| Predicted mutation | |||||||
|---|---|---|---|---|---|---|---|
| evidence | seq id | position | mutation | freq | annotation | gene | description |
| RA | minE | 2,719,183 | A→G | 41.4% | V331V (GTA→GTG) | argD → | bifunctional acetylornithine aminotransferase and succinyldiaminopimelate aminotransferase |
| Read alignment evidence... | |||||||||||
|---|---|---|---|---|---|---|---|---|---|---|---|
| seq id | position | ref | new | freq | score (cons/poly) | reads | annotation | genes | product | ||
| * | minE | 2,719,183 | 0 | A | G | 41.4% | 28.4 / 64.1 | 87 | V331V (GTA→GTG) | argD | bifunctional acetylornithine aminotransferase and succinyldiaminopimelate aminotransferase |
| Reads supporting (aligned to +/- strand): ref base A (29/22); new base G (9/27); total (38/49) | |||||||||||
| Fisher's exact test for biased strand distribution p-value = 4.26e-03 | |||||||||||
| Kolmogorov-Smirnov test that lower quality scores support variant p-value = 7.71e-01 | |||||||||||
GGCATTCAGGCGAAACGCCAGCGTTTTGTTGACCATCTGCAGAAGATCGATCAGCAGTACGATGTATTTAGCGATATTCGCGGTATGGGGCTGTTGATTGGCGCAGAGCTGAAACCACAGTACAAAGG > minE/2719118‑2719245 | ggCATTCAGGCGAAACGCCAGCGTTTTGTTGACCATCTGCAGAAGATCGATCAGCAGTACGATGTAttt < 1:1258015/69‑1 (MQ=255)ggCATTCAGGCGAAACGCCAGCGTTTTGTTGACCATCTGCAGAAGATCGATCAGCAGTACGATGTAttt < 1:1795277/69‑1 (MQ=255) cATTCAGGCGAAACGCCAGCGTTTTGTTGACCATCTGCAGAAGATCGATCAGCAGTACGATGTATTTa > 1:1472509/1‑68 (MQ=255) cATTCAGGCGAAACGCCAGCGTTTTGTTGACCATCTGCAGAAGATCGATCAGCAGTACGATGTATTTa > 1:585490/1‑68 (MQ=255) cATTCAGGCGAAACGCCAGCGTTTTGTTGACCATCTGCAGAAGATCGATCAGCAGTACGATGTATTTa > 1:462291/1‑68 (MQ=255) cATTCAGGCGAAACGCCAGCGTTTTGTTGACCATCTGCAGAAGATCGATCAGCAGTACGATGTATTTa > 1:2294225/1‑68 (MQ=255) cATTCAGGCGAAACGCCAGCGTTTTGTTGACCATCTGCAGAAGATCGATCAGCAGTACGATGTATTTa > 1:1245543/1‑68 (MQ=255) cATTCAGGCGAAACGCCAGCGTTTTGTTGACCATCTGCAGAAGATCGATCAGCAGTACGATGTATTTa > 1:3009700/1‑68 (MQ=255) cATTCAGGCGAAACGCCAGCGTTTTGTTGACCATCTGCAGAAGATCGATCAGCAGTACGATGTATTTa > 1:2224604/1‑68 (MQ=255) cATTCAGGCGAAACGCCAGCGTTTTGTTGACCATCTGCAGAAGATCGATCAGCAGTACGATGTATTTa > 1:2686671/1‑68 (MQ=255) cATTCAGGCGAAACGCCAGCGTTTTGTTGACCATCTGCAGAAGATCGATCAGCAGTACGATGTATTTa > 1:363336/1‑68 (MQ=255) cAGGCGAAACGCCATCGTTTTGTTGACCATCTGCAGAAGATCGATCAGCAGTACGATGTATTTAGCGat < 1:1447415/69‑1 (MQ=255) cAGGCGAAACGCCAGTGTTTTGTTGACCATCTGCAGAAGATCGATCAGCAGTACGATGTATTTAGCGat > 1:3319883/1‑69 (MQ=255) cAGGCGAAACGCCAGCGTTTTGTTGACCATCTGCAGAAGATCGATCAGCAGTACGATGTATTTAGCGat < 1:3423900/69‑1 (MQ=255) cAGGCGAAACGCCAGCGTTTTGTTGACCATCTGCAGAAGATCGATCAGCAGTACGATGTATTTAGCGat < 1:1871459/69‑1 (MQ=255) cAGGCGAAACGCCAGCGTTTTGTTGACCATCTGCAGAAGATCGATCAGCAGTACGATGTATTTAGCGat < 1:32611/69‑1 (MQ=255) cAGGCGAAACGCCAGCGTTTTGTTGACCATCTGCAGAAGATCGATCAGCAGTACGATGTATTTAGCGat < 1:3166246/69‑1 (MQ=255) cAGGCGAAACGCCAGCGTTTTGTTGACCATCTGCAGAAGATCGATCAGCAGTACGATGTATTTAGCGat < 1:146098/69‑1 (MQ=255) cAGGCGAAACGCCAGCGTTTTGTTGACCATCTGCAGAAGATCGATCAGCAGTACGATGTATTTAGCGat < 1:101748/69‑1 (MQ=255) cAGGCGAAACGCCAGCGTTTTGTTGACCATCTGCAGAAGATCGATCAGCAGTACGATGTATTTAGCGat < 1:660942/69‑1 (MQ=255) cAGGCGAAACGCCAGCGTTTTGTTGACCATCTGCAGAAGATCGATCAGCAGTACGATGTATTTAGCGat < 1:1313199/69‑1 (MQ=255) cAGGCGAAACGCCAGCGTTTTGTTGACCATCTGCAGAAGATCGATCAGCAGTACGATGTATTTAGCGat < 1:2865005/69‑1 (MQ=255) cAGGCGAAACGCCAGCGTTTTGTTGACCATCTGCAGAAGATCGATCAGCAGTACGATGTATTTAGCGat < 1:824282/69‑1 (MQ=255) ggCGAAACGCCAGCGTTTTGTTGACCATCTGCAGAAGATCGATCAGCAGTACGATGTATTTAGCGata < 1:241361/68‑1 (MQ=255) gCGAAACGCCAGCGTTTTGTTGACCATCTGCAGAAGATCGATCAGCAGTACGATGTATTTAGCGATAtt < 1:1610964/69‑1 (MQ=255) cGCCAGCGTTTTGTTGACCATCTGCAGAAGATCGATCAGCAGTACGATGTATTTAGCGATATTCGCGGt < 1:1321098/69‑1 (MQ=255) cGCCAGCGTTTTGTTGACCATCTGCAGAAGATCGATCAGCAGTACGATGTATTTAGCGATATTCGCGGt < 1:18344/69‑1 (MQ=255) cAGCGTTTTGTTGACCATCTGCAGAAGATCGATCAGCAGTACGATGTATTTAGCGATAtt < 1:39965/60‑1 (MQ=255) aGCGTTTTGTTGACCATCTGCAGAAGATCGATCAGCAGTACGATGTATTTAGCGat < 1:1446402/56‑1 (MQ=255) ttgttgACCATCTGCAGAAGATCGATCAGCAGTACGATGTATTTAGCGATATTCGCGGTATGGGGCTg > 1:1811646/1‑68 (MQ=255) ttgttgACCATCTGCAGAAGATCGATCAGCAGTACGATGTATTTAGCGATATTCGCGGTATGGGGCTg > 1:2994885/1‑68 (MQ=255) ttgttgACCATCTGCAGAAGATCGATCAGCAGTACGATGTATTTAGCGATATTCGCGGTATGGGGCTg > 1:2530055/1‑68 (MQ=255) ttgttgACCATCTGCAGAAGATCGATCAGCAGTACGATGTATTTAGCGATATTCGCGGTATGGGGCTg > 1:283299/1‑68 (MQ=255) ttgttgACCATCTGCAGAAGATCGATCAGCAGTACGATGTATTTAGCGATATTCGCGGTATGGGGCTg > 1:1861572/1‑68 (MQ=255) ttgttgACCATCTGCAGAAGATCGATCAGCAGTACGATGTATTTAGCGATATTCGCGGTATGGGGCTg > 1:1179653/1‑68 (MQ=255) ttgttgACCATCTGCAGAAGATCGATCAGCAGTACGATGTATTTAGCGATATTCGCGGTATGGGGCTg > 1:421032/1‑68 (MQ=255) ttgttgACCATCTGAAGAAGATCGATCAGCAGTACGATGTATTTAGCGATATTCGCGGTATGGGGCTg > 1:3224629/1‑68 (MQ=255) cgagACCATCTGCAGAAGATCGATCAGCAGTACGATGTATTTAGCGATATTCGCGGTATGGGGCTGTTg < 1:2726330/66‑1 (MQ=255) cgagACCATCTGCAGAAGATCGATCAGCAGTACGATGTATTTAGCGATATTCGCGGTATGGGGCTGTTg < 1:2479535/66‑1 (MQ=255) atcATTTGCAGAAGATCGATCAGCAGTACGATGTGTTTAGCGATATTCGCGGTATGGGGCTGTTGATTg > 1:3281118/3‑69 (MQ=255) aCCATTTGCAGAAGATCGATGAGCAGTACGATGTGTTTAGCGATATTCGCGGTATGGGGCTGTTGATTg > 1:1057078/1‑69 (MQ=255) aCCATTTGCAGAAGATCGATCAGCAGTACGATGTGTTTAGCGATATTCGCGGTATGGGGCTGTTGATTg > 1:1207066/1‑69 (MQ=255) aCCATTTGCAGAAGATCGATCAGCAGTACGATGTGTTTAGCGATATTCGCGGTATGGGGCTGTTGATTg > 1:365247/1‑69 (MQ=255) aCCATTTGCAGAAGATCGATCAGCAGTACGATGTGTTTAGCGATATTCGCGGTATGGGGCTGTTGATTg > 1:1049349/1‑69 (MQ=255) aCCATTTGCAGAAGATCGATCAGCAGTACGATGTGTTTAGCGATATTCGCGGTATGGGGCTGTTGATTg > 1:301510/1‑69 (MQ=255) aCCATTTGCAGAAGATCGATCAGCAGTACGATGTGTTTAGCGATATTCGCGGTATGGGGCTGTTGATTg > 1:1337053/1‑69 (MQ=255) aCCATTTGCAGAAGATCGATCAGCAGTACGATGTGTTTAGCGATATTCGCGGTATGGGGCTGTTGATTg > 1:1550217/1‑69 (MQ=255) aCCATTTGCAGAAGATCGATCAGCAGTACGATGTGTTTAGCGATATTCGCGGTATGGGGCTGTTGATTg > 1:450210/1‑69 (MQ=255) ccATTTGCAGAAGATCGATCAGCAGTACGATGTGTTTAGCGATATTCGCGGTATTGGGCTGTTGATTg < 1:512294/68‑1 (MQ=255) ccATTTGCAGAAGATCGATCAGCAGTACGATGTGTTTAGCGATATTCGCGGTATGGGGCTGTTGATTg < 1:3102638/68‑1 (MQ=255) ccATTTGCAGAAGATCGATCAGCAGTACGATGTGTTTAGCGATATTCGCGGTATGGGGCTGTTGATTg < 1:3264155/68‑1 (MQ=255) ccATTTGCAGAAGATCGATCAGCAGTACGATGTGTTTAGCGATATTCGCGGTATGGGGCTGTTGATTg < 1:437554/68‑1 (MQ=255) ccATTTGCAGAAGATCGATCAGCAGTACGATGTGTTTAGCGATATTCGCGGTATGGGGCTGTTGATTg < 1:2379263/68‑1 (MQ=255) ccATTTGCAGAAGATCGATCAGCAGTACGATGTGTTTAGCGATATTCGCGGTATGGGGCTGTTGATTg < 1:674604/68‑1 (MQ=255) ccATTTGCAGAAGATCGATCAGCAGTACGATGTGTTTAGCGATATTCGCGGTATGGGGCTGTTGATTg < 1:703700/68‑1 (MQ=255) ccATTTGCAGAAGATCGATCAGCAGTACGATGTGTTTAGCGATATTCGCGGTATGGGGCTGTTGATTg < 1:2748342/68‑1 (MQ=255) ccATTTGCAGAAGATCGATCAGCAGTACGATGTGTTTAGCGATATTCGCGGTATGGGGCTGTTGATTg < 1:2142972/68‑1 (MQ=255) ccATTTGCAGAAGATCGATCAGCAGTACGATGTGTTTAGCGATATTCGCGGTATGGGGCTGTTGATTg < 1:1022636/68‑1 (MQ=255) ccATTTGCAGAAGATCGATCAGCAGTACGATGTGTTTAGCGATATTCGCGGTATGGGGCTGTTGATTg < 1:1118733/68‑1 (MQ=255) ccATTTGCAGAAGATCGATCAGCAGTACGATGTGTTTAGCGATATTCGCGGTATGGGGCTGTTGATTg < 1:135702/68‑1 (MQ=255) ccATTTGCAGAAGATCGATCAGCAGTACGATGTGTTTAGCGATATTCGCGGTATGGGGCTGTTGATTg < 1:1671233/68‑1 (MQ=255) ccATTTGCAGAAGATCGATCAGCAGTACGATGTGTTTAGCGATATTCGCGGTATGGGGCTGTTGATTg < 1:1696448/68‑1 (MQ=255) ccATTTGCAGAAGATCGATCAGCAGTACGATGTGTTTAGCGATATTCGCGGTATGGGGCTGTTGATTg < 1:179297/68‑1 (MQ=255) ccATTTGCAGAAGATCGATCAGCAGTACGATGTGTTTAGCGATATTCGCGGTATGGGGCTGTTGATTg < 1:267962/68‑1 (MQ=255) ccATTTGCAGAAGATCGATCAGCAGTACGATGTGTTTAGCGATATTCGCGGTATGGGGCTGTTGATTg < 1:228335/68‑1 (MQ=255) ccATTTGCAGAAGATCGATCAGCAGTACGATGTGTTTAGCGATATTCGCGGTATGGGGCTGTTGATTg < 1:2296776/68‑1 (MQ=255) ccATTTGCAGAAGATCGATCAGCAGTACGATGTGTTTAGCGATATTCGCGGTATGGGGCTGTTGATTg < 1:2303215/68‑1 (MQ=255) ccATTTGCAGAAGATCGATCAGCAGTACGATGTGTTTAGCGATATTCGCGGTATGGGGCTGTTGATTg < 1:2309643/68‑1 (MQ=255) ccATTTGCAGAAGATCGATCAGCAGTACGATGTGTTTAGCGATATTCGCGGTATGGGGCTGTTGATTg < 1:2603394/68‑1 (MQ=255) ccATTTGCAGAAGATCGATCAGCAGTACGATGTGTTTAGCGATATTCGCGGTATGGGGCTGTTGATTg < 1:2379355/68‑1 (MQ=255) ccATTTGCAGAAGATCGATCAGCAGTACGATGTGTTTAGCGATATTCGCGGTATGGGGCTGTTGATTg < 1:241884/68‑1 (MQ=255) ccATTTGCAGAAGATCGATCAGCAGTACGATGTGTTTAGCGATATTCGCGGTATGGGGCTGTTGATTg < 1:2566897/68‑1 (MQ=255) ccATTTGCAGAAGATCGATCAGCAGTACGATGTGTTTAGCGATATTCGCGGTATGGGGCTGTTGATTg < 1:252489/68‑1 (MQ=255) cATTTGCAGAAGATCGATCAGCAGTACGATGTGTTTAGCGATATTCGCGGTATGGGGCTGTTGATTg < 1:1719668/67‑1 (MQ=255) ttttGCAGAAGATCGATCAGCAGTACGATGTGTTTTGCGATTTTGGCGGTATGGGGCTGTTGATTg < 1:2033035/63‑1 (MQ=255) tGCAGAAGATCGATCAGCAGTACGATGTATTTAGCGATATTCGCGGTATGGGGCTGTTg > 1:230219/1‑59 (MQ=255) tGCAGAAGATCGATCAGCAGTACGATGTATTTAGCGATATTCGCGGTATGGGGCTGTTg > 1:787549/1‑59 (MQ=255) tGCAGAAGATCGATCAGCAGTACGATGTATTTAGCGATATTCGCGGTATGGGGCTGTTg > 1:1114450/1‑59 (MQ=255) tGCAGAAGATCGATCAGCAGTACGATGTATTTAGCGATATTCGCGGTATGGGGCTGTTg > 1:493637/1‑59 (MQ=255) tGCAGAAGATCGATCAGCAGTACGATGTATTTAGCGATATTCGCGGTATGGGGCTGTTg > 1:1783921/1‑59 (MQ=255) tGCAGAAGATCGATCAGCAGTACGATGTATTTAGCGATATTCGCGGTATGGGGCTGTTg > 1:2277780/1‑59 (MQ=255) tGCAGAAGATCGATCAGCAGTACGATGTATTTAGCGATATTCGCGGTATGGGGCTGTTGATTGGCGCag > 1:1675475/1‑69 (MQ=255) tGCAGAAGATCGATCAGCAGTACGATGTATTTAGCGATATTCGCGGTATGGGGCTGTTGATTGGCGCag > 1:2834391/1‑69 (MQ=255) tGCAGAAGATCGATCAGCAGTACGATGTATTTAGCGATATTCGCGGTATGGGGCTGTTGATTGGCGCag > 1:2311850/1‑69 (MQ=255) tcAGCAGTACGATGTATTTAGCGATATTCGCGGTATGGGGCTGTTGATTGGCGCAGAGCTGAAACcac < 1:2465753/68‑1 (MQ=255) cGATGTATTTAGCGATATTCGCGGTATGGGGCTGTTGATTGGCGCAGAGCTGAAACCACAGTACAAAgg > 1:157440/1‑69 (MQ=255) cGATGTATTTAGCGATATTCGCGGTATGGGGCTGTTGATTGGCGCAGAGCTGAAACCACAGTACAAAgg > 1:441150/1‑69 (MQ=255) | GGCATTCAGGCGAAACGCCAGCGTTTTGTTGACCATCTGCAGAAGATCGATCAGCAGTACGATGTATTTAGCGATATTCGCGGTATGGGGCTGTTGATTGGCGCAGAGCTGAAACCACAGTACAAAGG > minE/2719118‑2719245 |
| Alignment Legend |
|---|
Aligned base mismatch/match (shaded by quality score): ATCG/ATCG < 3 ≤ ATCG/ATCG < 14 ≤ ATCG/ATCG < 32 ≤ ATCG/ATCG < 36 ≤ ATCG/ATCG |
Unaligned base: atcg Masked matching base: atcg Alignment gap: ‑ Deleted base: ‑ |