 (MQ=255) aCGTTACAACCGAAACCGACGATCAGCGGCACAAAGGATTTCCCCGGCAAGCCCAGCGCCTGCATCAGa > 1:2125815/1‑69 (MQ=255) aCGTTACAACCGAAACCGACGATCAGCGGCACAAAGGATTTCCCCGGCAAGCCCAGCGCCTGCATCAGa > 1:1904316/1‑69 (MQ=255) ccgaaaccgaCGATCAGCGGCACAAAGGATTTCCCCGGCAAGCCCAGCGCCTGCATCAGACGGTCCAt > 1:1250114/1‑68 (MQ=255) accgaCGATCAGCGGCACAAAGGATTTCCCCGGCAAGCCCAGCGCCTGCATCAGACGGTCCATCACaaa > 1:1282202/1‑69 (MQ=255) accgaCGATCAGCGGCACAAAGGATTTCCCCGGCAAGCCCAGCGCCTGCATCAGACGGTCCATCACaaa > 1:2850590/1‑69 (MQ=255) gacgaTCAGCGGCACAAAGGATTTCCCCGGCAAGCCCAGCGCCTGCATCAGAc > 1:1768203/1‑53 (MQ=255) gacgaTCAGCGGCACAAAGGATTTCCCCGGCAAGCCCAGCGCCTGCATCAGACGGTCCAt > 1:685695/1‑60 (MQ=255) gacgaTCAGCGGCACAAAGGATTTCCCCGGCAAGCCCAGCGCCTGCATCAGACGGTCCATCACAAAcgc > 1:654545/1‑69 (MQ=255) gacgaTCAGCGGCACAAAGGATTTCCCCGGCAAGCCCAGCGCCTGCATCAGACGGTCCATCACAAAcgc > 1:1320265/1‑69 (MQ=255) gacgaTCAGCGGCACAAAGGATTTCCCCGGCAAGCCCAGCGCCTGCATCAGACGGTCCATCACAAAcgc > 1:1705285/1‑69 (MQ=255) acgaTCAGCGGTACAAAGGATTTCCCCGGCAAGCCCAGCGCCTGCATCAGACGGTCCATCACAAAcgcc < 1:1618622/69‑1 (MQ=255) acgaTCAGCGGTACAAAGGATTTCCCCGGCAAGCCCAGCGCCTGCATCAGACGGTCCATCACAAAcgcc < 1:50228/69‑1 (MQ=255) acgaTCAGCGGTACAAAGGATTTCCCCGGCAAGCCCAGCGCCTGCATCAGACGGTCCATCACAAAcgcc < 1:1218797/69‑1 (MQ=255) acgaTCAGCGGTACAAAGGATTTCCCCGGCAAGCCCAGCGCCTGCATCAGACGGTCCATCACAAAcgcc < 1:3012104/69‑1 (MQ=255) acgaTCAGCGGTACAAAGGATTTCCCCGGCAAGCCCAGCGCCTGCATCAGACGGTCCATCACAAAcgcc < 1:2270436/69‑1 (MQ=255) acgaTCAGCGGTACAAAGGATTTCCCCGGCAAGCCCAGCGCCTGCATCAGACGGTCCATCACAAAcgcc < 1:2103976/69‑1 (MQ=255) acgaTCAGCGGTACAAAGGATTTCCCCGGCAAGCCCAGCGCCTGCATCAGACGGTCCATCACAAAcgcc < 1:2060230/69‑1 (MQ=255) acgaTCAGCGGTACAAAGGATTTCCCCGGCAAGCCCAGCGCCTGCATCAGACGGTCCATCACAAAcgcc < 1:1719121/69‑1 (MQ=255) acgaTCAGCGGTACAAAGGATTTCCCCGGCAAGCCCAGCGCCTGCATCAGACGGTCCATCACAAAcgcc < 1:1876180/69‑1 (MQ=255) cAGCGGCACAAAGGATTTCCCCGGCAAGCCCAGCGCCTGCATCAGACGGTCCATCACAAACGCCGCAcg > 1:131912/1‑69 (MQ=255) cAGCGGCACAAAGGATTTCCCCGGCAAGCCCAGCGCCTGCATCAGACGGTCCATCACAAACGCCGCAcg > 1:320863/1‑69 (MQ=255) cAGCGGCACAAAGGATTTCCCCGGCAAGCCCAGCGCCTGCATCAGACGGTCCATCACAAACGCCGCAcg > 1:1989196/1‑69 (MQ=255) cAGCGGCACAAAGGATTTCCCCGGCAAGCCCAGCGCCTGCATCAGACGGTCCATCACAAACGCCGCAcg > 1:3123770/1‑69 (MQ=255) cAGCGGCACAAAGGATTTCCCCGGCAAGCCCAGCGCCTGCATCAGACGGTCCATCACAAACGCCGCAc > 1:1941940/1‑68 (MQ=255) cAGCGGAACAAAGGATTTCCCCGGCAAGCCCAGCGCCTGCATCAGACGGTCCATCACAAACGCCGCAcg > 1:437678/1‑69 (MQ=255) gCACAAAGGATTTCCCCGGCAAGCCCAGCGCCTGCATCAGACGGTCCATCACAAACGCCGCACGCGCCa < 1:1867274/69‑1 (MQ=255) | CAAGCGTACGTGCACCCATTACCGACGGTACGTTACAACCGAAACCGACGATCAGCGGCACAAAGGATTTCCCCGGCAAGCCCAGCGCCTGCATCAGACGGTCCATCACAAACGCCGCACGCGCCA > minE/2679447‑2679572 |
| Alignment Legend |
|---|
Aligned base mismatch/match (shaded by quality score): ATCG/ATCG < 3 ≤ ATCG/ATCG < 21 ≤ ATCG/ATCG < 32 ≤ ATCG/ATCG < 36 ≤ ATCG/ATCG |
Unaligned base: atcg Masked matching base: atcg Alignment gap: ‑ Deleted base: ‑ |