| Predicted mutation | |||||||
|---|---|---|---|---|---|---|---|
| evidence | seq id | position | mutation | freq | annotation | gene | description |
| RA | minE | 2,811,609 | A→G | 43.1% | H379H (CAT→CAC) | uvrA ← | ATPase and DNA damage recognition protein of nucleotide excision repair excinuclease UvrABC |
| Read alignment evidence... | |||||||||||
|---|---|---|---|---|---|---|---|---|---|---|---|
| seq id | position | ref | new | freq | score (cons/poly) | reads | annotation | genes | product | ||
| * | minE | 2,811,609 | 0 | A | G | 43.1% | 12.0 / 43.4 | 58 | H379H (CAT→CAC) | uvrA | ATPase and DNA damage recognition protein of nucleotide excision repair excinuclease UvrABC |
| Reads supporting (aligned to +/- strand): ref base A (19/14); new base G (14/11); total (33/25) | |||||||||||
| Fisher's exact test for biased strand distribution p-value = 1.00e+00 | |||||||||||
| Kolmogorov-Smirnov test that lower quality scores support variant p-value = 1.00e+00 | |||||||||||
TGATAAACTTGGCTAATTCTTCGCGTACCGCGCTGGATTCCGTCTCTTTATAGCGGCGCTCCATATTATGCAGCACGCCTTCGAACGGATGACGACGAATGGAGGTATCGCCACGATCGTTCATGTATTTGAATTC > minE/2811542‑2811677 | tGATAAACTTGGCTAATTCTTCGCGTACCGCGCTGGATTCCGTCTCTTTATAGCGGCGCTCCAtatta > 1:1120772/1‑68 (MQ=255)tGATAAACTTGGCTAATTCTTCGCGTACCGCGCTGGATTCCGTCTCTTTATAGCGGCGCTCCAtatta < 1:766151/68‑1 (MQ=255) tAAACTTGGCTAATTCTTCGCGTACCGCGCTGGATTCCGTCTCTTTATAGCGGCGCTCCATATTATgc > 1:2775006/1‑68 (MQ=255) tAAACTTGGCTAATTCTTCGCGTACCGCGCTGGATTCCGTCTCTTTATAGCGGCGCTCCATATTATgc > 1:1757157/1‑68 (MQ=255) cTAATTCTTCGCGTACCGCGCTGGATTCCGTCTCTTTATAGCGGCGCTCCATATTATGCAGCACGCCt < 1:2928990/68‑1 (MQ=255) cTAATTCTTCGCGTACCGCGCTGGATTCCGTCTCTTTATAGCGGCGCTCCATATTATGCAGCACGCCt < 1:2502816/68‑1 (MQ=255) cTAATTCTTCGCGTACCGCGCTGGATTCCGTCTCTTTATAGCGGCGCTCCATATTATGCAGCACGCCt < 1:1041072/68‑1 (MQ=255) cTAATTCTTCGCGTACCGCGCTGGATTCCGTCTCTTTATAGCGGCGCTCCATATTATGCAGCACGCCt < 1:3047428/68‑1 (MQ=255) cTAATTCTTCGCGTACCGCGCTGGATTCCGTCTCTTTATAGCGGCGCTCCATATTATGCAGCACGCCt < 1:320834/68‑1 (MQ=255) cTAATTCTTCGCGTACCGCGCTGGATTCCGTCTCTTTATAGCGGCGCTCCATATTATGCAGCACGCCt < 1:115925/68‑1 (MQ=255) cTAATTCTTCGCGTACCGCGCTGGATTCCGTCTCTTTATAGCGGCGCTCCATATTATGCAGCACGCCt < 1:1326607/68‑1 (MQ=255) gcgcTGGATTCCGTCTCTTTATAGCGGCGCTCCATATTATGCAGCACGCCTTCGAACGGATGacgacg < 1:2371332/68‑1 (MQ=255) gcgcTGGATTCCATCTCTTTATAGCGGCGCTCCATATTATGCAGCACGCCTTCGAACGGATGacgacg < 1:2767532/68‑1 (MQ=255) gATTCCGTCTCTTTATAGCGGCGCTCCATATTATGCAGCACGCCt < 1:2498738/45‑1 (MQ=255) ttCCGTCTCTTTATAGCGGCGCTCCATATTATGCAGCACGCCTTCGAACGGATGACGACGAATGGAgg < 1:778445/68‑1 (MQ=255) ttCCGTCTCTTTATAGCGGCGCTCCATATTATGCAGCACGCCTTCGAACGGATGACGACGAATGGAgg > 1:1776710/1‑68 (MQ=255) ttCCGTCTCTTTATAGCGGCGCTCCATATTATGCAGCACGCCTTCGAACGGATGACGACGAATGGAGGt > 1:423855/1‑69 (MQ=255) ttCCGTCTCTTTATAGCGGCGCTCCATATTATGCAGCACGCCTTCGAACGGATGACGACGAATGGAGGt > 1:554396/1‑69 (MQ=255) ccGTCTCTTTATAACGGCGCTCCATATTGTGCAGCACGCCTTCGAACGGATGACGACGAATGGAGGTAt < 1:2764151/69‑1 (MQ=255) ccGTCTCTTTATAACGGCGCTCCATATTGTGCAGCACGCCTTCGAACGGATGACGACGAATGGAGGTAt < 1:2785796/69‑1 (MQ=255) ccGTCTCTTTATAACGGCGCTCCATATTGTGCAGCACGCCTTCGAACGGATGACGACGAATGGAGGTAt < 1:87461/69‑1 (MQ=255) ccGTCTCTTTATAACGGCGCTCCATATTGTGCAGCACGCCTTCGAACGGATGACGACGAATGGAGGTAt < 1:2739021/69‑1 (MQ=255) ccGTCTCTTTATAACGGCGCTCCATATTGTGCAGCACGCCTTCGAACGGATGACGACGAATGGAGGTAt < 1:2606777/69‑1 (MQ=255) ccGTCTCTTTATAACGGCGCTCCATATTGTGCAGCACGCCTTCGAACGGATGACGACGAATGGAGGTAt < 1:2567996/69‑1 (MQ=255) ccGTCTCTTTATAACGGCGCTCCATATTGTGCAGCACGCCTTCGAACGGATGACGACGAATGGAGGTAt < 1:3189333/69‑1 (MQ=255) ccGTCTCTTTATAACGGCGCTCCATATTGTGCAGCACGCCTTCGAACGGATGACGACGAATGGAGGTAt < 1:498283/69‑1 (MQ=255) ccGTCTCTTTATAACGGCGCTCCATATTGTGCAGCACGCCTTCGAACGGATGACGACGAATGGAGGTAt < 1:2418045/69‑1 (MQ=255) ccGTCTCTTTATAACGGCGCTCCATATTGTGCAGCACGCCTTCGAACGGATGACGACGAATGGAGGTAt < 1:3330843/69‑1 (MQ=255) cGTCTCTTTATAACGGCGCTCCATATTGTGCAGCACGCCTTCGAACGGATGACGACGAATGGAGGTAt > 1:3237771/1‑68 (MQ=255) cGTCTCTTTATAACGGCGCTCCATATTGTGCAGCACGCCTTCGAACGGATGACGACGAATGGAGGTATc > 1:734767/1‑69 (MQ=255) cGTCTCTTTATAACGGCGCTCCATATTGTGCAGCACGCCTTCGAACGGATGACGACGAATGGAGGTATc > 1:454597/1‑69 (MQ=255) cGTCTCTTTATAACGGCGCTCCATATTGTGCAGCACGCCTTCGAACGGATGACGACGAATGGAGGTATc > 1:487589/1‑69 (MQ=255) cGTCTCTTTATAACGGCGCTCCATATTGTGCAGCACGCCTTCGAACGGATGACGACGAATGGAGGTATc > 1:1680359/1‑69 (MQ=255) cGTCTCTTTATAACGGCGCTCCATATTGTGCAGCACGCCTTCGAACGGATGACGACGAATGGAGGTATc > 1:1481900/1‑69 (MQ=255) cGTCTCTTTATAACGGCGCTCCATATTGTGCAGCACGCCTTCGAACGGATGACGACGAATGGAGGTATc > 1:2913689/1‑69 (MQ=255) cGTCTCTTTATAACGGCGCTCCATATTGTGCAGCACGCCTTCGAACGGATGACGACGAATGGAGGTATc > 1:2788922/1‑69 (MQ=255) cGTCTCTTTATAACGGCGCTCCATATTGTGCAGCACGCCTTCGAACGGATGACGACGAATGGAGGTATc > 1:1914988/1‑69 (MQ=255) cGTCTCTTTATAACGGCGCTCCATATTGTGCAGCACGCCTTCGAACGGATGACGACGAATGGAGGTATc > 1:2768214/1‑69 (MQ=255) cGTCTCTTTATAACGGCGCTCCATATTGTGCAGCACGCCTTCGAACGGATGACGACGAATGGAGGTATc > 1:842424/1‑69 (MQ=255) cGTCTCTTTATAACGGCGCTCCATATTGTGCAGCACGCCTTCGAACGGATGACGACGAATGGAGGTATc > 1:210686/1‑69 (MQ=255) cGTCTCTTTATAACGGCGCTCCATATTGTGCAGCACGCCTTCGAACGGATGACGACGAATGGAGGTATc > 1:2460450/1‑69 (MQ=255) cGTCTCTTTATAACGGCGCTCCATATTGTGCAGCACGCCTTCGAACGGATGACGACGAATGGAGGTATc > 1:610443/1‑69 (MQ=255) gTCTCTTTATAGCGGCGCTCCATATTATGCAGCACGCCTTCGAACGGATGACGACGAATGGAGGTATc > 1:1454459/1‑68 (MQ=255) gTCTCTTTATAGCGGCGCTCCATATTATGCAGCACGCCTTCGAACGGATGACGACGAATGGAGGTATc > 1:3341511/1‑68 (MQ=255) gTCTCTTTATAGCGGCGCTCCATATTATGCAGCACGCCTTCGAACGGATGACGACGAATGGAGGTATc > 1:2462184/1‑68 (MQ=255) gTCTCTTTATAGCGGCGCTCCATATTATGCAGCACGCCTTCGAACGGATGACGACGAATGGAGGTATc > 1:1316166/1‑68 (MQ=255) gTCTCTTTATAGCGGCGCTCCATATTATGCAGCACGCCTTCGAACGGATGACGACGAATGGAGGTATc > 1:3046514/1‑68 (MQ=255) gTCTCTTTATAGCGGCGCTCCATATTATGCAGCACGCCTTCGAACGGATGACGACGAATGGAGGTATc > 1:615135/1‑68 (MQ=255) gTCTCTTTATAGCGGCGCTCCATATTATGCAGCACGCCTTCGAACGGATGACGACGAATGGAGGTATc > 1:836754/1‑68 (MQ=255) gTCTCTTTATAGCGGCGCTCCATATTATGCAGCACGCCTTCGAACGGATGACGACGAATGGAGGTATc > 1:2519227/1‑68 (MQ=255) aacggcgCTCCATATTGTGCAGCACGCCTTCGAACGGATGACGACGAATGGAGGTAt < 1:3073739/55‑1 (MQ=255) gcggcgCTCCATATTATGCAGCACGCCTTCGAACGGATGACGACGAATGGAGGTATCGCCACGATCGtt > 1:799291/1‑69 (MQ=255) gcggcgCTCCATATTATGCAGCACGCCTTCGAACGGATGACGACGAATGGAGGTATCGCCACGATCGtt > 1:2930813/1‑69 (MQ=255) gcggcgCTCCATATTATGCAGCACGCCTTCGAACGGATGACGACGAATGGAGGTATCGCCACGATCGtt > 1:2862130/1‑69 (MQ=255) gcggcgCTCCATATTATGCAGCACGCCTTCGAACGGATGACGACGAATGGAGGTATCGCCACGATCGtt < 1:3094997/69‑1 (MQ=255) gcggcgCTCCATATTATGCAGCACGCCTTCGAACGGATGACGACGAATGGAGGTATCGCCACGATCGtt > 1:1712104/1‑69 (MQ=255) gcggcgCTCCATATTATGCAGCACGCCTTCGAACGGATGACGACGAATGGAGGTATCGCCACGATCGtt < 1:1784853/69‑1 (MQ=255) gcggcgCTCCATATTATGCAGCACGCCTTCGAACGGATGACGACGAATGGAGGTATCGCCACGATCGtt < 1:1619544/69‑1 (MQ=255) gcggcgCTCCATATTATGCAGCACGCCTTCGAACGGATGACGACGAATGGAGGTATCGCCACGATCGtt > 1:2036912/1‑69 (MQ=255) gcggcgCTCCATATTATGCAGCACGCCTTCGAACGGATGACGACGAATGGAGGTATCGCCACGATCGtt > 1:2280773/1‑69 (MQ=255) tattatGCAGCACGCCTTCGAACGGATGACGTCGAATGGAGGTATCGCCACGATCGTTCATGTATTTg < 1:2123679/68‑1 (MQ=255) ttatGCAGCACGCCTTCGATCGGATGACGACGAATg > 1:2301915/1‑36 (MQ=255) ttatGCAGCACGCCTTCGAACGGATGACGACGAAt > 1:2037951/1‑35 (MQ=255) ttatGCAGCACGCCTTCGAACGGATGACGACGAATg > 1:1575689/1‑36 (MQ=255) ttatGCAGCACGCCTTCGAACGGATGACGACGAATg > 1:38914/1‑36 (MQ=255) ttatGCAGCACGCCTTCGAACGGATGACGACGAATg > 1:2980410/1‑36 (MQ=255) ttatGCAGCACGCCTTCGAACGGATGACGACGAATg > 1:2135731/1‑36 (MQ=255) ttatGCAGCACGCCTTCGAACGGATGACGACGAATg > 1:700344/1‑36 (MQ=255) ttatGCAGCACGCCTTCGAACGGATGACGACGAATGGAGGTATCGCCACGATCGTTCATGTATTTGaa > 1:1448678/1‑68 (MQ=255) ttatGCAGCACGCCTTCGAACGGATGACGACGAATGGAGGTATCGCCACGATCGTTCATGTATTTGaa > 1:1272014/1‑68 (MQ=255) ttatGCAGCACGCCTTCGAACGGATGACGACGAATGGAGGTATCGCCACGATCGTTCATGTATTTGaa > 1:989961/1‑68 (MQ=255) ttatGCAGCACGCCTTCGAACGGATGACGACGAATGGAGGTATCGCCACGATCGTTCATGTATTTGaa > 1:397639/1‑68 (MQ=255) ttatGCAGCACGCCTTCGAACGGATGACGACGAATGGAGGTATCGCCACGATCGTTCATGTATTTGaa > 1:2271512/1‑68 (MQ=255) atGCAGCACGCCTTCGAACGGATGACGACGAATGGAGGTATCGCCACGATCGTTCATGTATTTGAATTc > 1:62274/1‑69 (MQ=255) atGCAGCACGCCTTCGAACGGATGACGACGAATGGAGGTATCGCCACGATCGTTCATGTATTTGAATTc > 1:1729173/1‑69 (MQ=255) atGCAGCACGCCTTCGAACGGATGACGACGAATGGAGGTATCGCCACGATCGTTCATGTATTTGAATTc > 1:1732333/1‑69 (MQ=255) atGCAGCACGCCTTCGAACGGATGACGACGAATGGAGGTATCGCCACGATCGTTCATGTATTTGAATTc > 1:291505/1‑69 (MQ=255) atGCAGCACGCCTTCGAACGGATGACGACGAATGGAGGTATCGCCACGATCGTTCATGTATTTGAATTc > 1:2012234/1‑69 (MQ=255) atGCAGCACGCCTTCGAACGGATGACGACGAATGGAGGTATCGCCACGATCGTTCATGTATTTGAATTc > 1:2389243/1‑69 (MQ=255) | TGATAAACTTGGCTAATTCTTCGCGTACCGCGCTGGATTCCGTCTCTTTATAGCGGCGCTCCATATTATGCAGCACGCCTTCGAACGGATGACGACGAATGGAGGTATCGCCACGATCGTTCATGTATTTGAATTC > minE/2811542‑2811677 |
| Alignment Legend |
|---|
Aligned base mismatch/match (shaded by quality score): ATCG/ATCG < 3 ≤ ATCG/ATCG < 27 ≤ ATCG/ATCG < 32 ≤ ATCG/ATCG < 36 ≤ ATCG/ATCG |
Unaligned base: atcg Masked matching base: atcg Alignment gap: ‑ Deleted base: ‑ |