| Predicted mutation | |||||||
|---|---|---|---|---|---|---|---|
| evidence | seq id | position | mutation | freq | annotation | gene | description |
| RA | minE | 2,810,979 | C→T | 70.3% | G589G (GGG→GGA) | uvrA ← | ATPase and DNA damage recognition protein of nucleotide excision repair excinuclease UvrABC |
| Read alignment evidence... | |||||||||||
|---|---|---|---|---|---|---|---|---|---|---|---|
| seq id | position | ref | new | freq | score (cons/poly) | reads | annotation | genes | product | ||
| * | minE | 2,810,979 | 0 | C | T | 70.3% | 50.1 / 23.8 | 57 | G589G (GGG→GGA) | uvrA | ATPase and DNA damage recognition protein of nucleotide excision repair excinuclease UvrABC |
| Reads supporting (aligned to +/- strand): ref base C (5/12); new base T (20/20); total (25/32) | |||||||||||
| Fisher's exact test for biased strand distribution p-value = 2.43e-01 | |||||||||||
| Kolmogorov-Smirnov test that lower quality scores support variant p-value = 8.51e-01 | |||||||||||
CTTTTTCCGGATTCGCCGGAACGCGTTTCTTCGGCACTTCAATCTTGCGTTTGCCGCTCATGTACTGCCCGGTCAACGACTCCGGCACCGCCATAATCGCTTCCAGCGGACCTTCTGCGACCACTTC > minE/2810912‑2811038 | cTTTTTCCGGATTCGCCGGAACGCGTTTCTTCGGCACTTCAATCTTGCGTTTGCCGCTCATGTACTGcc > 1:2505904/1‑69 (MQ=255)cTTTTTCCGGATTCGCCGGAACGCGTTTCTTCGGCACTTCAATCTTGCGTTTGCCGCTCATGTACTGcc > 1:3294641/1‑69 (MQ=255)cTTTTTCCGGATTCGCCGGAACGCGTTTCTTCGGCACTTCAATCTTGCGTTTGCCGCTCATGTACTGcc > 1:2936369/1‑69 (MQ=255)cTTTTTCCGGATTCGCCGGAACGCGTTTCTTCGGCACTTCAATCTTGCGTTTGCCGCTCATGTACTGcc > 1:2015231/1‑69 (MQ=255)cTTTTTCCGGATTCGCCGGAACGCGTTTCTTCGGCACTTCAATCTTGCGTTTGCCGCTCATGTACTGcc > 1:517587/1‑69 (MQ=255)cTTTTTCCGGATTCGCCGGAACGCGTTTCTTCGGCACCTCAATCTTGCGTTTGCCGCTCATGTACTGcc > 1:36573/1‑69 (MQ=255) ttttCCGGATTCGCCGGAACGCGTTTCTTCGGCACTTCAATCTTGCGTTTGCCGCTCATGTACTGccc > 1:20837/1‑68 (MQ=255) ttttCCGGATTCGCCGGAACGCGTTTCTTCGGCACTTCAATCTTGCGTTTGCCGCTCATGTACTGCCCg > 1:1669718/1‑69 (MQ=255) ttttCCGGATTCGCCGGAACGCGTTTCTTCGGCACTTCAATCTTGCGTTTGCCGCTCATGTACTGCCCg > 1:3210032/1‑69 (MQ=255) ttttCCAGATTCGCCGGAACGCGTTTCTTCGGCACTTCAATCTTGCGTTTGCCGCTCATGTACTGCCCg > 1:442122/1‑69 (MQ=255) ttCGCCGGAACGCGTTTCTTCGGCACTTCAATCTTGCGTTTGCCGCTCATGTACTGCCCGGTCAACGAc < 1:2222149/69‑1 (MQ=255) ttCGCCGGAACGCGTTTCTTCGGCACTTCAATCTTGCGTTTGCCGCTCATGTACTGCCCGGTCAACGAc < 1:2289775/69‑1 (MQ=255) cGCCGGAACGCGTTTCTTCGGCACTTCAATCTTGCGTTTACCGCTCATGTACTGTCCGGt > 1:1813050/1‑60 (MQ=255) cGCCGGAACGCGTTTCTTCGGCACTTCAATCTTGCGTTTACCGCTCATGTACTGTCCGGTCAACGAc > 1:1866302/1‑67 (MQ=255) cGCCGGAACGCGTTTCTTCGGCACTTCAATCTTGCGTTTACCGCTCATGTACTGTCCGGTCAACGACt > 1:328551/1‑68 (MQ=255) cGCCGGAACGCGTTTCTTCGGCACTTCAATCTTGCGTTTACCGCTCATGTACTGTCCGGTCAACGACt > 1:2490292/1‑68 (MQ=255) cGCCGGAACGCGTTTCTTCGGCACTTCAATCTTGCGTTTACCGCTCATGTACTGTCCGGTCAACGACt > 1:626741/1‑68 (MQ=255) cGCCGGAACGCGTTTCTTCGGCACTTCAATCTTGCGTTTACCGCTCATGTACTGTCCGGTCAACGACt > 1:3211667/1‑68 (MQ=255) cGCCGGAACGCGTTTCTTCGGCACTTCAATCTTGCGTTTACCGCTCATGTACTGTCCGGTCAACGACt > 1:2633303/1‑68 (MQ=255) cGCCGGAACGCGTTTCTTCGGCACTTCAATCTTGCGTTTACCGCTCATGTACTGTCCGGTCAACGACt > 1:2745165/1‑68 (MQ=255) cGCCGGAACGCGTTTCTTCGGCACTTCAATCTTGCGTTTACCGCTCATGTACTGTCCGGTCAACGACt > 1:3187332/1‑68 (MQ=255) cGCCGGAACGCGTTTCTTCGGCACTTCAATCTTGCGTTTACCGCTCATGTACTGTCCGGTCAACGACt > 1:3014532/1‑68 (MQ=255) cGCCGGAACGCGTTTCTTCGGCACTTCAATCTTGCGTTTACCGCTCATGTACTGTCCGGTCAACGACt > 1:3023610/1‑68 (MQ=255) cGCCGGAACGCGTTTCTTCGGCACTTCAATCTTGCGTTTACCGCTCATGTACTGTCCGGTCAACGACt > 1:309366/1‑68 (MQ=255) cGCCGGAACGCGTTTCTTCGGCACTTCAATCTTGCGTTTACCGCTCATGTACTGTCCGGTCAACGACt > 1:2348782/1‑68 (MQ=255) cGCCGGAACGCGTTTCTTCGGCACTTCAATCTTGCGTTTACCGCTCATGTACTGTCCGGTCAACGACt > 1:2334716/1‑68 (MQ=255) cGCCGGAACGCGTTTCTTCGGCACTTCAATCTTGCGTTTACCGCTCATGTACTGTCCGGTCAACGACt > 1:2153196/1‑68 (MQ=255) cGCCGGAACGCGTTTCTTCGGCACTTCAATCTTGCGTTTACCGCTCATGTACTGTCCGGTCAACGACt > 1:1837961/1‑68 (MQ=255) cGCCGGAACGCGTTTCTTCGGCACTTCAATCTTGCGTTTACCGCTCATGTACTGTCCGGTCAACGACt > 1:170079/1‑68 (MQ=255) cGCCGGAACGCGTTTCTTCGGCACTTCAATCTTGCGTTTACCGCTCATGTACTGTCCGGTCAACGACt > 1:1618300/1‑68 (MQ=255) cGCCGGAACGCGTTTCTTCGGCACTTCAATCTTGCGTTTACCGCTCATGTACTGTCCGGTCAACGACt > 1:626395/1‑68 (MQ=255) cGCCGGAACGCGTTTCTTCGGCACTTCAATCTTGCGTTTACCGCTCATGTACTGTCCGGTCAACGACt > 1:935953/1‑68 (MQ=255) ttcttcGGCACTTCAATCTTGCGTTTACCGCTCATGTACTGTCCGGTCAACGACTCCGGCAcc < 1:3289077/63‑1 (MQ=255) ttcttcGGCACTTCAATCTTGCGTTTACCGCTCATGTACTGTCCGGTCAACGACTCCGGCAcc < 1:344988/63‑1 (MQ=255) ttcttcGGCACTTCAATCTTGCGTTTACCGCTCATGTACTGTCCGGTCAACGACTCCGGCAcc < 1:595102/63‑1 (MQ=255) ttcttcGGCACTTCAATCTTGCGTTTACCGCTCATGTACTGTCCGGTCAACGACTCCGGCAcc < 1:596259/63‑1 (MQ=255) ttcttcGGCACTTCAATCTTGCGTTTACCGCTCATGTACTGTCCGGTCAACGACTCCGGCAcc < 1:3158556/63‑1 (MQ=255) ttcttcGGCACTTCAATCTTGCGTTTACCGCTCATGTACTGTCCGGTCAACGACTCCGGCAcc < 1:639900/63‑1 (MQ=255) ttcttcGGCACTTCAATCTTGCGTTTACCGCTCATGTACTGTCCGGTCAACGACTCCGGCAcc < 1:2926608/63‑1 (MQ=255) ttcttcGGCACTTCAATCTTGCGTTTACCGCTCATGTACTGTCCGGTCAACGACTCCGGCAcc < 1:2699019/63‑1 (MQ=255) ttcttcGGCACTTCAATCTTGCGTTTACCGCTCATGTACTGTCCGGTCAACGACTCCGGCAcc < 1:1872706/63‑1 (MQ=255) ttcttcGGCACTTCAATCTTGCGTTTACCGCTCATGTACTGTCCGGTCAACGACTCCGGCAcc < 1:2044899/63‑1 (MQ=255) ttcttcGGCACTTCAATCTTGCGTTTACCGCTCATGTACTGTCCGGTCAACGACTCCGGCAcc < 1:3140062/63‑1 (MQ=255) tcttcGGCACTTCAATCTTGCGTTTACCGCTCATGTACTGTCCGGTCAACGACTCCGGCAcc < 1:1278469/62‑1 (MQ=255) tcttcGGCACTTCAATCTTGCGTTTACCGCTCATGTACTGTCCGGTCAACGACTCCGGCAcc < 1:900880/62‑1 (MQ=255) tcttcGGCACTTCAATCTTGCGTTTACCGCTCATGTACTGTCCGGTCAACGACTCCGGCAcc < 1:927466/62‑1 (MQ=255) tCAATCTTGCGTTTGCCGCTCATGTACTGCCCGGTCAACGACTCCgg < 1:2086104/47‑1 (MQ=255) tCAATCTTGCGTTGGCCGCTCATGTACTGCCCGGTCAACGACTCCgg < 1:3306774/47‑1 (MQ=255) aTCTTGCGTTTGCCGCTCATGTACTGCCCGGTCAACGACTCCGGCACCGCCATAATCGCTTCCAGCgg < 1:3354421/68‑1 (MQ=255) cTTGCGTTTGCCGCTCATGTACTGCCCGGTCAACGACTc > 1:814356/1‑39 (MQ=255) cTTGCGTTTGCCGCTCATGTACTGCCCGGTCAACGACTCCGGCACCGCCATAATCGCTTCCAGCGGAc > 1:1936213/1‑68 (MQ=255) tttGCCGCTCATGTACTGCCCGGTCAACGACTCCGGCACCGCCATAATCGCTTCCAGCGGACCTTCTGc < 1:2576438/69‑1 (MQ=255) ccGCTCATGTACTGCCCGGTCAACGACTCCGGCACCGCCATAATCGCTTCCAGCGGACCTTCTGCGAc < 1:3327521/68‑1 (MQ=255) gCTCATGTACTGCCCGGTCAACGACTCCGGCACCGCCATAATCGCTTCCAGCGGACCTTCTGCGACCAc < 1:1092708/69‑1 (MQ=255) cTCATGTACTGCCCGGTCAACGACTCCGGCACCGCCATAATCGCTTCCAGCgg < 1:2504129/53‑1 (MQ=255) tCATGTACTGCCCGGTCAACGACTCCGGCACCGCCATAATCGCTTCCAGCGGACCTTCTGCGACCACtt < 1:2318147/69‑1 (MQ=255) tCATGTACTGCCCGGTCAACGACTCCGGCACCGCCATAATCGCTTCCAGCGGACCTTCTGCGACCACtt < 1:3287930/69‑1 (MQ=255) cATGTACTGTCCGGTCAACGACTCCGGCACCGGCATAATTGCTTCCAGTGGACCTTCCGCGACCACTTc < 1:6413/69‑1 (MQ=255) cATGTACTGTCCGGTCAACGACTCCGGCACCGCCATAATTGCTTCCAGTGGACCTTCCGCGACCACTTc < 1:113150/69‑1 (MQ=255) cATGTACTGTCCGGTCAACGACTCCGGCACCGCCATAATTGCTTCCAGTGGACCTTCCGCGACCACTTc < 1:2548668/69‑1 (MQ=255) cATGTACTGTCCGGTCAACGACTCCGGCACCGCCATAATTGCTTCCAGTGGACCTTCCGCGACCACTTc < 1:2266888/69‑1 (MQ=255) cATGTACTGTCCGGTCAACGACTCCGGCACCGCCATAATTGCTTCCAGTGGACCTTCCGCGACCACTTc < 1:2265202/69‑1 (MQ=255) cATGTACTGTCCGGTCAACGACTCCGGCACCGCCATAATTGCTTCCAGTGGACCTTCCGCGACCACTTc < 1:1179268/69‑1 (MQ=255) cATGTACTGCCCGGTCAACGACTCCGGCACCGCCATAATCGCTTCCAGCGGACCTTCTGCGACCACtt < 1:283982/68‑1 (MQ=255) | CTTTTTCCGGATTCGCCGGAACGCGTTTCTTCGGCACTTCAATCTTGCGTTTGCCGCTCATGTACTGCCCGGTCAACGACTCCGGCACCGCCATAATCGCTTCCAGCGGACCTTCTGCGACCACTTC > minE/2810912‑2811038 |
| Alignment Legend |
|---|
Aligned base mismatch/match (shaded by quality score): ATCG/ATCG < 3 ≤ ATCG/ATCG < 21 ≤ ATCG/ATCG < 32 ≤ ATCG/ATCG < 36 ≤ ATCG/ATCG |
Unaligned base: atcg Masked matching base: atcg Alignment gap: ‑ Deleted base: ‑ |