| Predicted mutation | |||||||
|---|---|---|---|---|---|---|---|
| evidence | seq id | position | mutation | freq | annotation | gene | description |
| RA | minE | 2,811,009 | C→T | 31.8% | A579A (GCG→GCA) | uvrA ← | ATPase and DNA damage recognition protein of nucleotide excision repair excinuclease UvrABC |
| Read alignment evidence... | |||||||||||
|---|---|---|---|---|---|---|---|---|---|---|---|
| seq id | position | ref | new | freq | score (cons/poly) | reads | annotation | genes | product | ||
| * | minE | 2,811,009 | 0 | C | T | 31.8% | 39.3 / 19.8 | 47 | A579A (GCG→GCA) | uvrA | ATPase and DNA damage recognition protein of nucleotide excision repair excinuclease UvrABC |
| Reads supporting (aligned to +/- strand): ref base C (5/27); new base T (8/7); total (13/34) | |||||||||||
| Fisher's exact test for biased strand distribution p-value = 1.31e-02 | |||||||||||
| Kolmogorov-Smirnov test that lower quality scores support variant p-value = 1.00e+00 | |||||||||||
ATCTTGCGTTTGCCGCTCATGTACTGCCCGGTCAACGACTCCGGCACCGCCATAATCGCTTCCAGCGGACCTTCTGCGACCACTTCACCGCCGTGAACACCTGCGCCCGGGCCAATGTCGATCAC > minE/2810953‑2811077 | aTCTTGCGTTTGCCGCTCATGTACTGCCCGGTCAACGACTCCGGCACCGCCATAATCGCTTCCAGCgg < 1:3354421/68‑1 (MQ=255) cTTGCGTTTGCCGCTCATGTACTGCCCGGTCAACGACTCCGGCACCGCCATAATCGCTTCCAGCGGAc > 1:1936213/1‑68 (MQ=255) tttGCCGCTCATGTACTGCCCGGTCAACGACTCCGGCACCGCCATAATCGCTTCCAGCGGACCTTCTGc < 1:2576438/69‑1 (MQ=255) ccGCTCATGTACTGCCCGGTCAACGACTCCGGCACCGCCATAATCGCTTCCAGCGGACCTTCTGCGAc < 1:3327521/68‑1 (MQ=255) gCTCATGTACTGCCCGGTCAACGACTCCGGCACCGCCATAATCGCTTCCAGCGGACCTTCTGCGACCAc < 1:1092708/69‑1 (MQ=255) cTCATGTACTGCCCGGTCAACGACTCCGGCACCGCCATAATCGCTTCCAGCgg < 1:2504129/53‑1 (MQ=255) tCATGTACTGCCCGGTCAACGACTCCGGCACCGCCATAATCGCTTCCAGCGGACCTTCTGCGACCACtt < 1:3287930/69‑1 (MQ=255) tCATGTACTGCCCGGTCAACGACTCCGGCACCGCCATAATCGCTTCCAGCGGACCTTCTGCGACCACtt < 1:2318147/69‑1 (MQ=255) cATGTACTGTCCGGTCAACGACTCCGGCACCGGCATAATTGCTTCCAGTGGACCTTCCGCGACCACTTc < 1:6413/69‑1 (MQ=255) cATGTACTGTCCGGTCAACGACTCCGGCACCGCCATAATTGCTTCCAGTGGACCTTCCGCGACCACTTc < 1:113150/69‑1 (MQ=255) cATGTACTGTCCGGTCAACGACTCCGGCACCGCCATAATTGCTTCCAGTGGACCTTCCGCGACCACTTc < 1:2548668/69‑1 (MQ=255) cATGTACTGTCCGGTCAACGACTCCGGCACCGCCATAATTGCTTCCAGTGGACCTTCCGCGACCACTTc < 1:1179268/69‑1 (MQ=255) cATGTACTGTCCGGTCAACGACTCCGGCACCGCCATAATTGCTTCCAGTGGACCTTCCGCGACCACTTc < 1:2266888/69‑1 (MQ=255) cATGTACTGTCCGGTCAACGACTCCGGCACCGCCATAATTGCTTCCAGTGGACCTTCCGCGACCACTTc < 1:2265202/69‑1 (MQ=255) cATGTACTGCCCGGTCAACGACTCCGGCACCGCCATAATCGCTTCCAGCGGACCTTCTGCGACCACtt < 1:283982/68‑1 (MQ=255) ccGGTCAACGACTCCGGCACCGCCATAATCGCTTCCAGCGGACCTTCTGc < 1:3041261/50‑1 (MQ=255) cgttCAACGACTCCGGCACCGCCATAATCGCTTCCAGCGGACCTTCTGCGACCACTTCACCGCCGTg < 1:1213546/64‑1 (MQ=255) cGGTCAACGACTCCGGCACCGCCATAATCGCTTCCAGCGGACCTTCTGCGACCACTTCACCGCCGTg < 1:2680108/67‑1 (MQ=255) cGGTCAACGACTCCGGCACCGCCATAATCGCTTCCAGCGGACCTTCTGCGACCACTTCACCGCCGTg < 1:1175498/67‑1 (MQ=255) cGGTCAACGACTCCGGCACCGCCATAATCGCTTCCAGCGGACCTTCTGCGACCACTTCACCGCCGTg < 1:1911007/67‑1 (MQ=255) cGGTCAACGACTCCGGCACCGCCATAATCGCTTCCAGCGGACCTTCTGCGACCACTTCACCGCCGTg < 1:1579193/67‑1 (MQ=255) cGGTCAACGACTCCGGCACCGCCATAATCGCTTCCAGCGGACCTTCTGCGACCACTTCACCGCCGTg < 1:445040/67‑1 (MQ=255) cGGTCAACGACTCCGGCACCGCCATAATCGCTTCCAGCGGACCTTCTGCGACCACTTCACCGCCGTg < 1:371973/67‑1 (MQ=255) cGGTCAACGACTCCGGCACCGCCATAATCGCTTCCAGCGGACCTTCTGCGACCACTTCACCGCCGTg < 1:1242613/67‑1 (MQ=255) cGGTCAACGACTCCGGCACCGCCATAATCGCTTCCAGCGGACCTTCTGCGACCACTTCACCGCCGTg < 1:3176029/67‑1 (MQ=255) cGGTCAACGACTCCGGCACCGCCATAATCGCTTCCAGCGGACCTTCTGCGACCACTTCACCGCCGTg < 1:3408890/67‑1 (MQ=255) cAACGACTCCGGCACCGCCATAATTGCTTCCAGTGGACCTTCCGCGACCACTTCACCGCCGTGAacac > 1:1237747/1‑68 (MQ=255) cAACGACTCCGGCACCGCCATAATTGCTTCCAGTGGACCTTCCGCGACCACTTCACCGCCGTGAACAcc > 1:1775243/1‑69 (MQ=255) cAACGACTCCGGCACCGCCATAATTGCTTCCAGTGGACCTTCCGCGACCACTTCACCGCCGTGAACAcc > 1:833300/1‑69 (MQ=255) cAACGACTCCGGCACCGCCATAATTGCTTCCAGTGGACCTTCCGCGACCACTTCACCGCCGTGAACAcc > 1:2518271/1‑69 (MQ=255) cAACGACTCCGGCACCGCCATAATTGCTTCCAGTGGACCTTCCGCGACCACTTCACCGCCGTGAACAcc > 1:2170489/1‑69 (MQ=255) cAACGACTCCGGCACCGCCATAATTGCTTCCAGTGGACCTTCCGCGACCACTTCACCGCCGTGAACAcc > 1:610811/1‑69 (MQ=255) cAACGACTCCGGCACCGCCATAATTGCTTCCAGTGGACCTTCCGCGACCACTTCACCGCCGTGAACAcc > 1:1830465/1‑69 (MQ=255) cAACGACTCCGGCACCGCCATAATTGCTCCCAGTGGACCTTCCGCGACCACTTCACCGCCGTGAACAcc > 1:2855219/1‑69 (MQ=255) cAACGACTCCGGCACCGCCATAATCGCTTCCAGCGGACCTTCTGCGACCAc < 1:1054167/51‑1 (MQ=255) gACTCCGGCACCGCCATAATTGCTTCCAGTGGACCTTCCGCGACCACTTc < 1:626308/50‑1 (MQ=255) gACTCCGGCACCGCCATAATCGCTTCCAGCGGACCTTCTGCGACCACTTCACCGCCGTGAACACCTgcg > 1:2133438/1‑69 (MQ=255) gACTCCGGCACCGCCATAATCGCTTCCAGCGGACCTTCTGCGACCACTTCACCGCCGTGAACACCTgcg > 1:1224031/1‑69 (MQ=255) gACTCCGGCACCGCCATAATCGCTTCCAGCGGACCTTCTGCGACCACTTCACCGCCGTGAACACCTgcg > 1:1129511/1‑69 (MQ=255) gACTCCGGCACCGCCATAATCGCTTCCAGCGGACCTTCTGCGACCACTTCACCGCCGTGAACACCTgcg > 1:1055770/1‑69 (MQ=255) cACCGCCATAATCGCTTCCAGCGGACCTTCTGCGACCACTTCACCGCCGTGAACACCTGCGCCCGGGcc < 1:2824844/69‑1 (MQ=255) cACCGCCATAATCGCTTCCAGCGGACCTTCTGCGACCACTTCACCGCCGTGAACACCTGCGCCCGGGcc < 1:2561721/69‑1 (MQ=255) cACCGCCATAATCGCTTCCAGCGGACCTTCTGCGACCACTTCACCGCCGTGAACACCTGCGCCCGGGcc < 1:3350900/69‑1 (MQ=255) aTCGCTTCCAGCGGACCTTCTGCGACCACTTCAccgc < 1:978447/37‑1 (MQ=255) aTCGCTTCCAGCGGACCTTCTGCGACCACTTCAccgc < 1:2412864/37‑1 (MQ=255) aTCGCTTCCAGCGGACCTTCTGCGACCACTTCAccgc < 1:2171759/37‑1 (MQ=255) aTCGCTTCCAGCGGACCTTCTGCGACCACTTCAccgc < 1:1066778/37‑1 (MQ=255) cGCTTCCAGCGGACCTTCTGCGACCACTTCACCGCCGTGAACACCTGCGCCCGGGCCAATGTCGATcac > 1:3249791/1‑69 (MQ=255) cGCTTCCAGCGGACCTTCTGCGACCACTTCACCGCCGTGAACACCTGCGCCCGGGCCAATGTCGATcac > 1:2775427/1‑69 (MQ=255) cGCTTCCAGCGGACCTTCTGCGACCACTTCACCGCCGTGAACACCTGCGCCCGGGCCAATGTCGATcac > 1:3381611/1‑69 (MQ=255) cGCTTCCAGCGGACCTTCTGCGACCACTTCACCGCCGTGAACACCTGCGCCCGGGCCAATGTCGATcac > 1:359974/1‑69 (MQ=255) cGCTTCCAGCGGACCTTCTGCGACCACTTCACCGCCGTGAACACCTGCGCCCGGGCCAATGTCGATcac > 1:2040968/1‑69 (MQ=255) cGCTTCCAGCGGACCTTCTGCGACCACTTCACCGCCGTGAACACCTGCGCCCGGGCCAATGTCGATcac > 1:598942/1‑69 (MQ=255) cGCTTCCAGCGGACCTTCTGCGACCACTTCACCGCCGTGAACACCTGCGCCCGGGCCAATGTCGATcac > 1:1848275/1‑69 (MQ=255) cGCTTCCAGCGGACCTTCTGCGACCACTTCACCGCCGTGAACACCTGCGCCCGGGCCAATGTCGATcac > 1:1645318/1‑69 (MQ=255) cGCTTCCAGCGGACCTTCTGCGACCACTTCACCGCCGTGAACACCTGCGCCCGGGCCAATGTCGATcac > 1:1335812/1‑69 (MQ=255) cGCTTCCAGCGGACCTTCTGCGACCACTTCACCGCCGTGAACACCTGCGCCCGGGCCAATGTCGATca > 1:1178604/1‑68 (MQ=255) | ATCTTGCGTTTGCCGCTCATGTACTGCCCGGTCAACGACTCCGGCACCGCCATAATCGCTTCCAGCGGACCTTCTGCGACCACTTCACCGCCGTGAACACCTGCGCCCGGGCCAATGTCGATCAC > minE/2810953‑2811077 |
| Alignment Legend |
|---|
Aligned base mismatch/match (shaded by quality score): ATCG/ATCG < 3 ≤ ATCG/ATCG < 14 ≤ ATCG/ATCG < 32 ≤ ATCG/ATCG < 36 ≤ ATCG/ATCG |
Unaligned base: atcg Masked matching base: atcg Alignment gap: ‑ Deleted base: ‑ |