| Predicted mutation | |||||||
|---|---|---|---|---|---|---|---|
| evidence | seq id | position | mutation | freq | annotation | gene | description |
| RA | minE | 2,797,905 | A→G | 44.7% | A430A (GCA→GCG) | dinF → | DNA‑damage‑inducible SOS response protein |
| Read alignment evidence... | |||||||||||
|---|---|---|---|---|---|---|---|---|---|---|---|
| seq id | position | ref | new | freq | score (cons/poly) | reads | annotation | genes | product | ||
| * | minE | 2,797,905 | 0 | A | G | 44.7% | 12.1 / 61.6 | 76 | A430A (GCA→GCG) | dinF | DNA‑damage‑inducible SOS response protein |
| Reads supporting (aligned to +/- strand): ref base A (18/24); new base G (10/24); total (28/48) | |||||||||||
| Fisher's exact test for biased strand distribution p-value = 2.44e-01 | |||||||||||
| Kolmogorov-Smirnov test that lower quality scores support variant p-value = 4.03e-01 | |||||||||||
CGCCGCAGGTTTTGCGCTGACGCTCCTTACGCTGCCGTGGCTGGGTAATCATGCTTTGTGGCTGGCATTAACCGTCTTTCTGGCGTTGCGCGGGCTTTCTCTGGCGGCTATCTGGCGGCGTCACTGGCGCAATGG > minE/2797839‑2797973 | cgccgcAGGTTTTGCGCTGACGCTCCTTACGCTGCCGTGGCTGGGTAATCATGCTTTGTGGCTGTCAtt < 1:2545229/69‑1 (MQ=255)cgccgcAGGTTTTGCGCTGACGCTCCTTACGCTGCCGTGGCTGGGTAATCATGCTTTGTGGCTGGCAtt < 1:1539774/69‑1 (MQ=255)cgccgcAGGTTTTGCGCTGACGCTCCTTACGCTGCCGTGGCTGGGTAATCATGCTTTGTGGCTGGCAtt < 1:2701696/69‑1 (MQ=255)cgccgcAGGTTTTGCGCTGACGCTCCTTACGCTGCCGTGGCTGGGTAATCATGCTTTGTGGCTGGCAtt < 1:1616501/69‑1 (MQ=255)cgccgcAGGTTTTGCGCTGACGCTCCTTACGCTGCCGTGGCTGGGTAATCATGCTTTGTGGCTGGCAtt < 1:2162442/69‑1 (MQ=255) gccgcAGGTTTTGCGCTGACGCTCCTTACGCTGCCGTGGCTGGGGAATCATGGTTTGTGGCTGGCGTTa < 1:3247489/69‑1 (MQ=255) gccgcAGGTTTTGCGCTGACGCTCCTTACGCTGCCGTGGCTGGGGAATCATGGTTTGTGGCTGGCGTTa < 1:51548/69‑1 (MQ=255) gccgcAGGTTTTGCGCTGACGCTCCTTACGCTGCCGTGGCTGGGGAATCATGGTTTGTGGCTGGCGTTa < 1:612576/69‑1 (MQ=255) gccgcAGGTTTTGCGCTGACGCTCCTTACGCTGCCGTGGCTGGGGAATCATGGTTTGTGGCTGGCGTTa < 1:2040665/69‑1 (MQ=255) gccgcAGGTTTTGCGCTGACGCTCCTTACGCTGCCGTGGCTGGGGAATCATGGTTTGTGGCTGGCGTTa < 1:2172883/69‑1 (MQ=255) gccgcAGGTTTTGCGCTGACGCTCCTTACGCTGCCGTGGCTGGGGAATCATGGTTTGTGGCTGGCGTTa < 1:71629/69‑1 (MQ=255) gccgcAGGTTTTGCGCTGACGCTCCTTACGCTGCCGTGGCTGGGGAATCATGGTTTGTGGCTGGCGTTa < 1:3221660/69‑1 (MQ=255) gccgcAGGTTTTGCGCTGACGCTCCTTACGCTGCCGTGGCTGGGGAATCATGGTTTGTGGCTGGCGTTa < 1:2386896/69‑1 (MQ=255) gccgcAGGTTTTGCGCTGACGCTCCTTACGCTGCCGTGGCTGGGGAATCATGGTTTGTGGCTGGCGTTa < 1:294026/69‑1 (MQ=255) gccgcAGGTTTTGCGCTGACGCTCCTTACGCTGCAGTGGCTGGGGAATCATGGTTTGTGGCTGGCGTTa < 1:1231328/69‑1 (MQ=255) gcTGACGCTCCTTACGCTGCCGTGGCTGGGGAATCATGGTTTGTGGCTGGCGTTAACCGTCTTTCTgg < 1:3240529/68‑1 (MQ=255) gACGCTCCTTACGCTGCCGTGGCTGGGTAATCATGCTTTGTGGCTGGCATTAACCGTCTTTCTGGCGtt > 1:984234/1‑69 (MQ=255) gACGCTCCTTACGCTGCCGTGGCTGGGTAATCATGCTTTGTGGCTGGCATTAACCGTCTTTCTGGCGtt > 1:3141442/1‑69 (MQ=255) gACGCTCCTTACGCTGCCGTGGCTGGGTAATCATGCTTTGTGGCTGGCATTAACCGTCTTTCTGGCGtt > 1:1276736/1‑69 (MQ=255) cTGCCGTGGCTGGGTAATCATGCTTTGTGGCTGGCATTAACCGTCTTTCTGGCGTTGCGCGGGCTTtc < 1:23604/68‑1 (MQ=255) cTGCCGTGGCTGGGTAATCATGCTTTGTGGCTGGCATTAACCGTCTTTCTGGCGTTGCGCGGGCTTtc < 1:3401221/68‑1 (MQ=255) cTGCCGTGGCTGGGTAATCATGCTTTGTGGCTGGCATTAACCGTCTTTCTGGCGTTGCGCGGGCTTtc < 1:3334847/68‑1 (MQ=255) cTGCCGTGGCTGGGTAATCATGCTTTGTGGCTGGCATTAACCGTCTTTCTGGCGTTGCGCGGGCTTtc > 1:3015923/1‑68 (MQ=255) cTGCCGTGGCTGGGTAATCATGCTTTGTGGCTGGCATTAACCGTCTTTCTGGCGTTGCGCGGGCTTtc < 1:2658139/68‑1 (MQ=255) cTGCCGTGGCTGGGTAATCATGCTTTGTGGCTGGCATTAACCGTCTTTCTGGCGTTGCGCGGGCTTtc < 1:811105/68‑1 (MQ=255) cTGCCGTGGCTGGGTAATCATGCTTTGTGGCTGGCATTAACCGTCTTTCTGGCGTTGCGCGGGCTTtc < 1:2861480/68‑1 (MQ=255) cTGCCGTGGCTGGGTAATCATGCTTTGTGGCTGGCATTAACCGTCTTTCTGGCGTTGCGCGGGCTTtc < 1:1314970/68‑1 (MQ=255) cTGCCGTGGCTGGGTAATCATGCTTTGTGGCTGGCATTAACCGGCTTTCTGGCGTTGCGCGGGCTTtc < 1:3155584/68‑1 (MQ=255) ccGTGGCTGGGTAATCATGCTTTGTGGCTGGCAtt < 1:3129840/35‑1 (MQ=255) gCTGGGGAATCATGGTTTGTGGCTGGCGTTAACCGTCTTTCTGGCGtta < 1:2529834/49‑2 (MQ=255) gCTGGGGAATCATGGTTTGTGGCTGGCGTTAACCGTCTTTCTGGCGtta < 1:1106989/49‑2 (MQ=255) gCTGGGGAATCATGGTTTGTGGCTGGCGTTAACCGTCTTTCTGGCGtta < 1:1175419/49‑2 (MQ=255) gCTGGGGAATCATGGTTTGTGGCTGGCGTTAACCGTCTTTCTGGCGtta < 1:1507590/49‑2 (MQ=255) gCTGGGGAATCATGGTTTGTGGCTGGCGTTAACCGTCTTTCTGGCGtta < 1:2733171/49‑2 (MQ=255) gCTGGGGAATCATGGTTTGTGGCTGGCGTTAACCGTCTTTCTGGCGtta < 1:2078945/49‑2 (MQ=255) gCTGGGGAATCATGGTTTGTGGCTGGCGTTAACCGTCTTTCTGGCGtta < 1:672863/49‑2 (MQ=255) gCTGGGGAATCATGGTTTGTGGCTGGCGTTAACCGTCTTTCTGGCGtta < 1:3247867/49‑2 (MQ=255) gCTGGGGAATCATGGTTTGTGGCTGGCGTTAACCGTCTTTCTGGCGtta < 1:2866591/49‑2 (MQ=255) gCTGGGGAATCATGGTTTGTGGCTGGCGTTAACCGTCTTTCTGGCGtta < 1:2968764/49‑2 (MQ=255) gCTGGGGAATCATGGTTTGTGGCTGGCGTTAACCGTCTTTCTGGCGtta < 1:3357931/49‑2 (MQ=255) gCTGGGGAATCATGGTTTGTGGCTGGCGTTAACCGTCTTTCTGGCGtta < 1:366579/49‑2 (MQ=255) gCTGGGGAATCATGGTTTGTGGCTGGCGTTAACCGTCTTTCTGGCGtta < 1:589346/49‑2 (MQ=255) tGGGTAATCATGCTTTGTGGCTGGCATTAACCGTCTTTCTGGCGTTGCGCGGGCTTTCTCTGGCGGCTa < 1:314127/69‑1 (MQ=255) tGGGTAATCATGCTTTGTGGCTGGCATTAACCGTCTTTCTGGCGTTGCGCGGGCTTTCTCTGGCGGCTa < 1:7999/69‑1 (MQ=255) tGGGTAATCATGCTTTGTGGCTGGCATTAACCGTCTTTCTGGCGTTGCGCGGGCTTTCTCTGGCGGCTa < 1:1248820/69‑1 (MQ=255) tGGGTAATCATGCTTTGTGGCTGGCATTAACCGTCTTTCTGGCGTTGCGCGGGCTTTCTCTGGCGGCTa < 1:2456207/69‑1 (MQ=255) tGGGTAATCATGCTTTGTGGCTGGCATTAACCGTCTTTCTGGCGTTGCGCGGGCTTTCTCTGGCGGCTa < 1:2054693/69‑1 (MQ=255) tGGGTAATCATGCTTTGTGGCTGGCATTAACCGTCTTTCTGGCGTTGCGCGGGCTTTCTCTGGCGGCTa < 1:329540/69‑1 (MQ=255) aaTCATGCTTTGTGGCTGGCATTAACCGTCTTTCTGGCGTTGCGCGGGCTTTCTCTGGCGGCTATCTgg > 1:1249042/1‑69 (MQ=255) aaTCATGCTTTGTGGCTGGCATTAACCGTCTTTCTGGCGTTGCGCGGGCTTTCTCTGGCGGCTATCTgg > 1:2174713/1‑69 (MQ=255) aaTCATGCTTTGTGGCTGGCATTAACCGTCTTTCTGGCGTTGCGCGGGCTTTCTCTGGCGGCTATCTgg > 1:1991644/1‑69 (MQ=255) aaTCATGCTTTGTGGCTGGCATTAACCGTCTTTCTGGCGTTGCGCGGGCTTTCTCTGGCGGCTATCTgg > 1:1550837/1‑69 (MQ=255) aaTCATGCTTTGTGGCTGGCATTAACCGTCTTTCTGGCGTTGCGCGGGCTTTCTCTGGCGGCTATCTg > 1:474547/1‑68 (MQ=255) aaTCATGCTTTGTGGCTGGCATTAACCGTCTTTCTGGCGTTGCG‑GGGCTTTCTCTGGCGGCTATCTgg > 1:3203710/1‑68 (MQ=255) aTCATGGTTTGTGGCTGGCGTTAACCGTCTTTGTGGCGTTACGTGGGCTTTCTCTGGCGGCTATCTggc > 1:2918466/1‑69 (MQ=255) aTCATGGTTTGTGGCTGGCGTTAACCGTCTTTCTgg > 1:2095960/1‑36 (MQ=37) aTCATGGTTTGTGGCTGGCGTTAACCGTCTTTCTGGCGTTACGTGGGCTTTCTCTGGCGGCTATCTggc > 1:3243179/1‑69 (MQ=255) aTCATGGTTTGTGGCTGGCGTTAACCGTCTTTCTGGCGTTACGTGGGCTTTCTCTGGCGGCTATCTggc > 1:82021/1‑69 (MQ=255) aTCATGGTTTGTGGCTGGCGTTAACCGTCTTTCTGGCGTTACGTGGGCTTTCTCTGGCGGCTATCTggc > 1:103969/1‑69 (MQ=255) aTCATGGTTTGTGGCTGGCGTTAACCGTCTTTCTGGCGTTACGTGGGCTTTCTCTGGCGGCTATCTggc > 1:3313232/1‑69 (MQ=255) aTCATGGTTTGTGGCTGGCGTTAACCGTCTTTCTGGCGTTACGTGGGCTTTCTCTGGCGGCTATCTggc > 1:2637548/1‑69 (MQ=255) aTCATGGTTTGTGGCTGGCGTTAACCGTCTTTCTGGCGTTACGTGGGCTTTCTCTGGCGGCTATCTggc > 1:2343921/1‑69 (MQ=255) aTCATGGTTTGTGGCTGGCGTTAACCGTCTTTCTGGCGTTACGTGGGCTTTCTCTGGCGGCTATCTggc > 1:1568149/1‑69 (MQ=255) aTCATGGTTTGTGGCTGGCGTTAACCGTCTTTCTGGCGTTACGTGGGCTTTCTCTGGCGGCTATCTggc > 1:1974469/1‑69 (MQ=255) cATGCTTTGTGGCTGGCATTAACCGTCTTTCTGGCGTTGCGCGGGCTTTCTCTGGCGGCTATCTggcgg > 1:1006000/1‑69 (MQ=255) aTGCTTTGTGGCTGGCATTAACCGTCTTTCTGGCGTTGCGCGGGCTTTCTCTGGCGGCTATCTggcggc > 1:708691/1‑69 (MQ=255) gCTTTGTGGCTGGCATTAACCGTCTTTCTGGCGTTGCGCGGGCTTTCTCTGGCGGCTATCTGGCGGCGt < 1:996034/69‑1 (MQ=255) gCTTTGTGGCTGGCATTAACCGTCTTTCTGGCGGTGCGCGGGCTTTCTCTGGCGGCTa < 1:3379282/58‑1 (MQ=255) cTTTGTGGCTGGCATTAACCGTCTTTCTGGCGTTGCGCGGGCTTTCTCTGGCGGCTATCTGGCGGCGt > 1:327307/1‑68 (MQ=255) cTTTGTGGCTGGCATTAACCGTCTTTCTGGCGTTGCGCGGGCTTTCTCTGGCGGCTATCTGGCGGCGt > 1:96650/1‑68 (MQ=255) cTTTGTGGCTGGCATTAACCGTCTTTCTGGCGTTGCGCGGGCTTTCTCTGGCGGCTATCTGGCGGCGt > 1:1051271/1‑68 (MQ=255) cTTTGTGGCTGGCATTAACCGTCTTTCTGGCGTTGCGCGGGCTTTCTCTGGCGGCTATCTGGCGGCGt > 1:1263433/1‑68 (MQ=255) cTTTGTGGCTGGCATTAACCGTCTTTCTGGCGTTGCGCGGGCTTTCTCTGGCGGCTATCTGGCGGCGt > 1:233503/1‑68 (MQ=255) cTTTGTGGCTGGCATTAACCGTCTTTCTGGCGTTGCGCGGGCTTTCTCTGGCGGCTATCTGGCGGCGt > 1:1440146/1‑68 (MQ=255) cTTTGTGGCTGGCATTAACCGTCTTTCTGGCGTTGCGCGGGCTTTCTCTGGCGGCTATCTGGCGGCGTc < 1:2327227/69‑1 (MQ=255) cATTAACCGTCTTTCTGGCGTTGCGCGGGCTTTCTCTGGCGGCTa < 1:202342/45‑1 (MQ=255) aTTAACCGTCTTTCTGGCGTTGCGCGGGCTTTCTCTGGCGGCTATCTGGCGGCGTCACTGgcgc < 1:1710816/64‑1 (MQ=255) aTTAACCGTCTTTCTGGCGTTGCGCGGGCTTTCTCTGGCGGCTATCTGGCGGCGTCACTGgcgc < 1:1550678/64‑1 (MQ=255) aTTAACCGTCTTTCTGGCGTTGCGCGGGCTTTCTCTGGCGGCTATCTGGCGGCGTCACTGgcgc < 1:1397320/64‑1 (MQ=255) aTTAACCGTCTTTCTGGCGTTGCGCGGGCTTTCTCTGGCGGCTATCTGGCGGCGTCACTGgcgc < 1:1354294/64‑1 (MQ=255) aTTAACCGTCTTTCTGGCGTTGCGCGGGCTTTCTCTGGCGGCTATCTGGCGGCGTCACTGgcgc < 1:688401/64‑1 (MQ=255) aTTAACCGTCTTTCTGGCGTTGCGCGGGCTTTCTCTGGCGGCTATCTGGCGGCGTCACTGgcgc < 1:1756519/64‑1 (MQ=255) aTTAACCGTCTTTCTGGCGTTGCGCGGGCTTTCTCTGGCGGCTATCTGGCGGCGTCACTGgcgc < 1:1936173/64‑1 (MQ=255) aTTAACCGTCTTTCTGGCGTTGCGCGGGCTTTCTCTGGCGGCTATCTGGCGGCGTCACTGgcgc < 1:109644/64‑1 (MQ=255) aTTAACCGTCTTTCTGGCGTTGCGCGGGCTTTCTCTGGCGGCTATCTGGCGGCGTCACTGgcgc < 1:1064653/64‑1 (MQ=255) aTTAACCGTCTTTCTGGCGTTGCGCGGGCTTTCTCTGGCGGCTATCTGGCGGCGTCACTGgcgc < 1:2304465/64‑1 (MQ=255) aTTAACCGTCTTTCTGGCGTTGCGCGGGCTTTCTCTGGCGGCTATCTGGCGGCGTCACTGgcgc < 1:2408074/64‑1 (MQ=255) aTTAACCGTCTTTCTGGCGTTGCGCGGGCTTTCTCTGGCGGCTATCTGGCGGCGTCACTGgcgc < 1:2778642/64‑1 (MQ=255) aTTAACCGTCTTTCTGGCGTTGCGCGGGCTTTCTCTGGCGGCTATCTGGCGGCGTCACTGGCGCAATgg > 1:1643894/1‑69 (MQ=255) aTTAACCGTCTTTCTGGCGTTGCGCGGGCTTTCTCTGGCGGCTATCTGGCGGCGTCACTAGCGCAATgg > 1:1711774/1‑69 (MQ=255) | CGCCGCAGGTTTTGCGCTGACGCTCCTTACGCTGCCGTGGCTGGGTAATCATGCTTTGTGGCTGGCATTAACCGTCTTTCTGGCGTTGCGCGGGCTTTCTCTGGCGGCTATCTGGCGGCGTCACTGGCGCAATGG > minE/2797839‑2797973 |
| Alignment Legend |
|---|
Aligned base mismatch/match (shaded by quality score): ATCG/ATCG < 3 ≤ ATCG/ATCG < 21 ≤ ATCG/ATCG < 32 ≤ ATCG/ATCG < 36 ≤ ATCG/ATCG |
Unaligned base: atcg Masked matching base: atcg Alignment gap: ‑ Deleted base: ‑ |