Predicted mutation
evidence seq id position mutation freq annotation gene description
RA minE 2,790,362 C→T 45.4% T469T (ACC→ACT pgi → glucosephosphate isomerase

Read alignment evidence...
  seq id position ref new freq score (cons/poly) reads annotation genes product
*minE2,790,3620CT45.4% 20.4 / 79.7 99T469T (ACC→ACTpgiglucosephosphate isomerase
Reads supporting (aligned to +/- strand):  ref base C (18/36);  new base T (30/15);  total (48/51)
Fisher's exact test for biased strand distribution p-value = 1.24e-03
Kolmogorov-Smirnov test that lower quality scores support variant p-value = 9.58e-01

Only 100 of 101 total aligned reads displayed.

GTAAAGATCCGGCAACGCTTGACTACGTGGTGCCGTTCAAAGTATTCGAAGGTAACCGCCCGACCAACTCCATCCTGCTGCGTGAAATCACTCCGTTCAGCCTGGGTGCGTTGATTGCGCTGTATGAGCACAA  >  minE/2790298‑2790430
                                                                |                                                                    
gTAAAGATCCGGCAACGCTTGACTACGTGGTGCCGTTCAAAGTATTCGAAGGTAACCGCCCGACCAAc                                                                   >  1:1811460/1‑68 (MQ=255)
gTAAAGATCCGGCAACGCTTGACTACGTGGTGCCGTTCAAAGTATTCGAAGGTAACCGCCCGACCAAc                                                                   >  1:2411582/1‑68 (MQ=255)
 tAAAGATCCGGCAACGCTTGACTACGTGGTGCCGTTCAAAGTGTTCGAAGGTAACCGCCCGACTAACt                                                                  >  1:491264/1‑68 (MQ=255)
 tAAAGATCCGGCAACGCTTGACTACGTGGTGCCGTTCAAAGTGTTCGAAGGTAACCGCCCGACTAACTc                                                                 >  1:2273335/1‑69 (MQ=255)
 tAAAGATCCGGCAACGCTTGACTACGTGGTGCCGTTCAAAGTGTTCGAAGGTAACCGCCCGACTAACTc                                                                 >  1:3162159/1‑69 (MQ=255)
 tAAAGATCCGGCAACGCTTGACTACGTGGTGCCGTTCAAAGTGTTCGAAGGTAACCGCCCGACTAACTc                                                                 >  1:2832866/1‑69 (MQ=255)
 tAAAGATCCGGCAACGCTTGACTACGTGGTGCCGTTCAAAGTGTTCGAAGGTAACCGCCCGACTAACTc                                                                 >  1:1392192/1‑69 (MQ=255)
 tAAAGATCCGGCAACGCTTGACTACGTGGTGCCGTTCAAAGTGTTCGAAGGTAACCGCCCGACTAACTc                                                                 >  1:1241072/1‑69 (MQ=255)
 tAAAGATCCGGCAACGCTTGACTACGTGGTGCCGTTCAAAGTGTTCGAAGGTAACCGCCCGACTAACTc                                                                 >  1:2230343/1‑69 (MQ=255)
 tAAAGATCCGGCAACGCTTGACTACGTGGTGCCGTTCAAAGTGTTCGAAGGTAACCGCCCGACTAACTc                                                                 >  1:1143218/1‑69 (MQ=255)
 tAAAGATCCGGCAACGCTTGACTACGTGGTGCCGTTCAAAGTGTTCGAAGGTAACCGCCCGACTAACTc                                                                 >  1:1631713/1‑69 (MQ=255)
 tAAAGATCCGGCAACGCTTGACTACGTGGTGCCGTTCAAAGTGTTCGAAGGTAACCGCCCGACTAACTc                                                                 >  1:1138935/1‑69 (MQ=255)
 tAAAGATCCGGCAACGCTTGACTACGTGGTGCCGTTCAAAGTGTTCGAAGGTAACCGCCCGACTAACTc                                                                 >  1:2945126/1‑69 (MQ=255)
 tAAAGATCCGGCAACGCTTGACTACGTGGTGCCGTTCAAAGTATTCGAAGGTAACCGCCCGACCAACTc                                                                 <  1:2386668/69‑1 (MQ=255)
 tAAAGATCCGGCAACGCTTGACTACGTGGTGCCGTTCAAAGTATTCGAAGGTAACCGCCCGACCAACTc                                                                 <  1:400420/69‑1 (MQ=255)
 tAAAGATCCGGCAACGCTTGACTACGTGGTGCCGTTCAAAGTATTCGAAGGTAACCGCCCGACCAACTc                                                                 <  1:2382691/69‑1 (MQ=255)
 tAAAGATCCGGCAACGCTTGACTACGTGGTGCCGTTCAAAGTATTCGAAGGTAACCGCCCGACCAACTc                                                                 <  1:3239682/69‑1 (MQ=255)
 tAAAGATCCGGCAACGCTTGACTACGTGGTGCCGTTCAAAGTATTCGAAGGTAACCGCCCGACCAACTc                                                                 <  1:800049/69‑1 (MQ=255)
 tAAAGATCCGGCAACGCTTGACTACGTGGTGCCGTTCAAAGTATTCGAAGGTAACCGCCCGACCAACTc                                                                 <  1:2985445/69‑1 (MQ=255)
 tAAAGATCCGGCAACGCTTGACTACGTGGTGCCGTTCAAAGTATTCGAAGGTAACCGCCCGACCAACTc                                                                 <  1:2844644/69‑1 (MQ=255)
 tAAAGATCCGGCAACGCTTGACTACGTGGTGCCGTTCAAAGTATTCGAAGGTAACCGCCCGACCAACTc                                                                 <  1:1556962/69‑1 (MQ=255)
  aaaGATCCGGCAACGCTTGACTACGTGGTGCCGTTCAAAGTATTCGAAGGTAACCGCCCGACCAACTc                                                                 <  1:2800227/68‑1 (MQ=255)
   aaGATCCGGCAACGGTTGACTACGTGGTGCCGTTCAAAGTATTCGAAGGTAACCGCCCGACCAACTCCa                                                               <  1:2611067/69‑1 (MQ=255)
   aaGATCCGGCAACGCTTGACTACGTGGTGCCGTTCAAAGTATTCGAAGGTAACCGCCCGACCAACTCCa                                                               <  1:1906265/69‑1 (MQ=255)
     gATCCGGCAACGCTTGACTACGTGGTGCCGTTCAAAGTATTCGAAGGTAACCGCCCGACCAACTCCAt                                                              <  1:876045/68‑1 (MQ=255)
             aaCGCTTGACTACGTGGTGCCGTTCAAAGTATTCGAAGGTAACCGCCCGACCAACTCCATCCtgctgc                                                      >  1:1187133/1‑68 (MQ=255)
                      cTACGTGGTGCCGTTCAAAGTATTCGAAGGTAACCGCCCGACCAACTCCATCCTGCTGCGTGAAATc                                              <  1:1937384/67‑1 (MQ=255)
                               gCCGTTCAAAGTATTCGAAGGTAACCGCCCGACCAACTCCATCCTGCTGCGTGAAATCTCTCCGTTCAg                                   <  1:2949598/69‑1 (MQ=255)
                               gCCGTTCAAAGTATTCGAAGGTAACCGCCCGACCAACTCCATCCTGCTGCGTGAAATCACTCCGTTCAg                                   <  1:2594002/69‑1 (MQ=255)
                               gCCGTTCAAAGTATTCGAAGGTAACCGCCCGACCAACTCCATCCTGCTGCGTGAAATCACTCCGTTCAg                                   <  1:2865596/69‑1 (MQ=255)
                               gCCGTTCAAAGTATTCGAAGGTAACCGCCCGACCAACTCCATCCTGCTGCGTGAAATCACTCCGTTCAg                                   <  1:2914337/69‑1 (MQ=255)
                               gCCGTTCAAAGTATTCGAAGGTAACCGCCCGACCAACTCCATCCTGCTGCGTGAAATCACTCCGTTCAg                                   <  1:2643113/69‑1 (MQ=255)
                               gCCGTTCAAAGTATTCGAAGGTAACCGCCCGACCAACTCCATCCTGCTGCGTGAAATCACTCCGTTCAg                                   <  1:1926546/69‑1 (MQ=255)
                               gCCGTTCAAAGTATTCGAAGGTAACCGCCCGACCAACTCCATCCTGCTGCGTGAAATCACTCCGTTCAg                                   <  1:1686105/69‑1 (MQ=255)
                               gCCGTTCAAAGTATTCGAAGGTAACCGCCCGACCAACTCCATCCTGCTGCGTGAAATCACTCCGTTCAg                                   <  1:2918942/69‑1 (MQ=255)
                               gCCGTTCAAAGTATTCGAAGGTAACCGCCCGACCAACTCCATCCTGCTGCGTGAAATCACTCCGTTCAg                                   <  1:1021994/69‑1 (MQ=255)
                               gCCGTTCAAAGTATTCGAAGGTAACCGCCCGACCAACTCCATCCTGCTGCGTGAAATCACTCCGTTCAg                                   <  1:695260/69‑1 (MQ=255)
                               gCCGTTCAAAGTATTCGAAGGTAACCGCCCGACCAACTCCATCCTGCTGCGTGAAATCACTCCGTTCAg                                   <  1:673495/69‑1 (MQ=255)
                               gCCGTTCAAAGTATTCGAAGGTAACCGCCCGACCAACTCCATCCTGCTGCGTGAAATCACTCCGTTCAg                                   <  1:1286199/69‑1 (MQ=255)
                               gCCGTTCAAAGTATTCGAAGGTAACCGCCCGACCAACTCCATCCTGCTGCGTGAAATCACTCCGTTCAg                                   <  1:1847772/69‑1 (MQ=255)
                               gCCGTTCAAAGTATTCGAAGGTAACCGCCCGACCAACTCCATCCTGCTGCGTGAAATCACTCCGTTCAg                                   <  1:1884267/69‑1 (MQ=255)
                                ccGTTCAAAGTATTCGAAGGTAACCGCCCGACCAACTCCATCCTGCTGCGTGAAATCACTCCGTTCAg                                   <  1:1140291/68‑1 (MQ=255)
                                   ttCAAAGTATTCGAAGGTAACCGCCCGACCAACTCCATCCTGCTGCGTGAAATCACTCCGTTCAGCCTg                               <  1:2889180/69‑1 (MQ=255)
                                   ttCAAAGTATTCGAAGGTAACCGCCCGACCAACTCCATCCTGCTGCGTGAAATCACTCCGTTCAGCCTg                               <  1:1609013/69‑1 (MQ=255)
                                   ttCAAAGTATTCGAAGGTAACCGCCCGACCAACTCCATCCTGCTGCGTGAAATCACTCCGTTCAGCCTg                               <  1:1575916/69‑1 (MQ=255)
                                   ttCAAAGTATTCGAAGGTAACCGCCCGACCAACTCCATCCTGCTGCGTGAAATCACTCCGTTCAGCCTg                               <  1:2974171/69‑1 (MQ=255)
                                   ttCAAAGTATTCGAAGGTAACCGCCCGACCAACTCCATCCTGCTGCGTGAAATCACTCCGTTCAGCCTg                               <  1:3170899/69‑1 (MQ=255)
                                   ttCAAAGTATTCGAAGGTAACCGCCCGACCAACTCCATCCTGCTGCGTGAAATCACTCCGTTCAGCCTg                               <  1:125492/69‑1 (MQ=255)
                                   ttCAAAGTATTCGAAGGTAACCGCCCGACCAACTCCATCCTGCTGCGTGAAATCACTCCGTTCAGCCTg                               <  1:2567775/69‑1 (MQ=255)
                                     cAAAGTATTCGAAGGTAACCGCCCGACCAACTCCATCCTGCTGCGTGAAATCACTCCg                                        >  1:3284749/1‑58 (MQ=255)
                                     cAAAGTATTCGAAGGTAACCGCCCGACCAACTCCATCCTGCTGCGTGAAATCACTCCGTTCAGCCTggg                             >  1:2159632/1‑69 (MQ=255)
                                     cAAAGTATTCGAAGGTAACCGCCCGACCAACTCCATCCTGCTGCGTGAAATCACTCCGTTCAGCCTggg                             >  1:2922884/1‑69 (MQ=255)
                                     cAAAGTATTCGAAGGTAACCGCCCGACCAACTCCATCCTGCTGCGTGAAATCACTCCGTTCAGCCTgg                              >  1:2100312/1‑68 (MQ=255)
                                          tATTCGAAGGTAACCGCCCGACCAACTCCATCCTGCTGCGTGAAATCACTCCGTTCAGCCTGGGTGCg                         >  1:2028366/1‑68 (MQ=255)
                                            ttCGAAGGTAACCGCCCTACCAACTCCATCCTGCTGCGTGAAATCACTCCGTTCAGCCTg                               >  1:878137/1‑60 (MQ=255)
                                            ttCGAAGGTAACCGCCCGACCAACTCCATCCTGGTGCGTGAAATCACTCCGTTCAGCCTg                               >  1:2306701/1‑60 (MQ=255)
                                            ttCGAAGGTAACCGCCCGACCAACTCCATCCTGCTGCGTGAAATCACTCCGTTCAGCCTg                               >  1:1055148/1‑60 (MQ=255)
                                            ttCGAAGGTAACCGCCCGACCAACTCCATCCTGCTGCGTGAAATCACTCCGTTCAGCCTg                               >  1:2798197/1‑60 (MQ=255)
                                            ttCGAAGGTAACCGCCCGACCAACTCCATCCTGCTGCGTGAAATCACTCCGTTCAGCCTg                               >  1:2382710/1‑60 (MQ=255)
                                            ttCGAAGGTAACCGCCCGACCAACTCCATCCTGCTGCGTGAAATCACTCCGTTCAGCCTg                               >  1:742515/1‑60 (MQ=255)
                                            ttCGAAGGTAACCGCCCGACCAACTCCATCCTGCTGCGTGAAATCACTCCGTTCAGCCTg                               >  1:2374671/1‑60 (MQ=255)
                                            ttCGAAGGTAACCGCCCGACCAACTCCATCCTGCTGCGTGAAATCACTCCGTTCAGCCTg                               >  1:1150437/1‑60 (MQ=255)
                                            ttCGAAGGTAACCGCCCGACCAACTCCATCCTGCTGCGTGAAATCACTCCGTTCAGCCTg                               >  1:1356773/1‑60 (MQ=255)
                                            ttCGAAGGTAACCGCCCGACCAACTCCATCCTGCTGCGTGAAATCACTCCGTTCAGCCTg                               >  1:1751768/1‑60 (MQ=255)
                                              cGAAGGTAACCGCCCGACTAACTCCATCCTGCTGCGTGAAATCACTCCGTTCAGCCTGGGTGCGTTGa                     <  1:1514289/68‑1 (MQ=255)
                                              cGAAGGTAACCGCCCGACTAACTCCATCCTGCTGCGTGAAATCACTCCGTTCAGCCTGGGTGCGTTGa                     <  1:2653288/68‑1 (MQ=255)
                                              cGAAGGTAACCGCCCGACTAACTCCATCCTGCTGCGTGAAATCACTCCGTTCAGCCTGGGTGCGTTGa                     <  1:1479697/68‑1 (MQ=255)
                                              cGAAGGTAACCGCCCGACTAACTCCATCCTGCTGCGTGAAATCACTCCGTTCAGCCTGGGTGCGTTGa                     <  1:3407158/68‑1 (MQ=255)
                                              cGAAGGTAACCGCCCGACTAACTCCATCCTGCTGCGTGAAATCACTCCGTTCAGCCTGGGTGCGTTGa                     <  1:360498/68‑1 (MQ=255)
                                              cGAAGGTAACCGCCCGACTAACTCCATCCTGCTGCGTGAAATCACTCCGTTCAGCCTGGGTGCGTTGa                     <  1:1287757/68‑1 (MQ=255)
                                              cGAAGGTAACCGCCCGACTAACTCCATCCTGCTGCGTGAAATCACTCCGTTCAGCCTGGGTGCGTTGa                     <  1:525573/68‑1 (MQ=255)
                                              cGAAGGTAACCGCCCGACTAACTCCATCCTGCTGCGTGAAATCACTCCGTTCAGCCTGGGTGCGTTGa                     <  1:867830/68‑1 (MQ=255)
                                              cGAAGGTAACCGCCCGACTAACTCCATCCTGCTGCGTGAAATCACTCCGTTCAGCCTGGGTGCGTTGa                     <  1:1528297/68‑1 (MQ=255)
                                              cGAAGGTAACCGCCCGACTAACTCCATCCTGCTGCGTGAAATCACTCCGTTCAGCCTGGGTGCGTTGa                     <  1:2715926/68‑1 (MQ=255)
                                              cGAAGGTAACCGCCCGACTAACTCCATCCTGCTGCGTGAAATCACTCCGTTCAGCCTGGGTGCGTTGa                     <  1:2828328/68‑1 (MQ=255)
                                              cGAAGGTAACCGCCCGACTAACTCCATCCTGCTGCGTGAAATCACTCCGTTCAGCCTGGGTGCGTTGa                     <  1:2032748/68‑1 (MQ=255)
                                              cGAAGGTAACCGCCCGACTAACTCCATCCTGCTGCGTGAAATCACTCCGTTCAGCCTGGGTGCGTTGa                     <  1:1682289/68‑1 (MQ=255)
                                              cGAAGGTAACCGCCCGACTAACTACATCCTGCTGCGTGAAATCACTCCGTTCAGCCTGGGTGCGTTGa                     <  1:2992653/68‑1 (MQ=255)
                                               gAAGGTAACCGCCCGACTAACTCCATCCTGCTGCGTGAAATCACTCCGTTCAGCCTGGGTGCGTTGa                     <  1:174151/67‑1 (MQ=255)
                                                           ccGACTAACTCCATCCTGCTGCGTGAAATCACTCCGTTCAGCCTGGGTGCGTTGATTGCGCTGTATGa        >  1:1085400/1‑68 (MQ=255)
                                                           ccGACTAACTCCATCCTGCTGCGTGAAATCACTCCGTTCAGCCTGGGTGCGTTGATTGCGCTGTATGa        >  1:313806/1‑68 (MQ=255)
                                                           ccGACTAACTCCATCCTGCTGCGTGAAATCACTCCGTTCAGCCTGGGTGCGTTGATTGCGCTGTATGAg       >  1:1321989/1‑69 (MQ=255)
                                                           ccGACTAACTCCATCCTGCTGCGTGAAATCACTCCGTTCAGCCTGGGTGCGTTGATTGCGCTGTATGAg       >  1:2644766/1‑69 (MQ=255)
                                                           ccGACTAACTCCATCCTGCTGCGTGAAATCACTCCGTTCAGCCTGGGTGCGTTGATTGCGCTGTATGAg       >  1:1113098/1‑69 (MQ=255)
                                                           ccGACTAACTCCATCCTGCTGCGTGAAATCACTCCGTTCAGCCTGGGTGCGTTGATTGCGCTGTATGAg       >  1:678762/1‑69 (MQ=255)
                                                           ccGACTAACTCCATCCTGCTGCGTGAAATCACTCCGTTCAGCCTGGGTGCGTTGATTGCGCTGTATGAg       >  1:1148205/1‑69 (MQ=255)
                                                           ccGACTAACTCCATCCTGCTGCGTGAAATCACTCCGTTCAGCCTGGGTGCGTTGATTGCGCTGTATGAg       >  1:662340/1‑69 (MQ=255)
                                                           ccGACTAACTCCATCCTGCTGCGTGAAATCACTCCGTTCAGCCTGGGTGCGTTGATTGCGCTGTATGAg       >  1:594997/1‑69 (MQ=255)
                                                           ccGACTAACTCCATCCTGCTGCGTGAAATCACTCCGTTCAGCCTGGGTGCGTTGATTGCGCTGTATGAg       >  1:552206/1‑69 (MQ=255)
                                                           ccGACTAACTCCATCCTGCTGCGTGAAATCACTCCGTTCAGCCTGGGTGCGTTGATTGCGCTGTATGAg       >  1:537477/1‑69 (MQ=255)
                                                           ccGACTAACTCCATCCTGCTGCGTGAAATCACTCCGTTCAGCCTGGGTGCGTTGATTGCGCTGTATGAg       >  1:2172597/1‑69 (MQ=255)
                                                           ccGACTAACTCCATCCTGCTGCGTGAAATCACTCCGTTCAGCCTGGGTGCGTTGATTGCGCTGTATGAg       >  1:1976592/1‑69 (MQ=255)
                                                           ccGACTAACTCCATCCTGCTGCGTGAAATCACTCCGTTCAGCCTGGGTGCGTTGATTGCGCTGTATGAg       >  1:379195/1‑69 (MQ=255)
                                                           ccGACTAACTCCATCCTGCTGCGTGAAATCACTCCGTTCAGCCTGGGTGCGTTGATTGCGCTGTATGAg       >  1:370963/1‑69 (MQ=255)
                                                           ccGACTAACTCCATCCTGCTGCGTGAAATCACTCCGTTCAGCCTGGGTGCGTTGATTGCGCTGTATGAg       >  1:1876611/1‑69 (MQ=255)
                                                           ccGACTAACTCCATCCTGCTGCGTGAAATCACTCCGTTCAGCCTGGGTGCGTTGATTGCGCTGTATGAg       >  1:3414370/1‑69 (MQ=255)
                                                           ccGACTAACTCCATCCTGCTGCGTGAAATCACTCCGTTCAGCCTGGGTGCGTTGATTGCGCTGTATGAg       >  1:2959051/1‑69 (MQ=255)
                                                            cGACCAACTCCATCCTGCTGCGTGAAATCACTCCGTTCAg                                   <  1:3005031/40‑1 (MQ=255)
                                                                cAACTCCATCCTGCTGCGTGAAATCACTCCGTTCAGCCTGGGTGCGTTGATTGCGCTGTATGAGCACaa  >  1:1509616/1‑69 (MQ=255)
                                                                cAACTCCATCCTGCTGCGTGAAATCACTCCGTTCAGCCTGGGTGCGTTGATTGCGCTGTATGAGCACaa  >  1:1037206/1‑69 (MQ=255)
                                                                |                                                                    
GTAAAGATCCGGCAACGCTTGACTACGTGGTGCCGTTCAAAGTATTCGAAGGTAACCGCCCGACCAACTCCATCCTGCTGCGTGAAATCACTCCGTTCAGCCTGGGTGCGTTGATTGCGCTGTATGAGCACAA  >  minE/2790298‑2790430

Alignment Legend
Aligned base mismatch/match (shaded by quality score): ATCG/ATCG < 3 ≤ ATCG/ATCG < 27 ≤ ATCG/ATCG < 32 ≤ ATCG/ATCG < 36 ≤ ATCG/ATCG
Unaligned base: atcg    Masked matching base: atcg    Alignment gap:     Deleted base: