| Predicted mutation | |||||||
|---|---|---|---|---|---|---|---|
| evidence | seq id | position | mutation | freq | annotation | gene | description |
| RA | minE | 2,718,421 | C→T | 14.1% | I77I (ATC→ATT) | argD → | bifunctional acetylornithine aminotransferase and succinyldiaminopimelate aminotransferase |
| Read alignment evidence... | |||||||||||
|---|---|---|---|---|---|---|---|---|---|---|---|
| seq id | position | ref | new | freq | score (cons/poly) | reads | annotation | genes | product | ||
| * | minE | 2,718,421 | 0 | C | T | 14.1% | 138.4 / 9.2 | 77 | I77I (ATC→ATT) | argD | bifunctional acetylornithine aminotransferase and succinyldiaminopimelate aminotransferase |
| Reads supporting (aligned to +/- strand): ref base C (36/30); new base T (4/7); total (40/37) | |||||||||||
| Fisher's exact test for biased strand distribution p-value = 3.36e-01 | |||||||||||
| Kolmogorov-Smirnov test that lower quality scores support variant p-value = 3.30e-01 | |||||||||||
GCCATCCTGCGCTGGTGAACGCGTTAAAAACCCAGGGCGAAACTCTGTGGCATATCAGTAACGTTTTCACCAATGAACCGGCGCTGCGTCTTGGGCGTAAACTGATTGAGGCAACGTTTGCCG > minE/2718366‑2718488 | gCCATCCTGCGCTGGTGAACGCGTTAAAACCCCAGGGCGAAACTCTGTGGCATATCAGTAACGTTTTc > 1:2948255/1‑68 (MQ=255)gCCATCCTGCGCTGGTGAACGCGTTAAAAACCCAGGGCGAAACTCTGTGGCATATCAGTAACGTTTTc > 1:1566569/1‑68 (MQ=255)gCCATCCTGCGCTGGTGAACGCGTTAAAAACCCAGGGCGAAACTCTGTGGCATATCAGTAACGTTTTc > 1:2374051/1‑68 (MQ=255)gCCATCCTGCGCTGGTGAACGCGTTAAAAACCCAGGGCGAAACTCTGTGGCATATCAGTAACGTTTTc > 1:2373033/1‑68 (MQ=255)gCCATCCTGCGCTGGTGAACGCGTTAAAAACCCAGGGCGAAACTCTGTGGCATATCAGTAACGTTTTc > 1:2825567/1‑68 (MQ=255)gCCATCCTGCGCTGGTGAACGCGTTAAAAACCCAGGGCGAAACTCTGTGGCATATCAGTAACGTTTTc > 1:2221468/1‑68 (MQ=255)gCCATCCTGCGCTGGTGAACGCGTTAAAAACCCAGGGCGAAACTCTGTGGCATATCAGTAACGTTTTc > 1:2960953/1‑68 (MQ=255)gCCATCCTGCGCTGGTGAACGCGTTAAAAACCCAGGGCGAAACTCTGTGGCATATCAGTAACGTTTTc > 1:1465338/1‑68 (MQ=255)gCCATCCTGCGCTGGTGAACGCGTTAAAAACCCAGGGCGAAACTCTGTGGCATATCAGTAACGTTTTc > 1:1325698/1‑68 (MQ=255)gCCATCCTGCGCTGGTGAACGCGTTAAAAACCCAGGGCGAAACTCTGTGGCATATCAGTAACGTTTTc > 1:1277408/1‑68 (MQ=255)gCCATCCTGCGCTGGTGAACGCGTTAAAAACCCAGGGCGAAACTCTGTGGCATATCAGTAACGTTTTc > 1:1070099/1‑68 (MQ=255)gCCATCCTGCGCTGGTGAACGCGTTAAAAACCCAGGGCGAAACTCTGTGGCATATCAGTAACGTTTTc > 1:1148129/1‑68 (MQ=255) cATCCTGCGCTGGTGAACGCGTTAAAAACCCAGGGCGAAACTCTGTGGCATATCAGTAACGTTTTCAcc > 1:1805389/1‑69 (MQ=255) aTCCTGCGCTGGTGAACGCGTTAAAAACCCAGGGCGAAACTCTGTGGCATATCAGTAACGTTTTCAcc < 1:1209825/68‑1 (MQ=255) aTCCTGCGCTGGTGAACGCGTTAAAAACCCAGGGCGAAACTCTGTGGCATATCAGTAACGTTTTCAcc < 1:917659/68‑1 (MQ=255) aTCCTGCGCTGGTGAACGCGTTAAAAACCCAGGGCGAAACTCTGTGGCATATCAGTAACGTTTTCAcc < 1:2271846/68‑1 (MQ=255) aTCCTGCGCTGGTGAACGCGTTAAAAACCCAGGGCGAAACTCTGTGGCATATCAGTAACGTTTTCAcc < 1:6601/68‑1 (MQ=255) aTCCTGCGCTGGTGAACGCGTTAAAAACCCAGGGCGAAACTCTGTGGCATATCAGTAACGTTTTCAcc < 1:3094786/68‑1 (MQ=255) cTGCGCTGGTGAACGCGTTAAAAACCCAGGGCGAAACTCTGTGGCATATCAGTAACGTTTTCACCAATg < 1:1062395/69‑1 (MQ=255) cTGCGCTGGTGAACGCGTTAAAAACCCAGGGCGAAACTCTGTGGCATATCAGTAACGTTTTCACCAATg < 1:8431/69‑1 (MQ=255) cTGCGCTGGTGAACGCGTTAAAAACCCAGGGCGAAACTCTGTGGCATATCAGTAACGTTTTCACCAATg < 1:1734448/69‑1 (MQ=255) cTGCGCTGGTGAACGCGTTAAAAACCCAGGGCGAAACTCTGTGGCATATCAGTAACGTTTTCACCAATg < 1:1244781/69‑1 (MQ=255) gTGAACGCGTTAAAAACCCAGGGCGAAACTCTGTGGCATATCAGTAACGTTTTCACCAATGAACCGgcg > 1:3025723/1‑69 (MQ=255) gTGAACGCGTTAAAAACCCAGGGCGAAACTCTGTGGCATATCAGTAACGTTTTCACCAATGAACCGgcg > 1:494688/1‑69 (MQ=255) gTGAACGCGTTAAAAACCCAGGGCGAAACTCTGTGGCATATCAGTAACGTTTTCACCAATGAACCGgcg > 1:2572626/1‑69 (MQ=255) gTGAACGCGTTAAAAACCCAGGGCGAAACTCTGTGGCATATCAGTAACGTTTTCACCAATGAACCGgcg > 1:1221854/1‑69 (MQ=255) gTGAACGCGTTAAAAACCCAGGGCGAAACTCTGTGGCATATCAGTAACGATTTCTCCAATGAACCGgcg > 1:3343060/1‑69 (MQ=255) cgcgTTAAAAACCCAGGGCGAAACTCTGTGGCATATCATTAACGTTTTCACCAATGAACCGGCGCTGc < 1:404475/68‑1 (MQ=255) cgcgTTAAAAACCCAGGGCGAAACTCTGTGGCATATCAGTAACGTTTTCACCAATGAACCGGCGCTGc < 1:350566/68‑1 (MQ=255) cgcgTTAAAAACCCAGGGCGAAACTCTGTGGCATATCAGTAACGTTTTCACCAATGAACCGGCGCTGc < 1:967821/68‑1 (MQ=255) cgcgTTAAAAACCCAGGGCGAAACTCTGTGGCATATCAGTAACGTTTTCACCAATGAACCGGCGCTGc < 1:667101/68‑1 (MQ=255) cgcgTTAAAAACCCAGGGCGAAACTCTGTGGCATATCAGTAACGTTTTCACCAATGAACCGGCGCTGc < 1:2926691/68‑1 (MQ=255) cgcgTTAAAAACCCAGGGCGAAACTCTGTGGCATATCAGTAACGTTTTCACCAATGAACCGGCGCTGc < 1:476762/68‑1 (MQ=255) cgcgTTAAAAACCCAGGGCGAAACTCTGTGGCATATCAGTAACGTTTTCACCAATGAACCGGCGCTGc < 1:2813294/68‑1 (MQ=255) cgcgTTAAAAACCCAGGGCGAAACTCTGTGGCATATCAGTAACGTTTTCACCAATGAACCGGCGCTGc < 1:167991/68‑1 (MQ=255) cgcgTTAAAAACCCAGGGCGAAACTCTGTGGCATATCAGTAACGTTTTCACCAATGAACCGGCGCTGc < 1:1904002/68‑1 (MQ=255) cgcgTTAAAAACCCAGGGCGAAACTCTGTGGCATATCAGTAACGTTTTCACCAATGAACCGGCGCTGc < 1:2146885/68‑1 (MQ=255) aaaaaCCCAGGGCGAAACTCTGTGGCATATTAGTAACGTTTTCACCAATGagc < 1:3281197/53‑3 (MQ=255) aaaaaCCCAGGGCGAAACTCTGTGGCATATTAGTAACGTTTTCACCAATGagc < 1:254462/53‑3 (MQ=255) aaaaaCCCAGGGCGAAACTCTGTGGCATATTAGTAACGTTTTCACCAATGagc < 1:1178497/53‑3 (MQ=255) aaaaaCCCAGGGCGAAACTCTGTGGCATATTAGTAACGTTTTCACCAATGagc < 1:736334/53‑3 (MQ=255) aaaaaCCCAGGGCGAAACTCTGTGGCATATTAGTAACGTTTTCACCAATGagc < 1:2082626/53‑3 (MQ=255) aaaaaCCCAGGGCGAAACTCTGTGGCATATTAGTAACGTTTTCACCAATGagc < 1:2803872/53‑3 (MQ=255) aaaaaCCCAGGGCGAAACTCTGTGGCATATTAGTAACGTTTTCACCAATGagc < 1:868080/53‑3 (MQ=255) cccAGGGCGAAACTCTGTGGCATATCAGTAACGTTTTCACCAATGAACCGGCGCTGCGTCTTGGGCGTa < 1:1046618/69‑1 (MQ=255) cccAGGGCGAAACTCTGTGGCATATCAGTAACGTTTTCACCAATGAACCGGCGCTGCGTCTTGGGCGTa < 1:2822668/69‑1 (MQ=255) cccAGGGCGAAACTCTGTGGCATATCAGTAACGTTTTCACCAATGAACCGGCGCTGCGTCTTGGGCGTa < 1:886264/69‑1 (MQ=255) cccAGGGCGAAACTCTGTGGCATATCAGTAACGTTTTCACCAATGAACCGGCGCTGCGTCTTGGGCGTa < 1:1075711/69‑1 (MQ=255) cccAGGGCGAAACTCTGTGGCATATCAGTAACGTTTTCACCAATGAACCGGCGCTGCGTCTTGGGCGTa < 1:2372508/69‑1 (MQ=255) gggCGAAACTCTGTGGCATATCAGTAACGTTTTCACCAATGAACCGGCGCTGCGTCTTGGGCGTAAACt < 1:2002820/69‑1 (MQ=255) gCGAAACTCTGTGGCATATCAGTAACGTTTTCACCAATg < 1:811396/39‑1 (MQ=255) atatTAGTAACGTTTTCACCAATGAGCCGGCGCTGCGTCTTGGCCGTAAACTGATTGAGGCAACGTTTg > 1:2358861/1‑69 (MQ=255) atatTAGTAACGTTTTCACCAATGAGCCGGCGCTGCGTCTTGGCCGTAAACTGATTGAGGCAACGTTTg > 1:2639360/1‑69 (MQ=255) atatTAGTAACGTTTTCACCAATGAGCCGGCGCTGCGTCTTGGCCGTAAACTGATTGAGGCAACGTTTg > 1:2556404/1‑69 (MQ=255) atatTAGTAACGTTTTCACCAATGAGCCGGCGCTGCGTCTTGGCCGTAAACTGATTGAGGCAACGTTTg > 1:1205086/1‑69 (MQ=255) atCAGTAACGTTTTCACCAATGAACCGGCGCTGCGTCTTGGGCGTa < 1:2505724/46‑1 (MQ=255) tCAGTAACGTTTTCACCAATGCACCGGCGCTGCGTCTTGGGCGTAAACTGATTGAGGCAACGt > 1:228378/1‑63 (MQ=255) tCAGTAACGTTTTCACCAATGAACCGGCGCTGCGTCTTGGGCg > 1:3326950/1‑43 (MQ=255) tCAGTAACGTTTTCACCAATGAACCGGCGCTGCGTCTTGGGCGTa < 1:1581969/45‑1 (MQ=255) tCAGTAACGTTTTCACCAATGAACCGGCGCTGCGTCTTGGGCGTa < 1:2493435/45‑1 (MQ=255) tCAGTAACGTTTTCACCAATGAACCGGCGCTGCGTCTTGGGCGTa < 1:3214019/45‑1 (MQ=255) tCAGTAACGTTTTCACCAATGAACCGGCGCTGCGTCTTGGGCGTAAACTGATTGAGGCaa > 1:1080894/1‑60 (MQ=255) tCAGTAACGTTTTCACCAATGAACCGGCGCTGCGTCTTGGGCGTAAACTGATTGAGGCAACGtt > 1:327944/1‑64 (MQ=255) tCAGTAACGTTTTCACCAATGAACCGGCGCTGCGTCTTGGGCGTAAACTGATTGAGGCAACGtt > 1:522381/1‑64 (MQ=255) tCAGTAACGTTTTCACCAATGAACCGGCGCTGCGTCTTGGGCGTAAACTGATTGAGGCAACGtt > 1:2624512/1‑64 (MQ=255) tCAGTAACGTTTTCACCAATGAACCGGCGCTGCGTCTTGGGCGTAAACTGATTGAGGCAACGtt > 1:2924757/1‑64 (MQ=255) tCAGTAACGTTTTCACCAATGAACCGGCGCTGCGTCTTGGGCGTAAACTGATTGAGGCAACGtt > 1:3279688/1‑64 (MQ=255) tCAGTAACGTTTTCACCAATGAACCGGCGCTGCGTCTTGGGCGTAAACTGATTGAGGCAACGtt > 1:2971753/1‑64 (MQ=255) tCAGTAACGTTTTCACCAATGAACCGGCGCTGCGTCTTGGGCGTAAACTGATTGAGGCAACGtt > 1:294912/1‑64 (MQ=255) tCAGTAACGTTTTCACCAATGAACCGGCGCTGCGTCTTGGGCGTAAACTGATTGAGGCAACGtt > 1:1076164/1‑64 (MQ=255) tCAGTAACGTTTTCACCAATGAACCGGCGCTGCGTCTTGGGCGTAAACTGATTGAGGCAACGTTTGCCg > 1:1158919/1‑69 (MQ=255) tCAGTAACGTTTTCACCAATGAACCGGCGCTGCGTCTTGGGCGTAAACTGATTGAGGCAACGTTTGCCg > 1:23776/1‑69 (MQ=255) tCAGTAACGTTTTCACCAATGAACCGGCGCTGCGTCTTGGGCGTAAACTGATTGAGGCAACGTTTGCCg > 1:2361191/1‑69 (MQ=255) tCAGTAACGTTTTCACCAATGAACCGGCGCTGCGTCTTGGGCGTAAACTGATTGAGGCAACGTTTGCCg > 1:578908/1‑69 (MQ=255) tCAGTAACGTTTTCACCAATGAACCGGCGCTGCGTCTTGGGCGTAAACTGATTGAGGCAACGTTTGCCg > 1:577009/1‑69 (MQ=255) tCAGTAACGTTTTCACCAATGAACCGGCGCTGCGTCTTGGGCGTAAACTGATTGAGGCAACGTTTGCCg > 1:541389/1‑69 (MQ=255) tCAGTAACGTTTTCACCAATGAACCGGCGCTGCGTCTTGGGCGTAAACTGATTGAGGCAACGTTTGCCg > 1:1350397/1‑69 (MQ=255) | GCCATCCTGCGCTGGTGAACGCGTTAAAAACCCAGGGCGAAACTCTGTGGCATATCAGTAACGTTTTCACCAATGAACCGGCGCTGCGTCTTGGGCGTAAACTGATTGAGGCAACGTTTGCCG > minE/2718366‑2718488 |
| Alignment Legend |
|---|
Aligned base mismatch/match (shaded by quality score): ATCG/ATCG < 3 ≤ ATCG/ATCG < 21 ≤ ATCG/ATCG < 32 ≤ ATCG/ATCG < 36 ≤ ATCG/ATCG |
Unaligned base: atcg Masked matching base: atcg Alignment gap: ‑ Deleted base: ‑ |