Predicted mutation | |||||||
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evidence | seq id | position | mutation | freq | annotation | gene | description |
RA | minE | 241,319 | C→T | 78.4% | S968S (TCG→TCA) | sbcC ← | exonuclease, dsDNA, ATP‑dependent |
Read alignment evidence... | |||||||||||
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seq id | position | ref | new | freq | score (cons/poly) | reads | annotation | genes | product | ||
* | minE | 241,319 | 0 | C | T | 78.4% | 58.7 / 10.6 | 46 | S968S (TCG→TCA) | sbcC | exonuclease, dsDNA, ATP‑dependent |
Reads supporting (aligned to +/- strand): ref base C (6/4); new base T (7/29); total (13/33) | |||||||||||
Fisher's exact test for biased strand distribution p-value = 1.97e-02 | |||||||||||
Kolmogorov-Smirnov test that lower quality scores support variant p-value = 9.88e-01 |
CAGCGTGCCAAAACCTTCATCAAGGAACAGCGAGTCAATACGTGTTTTATGGCTGACCAGATCCGAAAGCGCCAGCGCCAGCGCCAGACTAACGAGGAAACTTTCGCCGCCGGAAAGGGTACGGGTATCGCG > minE/241256‑241387 | cAGTGTGCCAAAACCTTCATCAAGGAACAGCGAGTCAATACGCGTTTTATGGCTGACCAGATCTGAAag < 1:3170734/69‑1 (MQ=255) cAGTGTGCCAAAACCTTCATCAAGGAACAGCGAGTCAATACGCGTTTTATGGCTGACCAGATCTGAAag < 1:2674692/69‑1 (MQ=255) cAGTGTGCCAAAACCTTCATCAAGGAACAGCGAGTCAATACGCGTTTTATGGCTGACCAGATCTGAAag < 1:2184802/69‑1 (MQ=255) ccTTCATCAAGGAACAGCGAGTCAATACGCGTTTTATTGCTGACCAGATCTGAAagcgccagtgc < 1:344115/65‑1 (MQ=255) ccTTCATCAAGGAACAGCGAGTCAATACGCGTTTTATGGCTGACCAGTTCTGAAagcgccagtgc < 1:367465/65‑1 (MQ=255) ccTTCATCAAGGAACAGCGAGTCAATACGCGTTTTATGGCTGACCAGATCTGAAagcgccagtgc < 1:2670966/65‑1 (MQ=255) ccTTCATCAAGGAACAGCGAGTCAATACGCGTTTTATGGCTGACCAGATCTGAAagcgccagtgc < 1:959968/65‑1 (MQ=255) ccTTCATCAAGGAACAGCGAGTCAATACGCGTTTTATGGCTGACCAGATCTGAAagcgccagtgc < 1:914926/65‑1 (MQ=255) ccTTCATCAAGGAACAGCGAGTCAATACGCGTTTTATGGCTGACCAGATCTGAAagcgccagtgc < 1:575114/65‑1 (MQ=255) ccTTCATCAAGGAACAGCGAGTCAATACGCGTTTTATGGCTGACCAGATCTGAAagcgccagtgc < 1:541697/65‑1 (MQ=255) ccTTCATCAAGGAACAGCGAGTCAATACGCGTTTTATGGCTGACCAGATCTGAAagcgccagtgc < 1:3119/65‑1 (MQ=255) ccTTCATCAAGGAACAGCGAGTCAATACGCGTTTTATGGCTGACCAGATCTGAAagcgccagtgc < 1:2873036/65‑1 (MQ=255) ccTTCATCAAGGAACAGCGAGTCAATACGCGTTTTATGGCTGACCAGATCTGAAagcgccagtgc < 1:2867860/65‑1 (MQ=255) ccTTCATCAAGGAACAGCGAGTCAATACGCGTTTTATGGCTGACCAGATCTGAAagcgccagtgc < 1:1130134/65‑1 (MQ=255) ccTTCATCAAGGAACAGCGAGTCAATACGCGTTTTATGGCTGACCAGATCTGAAagcgccagtgc < 1:128314/65‑1 (MQ=255) ccTTCATCAAGGAACAGCGAGTCAATACGCGTTTTATGGCTGACCAGATCTGAAagcgccagtgc < 1:1254014/65‑1 (MQ=255) tcaAGGAACAGCGAGTCAATACGTGTTTTATGGCTGACCACATCCGAAAGcgccagcgccagcgccag < 1:1010051/68‑1 (MQ=255) aaGGAACAGCGAGTCAATACGTGTTTTATGGCTGACCAGATCCGAAagcgcc > 1:2178865/1‑52 (MQ=255) aaGGAACAGCGAGTCAATACGTGTTTTATGGCTGACCAGATCCGAAagcgcc > 1:2329744/1‑52 (MQ=255) aaGGAACAGCGAGTCAATACGTGTTTTATGGCTGACCAGATCCGAAagcgc > 1:260596/1‑51 (MQ=255) aaGGAACAGCGAGTCAATACGTGTTTTATGGCTGACCAGATCCGAAAGCGCCAGCGCCAGCGCCAGACt < 1:579790/69‑1 (MQ=255) aaGGAACAGCGAGTCAATACGTGTTTTATGGCTGACCAGATCCGAAAGCGCCAGCGCCAGCGCCAGACt < 1:1523701/69‑1 (MQ=255) gAACAGCGAGTCAATACGTGTTTTATGGCTGCCCAGATCCGAAAGCGCCAGCGCCAGCGCCAGACTa > 1:2581714/1‑67 (MQ=255) aCAGCGAGTCAATACGTGTTTTATGGCTGACCAGATCCGAAAGCGCCAGCGCCAGCGCCAGACt < 1:606175/64‑1 (MQ=255) cGTGTTTTATGGCTGACCAGATCCGAAAGCGCCAGCGCCAGCGCCAGACTAACGAGGAAACTTTcgccg > 1:113528/1‑69 (MQ=255) cGTGTTTTATGGCTGACCAGATCCGAAAGCGCCAGCGCCAGCGCCAGACTAACGAGGAAACTTTcgccg > 1:2837329/1‑69 (MQ=255) aTGGCTGACCAGATCTGAAAGCGCCAGTGCCAGCGCCAGACTGACGAGGAAACTTTCGCCGCCGGaaa < 1:700222/68‑1 (MQ=39) aTGGCTGACCAGATCTGAAAGCGCCAGTGCCAGCGCCAGACTGACGAGGAAACTTTCGCCGCCGGaaa < 1:2057757/68‑1 (MQ=39) aTGGCTGACCAGATCTGAAAGCGCCAGTGCCAGCGCCAGACTGACGAGGAAACTTTCGCCGCCGGaaa < 1:3252170/68‑1 (MQ=39) aTGGCTGACCAGATCTGAAAGCGCCAGTGCCAGCGCCAGACTGACGAGGAAACTTTCGCCGCCGGaaa < 1:1422102/68‑1 (MQ=39) aTGGCTGACCAGATCTGAAAGCGCCAGTGCCAGCGCCAGACTGACGAGGAAACTTTCGCCGCCGGaaa < 1:3077584/68‑1 (MQ=39) aTGGCTGACCAGATCTGAAAGCGCCAGTGCCAGCGCCAGACTGACGAGGAAACTTTCGCCGCCGGaaa < 1:2202276/68‑1 (MQ=39) aTGGCTGACCAGATCTGAAAGCGCCAGTGCCAGCGCCAGACTGACGAGGAAACTTTCGCCGCCGGaaa < 1:1499451/68‑1 (MQ=39) aTGGCTGACCAGATCTGAAAGCGCCAGTGCCAGCGCCAGACTGACGAGGAAACTTTCGCCGCCGGaaa < 1:2254444/68‑1 (MQ=39) aTGGCTGACCAGATCTGAAAGCGCCAGTGCCAGCGCCAGACTGACGAGGAAACTTTCGCCGCCGGaaa < 1:2701259/68‑1 (MQ=39) aTGGCTGACCAGATCTGAAAGCGCCAGTGCCAGCGCCAGACTGACGAGGAAACTTTCGCCGCCGGaaa < 1:243388/68‑1 (MQ=39) aTGGCTGACCAGATCTGAAAGCGCCAGTGCCAGCGCCAGACTGACGAGGAAACTTTCGCCGCCGGaaa < 1:1483184/68‑1 (MQ=39) aTGGCTGACCAGATCTGAAAGCGCCAGTGCCAGCGCCAGACTGACGAGGAAACTTTCGCCGCCGGaaa < 1:2164540/68‑1 (MQ=39) cTGACCAGATCTGAAAGCGCCAGTGCCAGCGCCAGACTGACGAGGAAACTTTCGCCGCCGGaaa < 1:2455489/64‑1 (MQ=38) gACCAGATCTGAAAGCGCCAGTGCCAGCGCCAGACTGACGAGGAAACTTTcgccg > 1:343557/1‑55 (MQ=38) gACCAGATCTGAAAGCGCCAGTGCCAGCGCCAGACTGACGAGGAAACTTTcgccg > 1:1805095/1‑55 (MQ=38) gACCAGATCTGAAAGCGCCAGTGCCAGCGCCAGACTGACGAGGAAACTTTcgccg > 1:603413/1‑55 (MQ=38) gACCAGATCTGAAAGCGCCAGTGCCAGCGCCAGACTGACGAGGAAACTTTcgccg > 1:865774/1‑55 (MQ=38) gACCAGATCTGAAAGCGCCAGTGCCAGCGCCAGACTGACGAGGAAACTTTcgccg > 1:1459480/1‑55 (MQ=38) gACCAGATCTGAAAGCGCCAGTGCCAGCGCCAGACTGACGAGGAAACTTTcgccg > 1:2891849/1‑55 (MQ=38) gACCAGATCTGAAAGCGCCAGTGCCAGCGCCAGACTGACGAGGAAACTTTcgccg > 1:1814076/1‑55 (MQ=38) cGAAAGCGCCAGCGCCAGCGCCAGACTAACGAGGAAACTTTCGCCGCCGGAAAGTGTACGGGTATcgcg < 1:3141985/69‑1 (MQ=255) cGAAAGCGCCAGCGCCAGCGCCAGACTAACGAGGAAACTTTCGCCGCCGGAAAGGGTACGGGTATcgcg < 1:2288762/69‑1 (MQ=255) cGAAAGCGCCAGCGCCAGCGCCAGACTAACGAGGAAACTTTCGCCGCCGGAAAGGGTACGGGTATcgcg < 1:631475/69‑1 (MQ=255) cGAAAGCGCCAGCGCCAGCGCCAGACTAACGAGGAAACTTTCGCCGCCGGAAAGGGTACGGGTATcgcg < 1:1242502/69‑1 (MQ=255) cGAAAGCGCCAGCGCCAGCGCCAGACTAACGAGGAAACTTTCGCCGCCGGAAAGGGTACGGGTATcgcg < 1:2875911/69‑1 (MQ=255) cGAAAGCGCCAGCGCCAGCGCCAGACTAACGAGGAAACTTACGCCGCCGGAAAGGGTACGGGTATcgcg < 1:1182503/69‑1 (MQ=255) | CAGCGTGCCAAAACCTTCATCAAGGAACAGCGAGTCAATACGTGTTTTATGGCTGACCAGATCCGAAAGCGCCAGCGCCAGCGCCAGACTAACGAGGAAACTTTCGCCGCCGGAAAGGGTACGGGTATCGCG > minE/241256‑241387 |
Alignment Legend |
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Aligned base mismatch/match (shaded by quality score): ATCG/ATCG < 3 ≤ ATCG/ATCG < 21 ≤ ATCG/ATCG < 32 ≤ ATCG/ATCG < 36 ≤ ATCG/ATCG |
Unaligned base: atcg Masked matching base: atcg Alignment gap: ‑ Deleted base: ‑ |