| Predicted mutation | |||||||
|---|---|---|---|---|---|---|---|
| evidence | seq id | position | mutation | freq | annotation | gene | description |
| RA | minE | 2,814,312 | G→A | 38.4% | intergenic (‑397/‑33) | yjcB ← / → yjcC | predicted inner membrane protein/predicted signal transduction protein |
| Read alignment evidence... | |||||||||||
|---|---|---|---|---|---|---|---|---|---|---|---|
| seq id | position | ref | new | freq | score (cons/poly) | reads | annotation | genes | product | ||
| * | minE | 2,814,312 | 0 | G | A | 38.4% | 26.5 / 30.5 | 52 | intergenic (‑397/‑33) | yjcB/yjcC | predicted inner membrane protein/predicted signal transduction protein |
| Reads supporting (aligned to +/- strand): ref base G (12/20); new base A (13/7); total (25/27) | |||||||||||
| Fisher's exact test for biased strand distribution p-value = 8.65e-02 | |||||||||||
| Kolmogorov-Smirnov test that lower quality scores support variant p-value = 3.74e-01 | |||||||||||
AGTGCTATTTATACCGTAAGATTTATCTAAAGACGTCGGTACCCAGGGTTTTCACCTTGCAATGGCCGGGTATAAACAGGCAGGAAATTGATAGCAATGAGTCATCGTGCACGACACCAATT > minE/2814249‑2814370 | aGTGCTATTTATACCGTAAGATTTATCTAAAGACGTCGGTAGCCAGGG‑TTTCACCTTGCAATAACCggg < 1:3238308/69‑1 (MQ=255)aGTGCTATTTATACCGTAAGATTTATCTAAAGACGTCGGTAGCCAGGG‑TTTCACCTTGCAATAACCggg < 1:2987433/69‑1 (MQ=255)aGTGCTATTTATACCGTAAGATTTATCTAAAGACGTCGGTAGCCAGGG‑TTTCACCTTGCAATAACCggg < 1:1905066/69‑1 (MQ=255)aGTGCTATTTATACCGTAAGATTTATCTAAAGACGTCGGTAGCCAGGG‑TTTCACCTTGCAATAACCggg < 1:2724986/69‑1 (MQ=255)aGTGCTATTTATACCGTAAGATTTATCTAAAGACGTCGGTAGCCAGGG‑TTTCACCTTGCAATAACCggg < 1:2693249/69‑1 (MQ=255)aGTGCTATTTATACCGTAAGATTTATCTAAAGACGTCGGTAGCCAGGG‑TTTCACCTTGCAATAACCggg < 1:578851/69‑1 (MQ=255) tataCCGTAAGATTTATCTAAAGACGTCGGTACCCAGGGTTTTCACCTTGCAATGGCCGGGtata < 1:2711607/65‑1 (MQ=255) tataCCGTAAGATTTATCTAAAGACGTCGGTACCCAGGGTTTTCACCTTGCAATGGCCGGGtata < 1:403885/65‑1 (MQ=255) tataCCGTAAGATTTATCTAAAGACGTCGGTACCCAGGGTTTTCACCTTGCAATGGCCGGGTATAAAca > 1:1488352/1‑69 (MQ=255) aaGATTTATCTAAAGACGTCGGTACCCAGGGTTTTCACCTTGCAATGGCCGGGTATAAACAGGCAGGaa > 1:659808/1‑69 (MQ=255) aaGATTTATCTAAAGACGTCGGTACCAAGGGTTTTCACCTTGCAATGGCCGGGTATAAACAGGCAGGaa > 1:603210/1‑69 (MQ=255) aCGTCGGTAGCCAGGG‑TTTCACCTTGCAATAACCggg < 1:461719/37‑1 (MQ=255) cGGTAGCCAGGG‑TTTCACCTTGCAATAACCGGGTATAAACAGGCAGGGAATTGATAGCATTGAGTCATc > 1:3080792/1‑69 (MQ=255) cGGTAGCCAGGG‑TTTCACCTTGCAATAACCGGGTATAAACAGGCAGGGAATTGATAGCAATGAGTCATc > 1:2281768/1‑69 (MQ=255) cGGTAGCCAGGG‑TTTCACCTTGCAATAACCGGGTATAAACAGGCAGGGAATTGATAGCAATGAGTCATc > 1:2594754/1‑69 (MQ=255) cGGTAGCCAGGG‑TTTCACCTTGCAATAACCGGGTATAAACAGGCAGGGAATTGATAGCAATGAGTCATc > 1:3108455/1‑69 (MQ=255) cGGTAGCCAGGG‑TTTCACCTTGCAATAACCGGGTATAAACAGGCAGGGAATTGATAGCAATGAGTCATc > 1:3187634/1‑69 (MQ=255) cGGTAGCCAGGG‑TTTCACCTTGCAATAACCGGGTATAAACAGGCAGGGAATTGATAGCAATGAGTCATc > 1:322369/1‑69 (MQ=255) cGGTAGCCAGGG‑TTTCACCTTGCAATAACCGGGTATAAACAGGCAGGGAATTGATAGCAATGAGTCATc > 1:3369078/1‑69 (MQ=255) cGGTAGCCAGGG‑TTTCACCTTGCAATAACCGGGTATAAACAGGCAGGGAATTGATAGCAATGAGTCATc > 1:355684/1‑69 (MQ=255) cGGTAGCCAGGG‑TTTCACCTTGCAATAACCGGGTATAAACAGGCAGGGAATTGATAGCAATGAGTCATc > 1:488769/1‑69 (MQ=255) cGGTAGCCAGGG‑TTTCACCTTGCAATAACCGGGTATAAACAGGCAGGGAATTGATAGCAATGAGTCATc > 1:1760979/1‑69 (MQ=255) cGGTAGCCAGGG‑TTTCACCTTGCAATAACCGGGTATAAACAGGCAGGGAATTGATAGCAATGAGTCATc > 1:1478700/1‑69 (MQ=255) cGGTAGCCAGGG‑TTTCACCTTGCAATAACCGGGTATAAACAGGCAGGGAATTGATAGCAATGAGTCATc > 1:656043/1‑69 (MQ=255) cGGTAGCCAGGG‑TTTCACCTTGCAATAACCGGGTATAAACAGGCAGGGAATTGATAGCAATGAGTCATc > 1:1021446/1‑69 (MQ=255) aCCCAGGGTTTTCACCTTGCAATGGCCGGGTATAAACAGGCAGGAAATTGATAGCAATGAGTCATCGTg < 1:1119463/69‑1 (MQ=255) aCCCAGGGTTTTCACCTTGCAATGGCCGGGTATAAACAGGCAGGAAATTGATAGCAATGAGTCATCGTg < 1:3097213/69‑1 (MQ=255) aCCCAGGGTTTTCACCTTGCAATGGCCGGGTATAAACAGGCAGGAAATTGATAGCAATGAGTCATCGTg < 1:3093138/69‑1 (MQ=255) aCCCAGGGTTTTCACCTTGCAATGGCCGGGTATAAACAGGCAGGAAATTGATAGCAATGAGTCATCGTg < 1:1976477/69‑1 (MQ=255) ttttCACCTTGCAATGGCCGGGTATAAACAGGCAGGAAATTGATAGCAATGAGTCATCGTGc > 1:2554444/1‑62 (MQ=255) ttttCACCTTGCAATGGCCGGGTATAAACAGGCAGGAAATTGATAGCAATGAGTCATCGTGCACGaca > 1:908047/1‑68 (MQ=255) ttttCACCTTGCAATGGCCGGGTATAAACAGGCAGGAAATTGATAGCAATGAGTCATCGTGCACGaca > 1:501819/1‑68 (MQ=255) ttttCACCTTGCAATGGCCGGGTATAAACAGGCAGGAAATTGATAGCAATGAGTCATCGTGCACGaca > 1:464038/1‑68 (MQ=255) ttttCACCTTGCAATGGCCGGGTATAAACAGGCAGGAAATTGATAGCAATGAGTCATCGTGCACGaca > 1:1969554/1‑68 (MQ=255) ttttCACCTTGCAATGGCCGGGTATAAACAGGCAGGAAATTGATAGCAATGAGTCATCGTGCACGaca > 1:2074376/1‑68 (MQ=255) ttttCACCTTGCAATGGCCGGGTATAAACAGGCAGGAAATTGATAGCAATGAGTCATCGTGCACGaca > 1:2289377/1‑68 (MQ=255) ttttCACCTTGCAATGGCCGGGTATAAACAGGCAGGAAATTGATAGCAATGAGTCATCGTGCACGaca > 1:3316117/1‑68 (MQ=255) ttttCACCTTGCAATGGCCGGGTATAAACAGGCAGGAAATTGATAGCAATGAGTCATCGTGCACGaca > 1:2432490/1‑68 (MQ=255) aCCTTGCAATGGCCGGGTATAAACAGGCAGGAAATTGATAGCAATGAGTCATCGTGCACGATACCAAt < 1:439765/68‑1 (MQ=255) aCCTTGCAATGGCCGGGTATAAACAGGCAGGAAATTGATAGCAATGAGTCATCGTGCACGACACCAAt < 1:3404393/68‑1 (MQ=255) aCCTTGCAATGGCCGGGTATAAACAGGCAGGAAATTGATAGCAATGAGTCATCGTGCACGACACCAAt < 1:3421042/68‑1 (MQ=255) aCCTTGCAATGGCCGGGTATAAACAGGCAGGAAATTGATAGCAATGAGTCATCGTGCACGACACCAAt < 1:458023/68‑1 (MQ=255) aCCTTGCAATGGCCGGGTATAAACAGGCAGGAAATTGATAGCAATGAGTCATCGTGCACGACACCAAt < 1:249436/68‑1 (MQ=255) aCCTTGCAATGGCCGGGTATAAACAGGCAGGAAATTGATAGCAATGAGTCATCGTGCACGACACCAAt < 1:2876235/68‑1 (MQ=255) aCCTTGCAATGGCCGGGTATAAACAGGCAGGAAATTGATAGCAATGAGTCATCGTGCACGACACCAAt < 1:1890428/68‑1 (MQ=255) aCCTTGCAATGGCCGGGTATAAACAGGCAGGAAATTGATAGCAATGAGTCATCGTGCACGACACCAAt < 1:2911339/68‑1 (MQ=255) aCCTTGCAATGGCCGGGTATAAACAGGCAGGAAATTGATAGCAATGAGTCATCGTGCACGACACCAAt < 1:1663858/68‑1 (MQ=255) aCCTTGCAATGGCCGGGTATAAACAGGCAGGAAATTGATAGCAATGAGTCATCGTGCACGACACCAAt < 1:1365494/68‑1 (MQ=255) aCCTTGCAATGGCCGGGTATAAACAGGCAGGAAATTGATAGCAATGAGTCATCGTGCACGACACCAAt < 1:1329331/68‑1 (MQ=255) aCCTTGCAATGGCCGGGTATAAACAGGCAGGAAATTGATAGCAATGAGTCATCGTGCACGACACCAAt < 1:1272227/68‑1 (MQ=255) aCCTTGCAATGGCCGGGTATAAACAGGCAGGAAATTGATAGCAATGAGTCATCGTGCACGACACCAAt < 1:3002310/68‑1 (MQ=255) aCCTTG‑AATGGCCGGGTATAAACAGGCAGGAAATTGATAGCAATGAGTCATCGTGCACGACACCAAtt < 1:2380075/68‑1 (MQ=255) | AGTGCTATTTATACCGTAAGATTTATCTAAAGACGTCGGTACCCAGGGTTTTCACCTTGCAATGGCCGGGTATAAACAGGCAGGAAATTGATAGCAATGAGTCATCGTGCACGACACCAATT > minE/2814249‑2814370 |
| Alignment Legend |
|---|
Aligned base mismatch/match (shaded by quality score): ATCG/ATCG < 3 ≤ ATCG/ATCG < 14 ≤ ATCG/ATCG < 32 ≤ ATCG/ATCG < 36 ≤ ATCG/ATCG |
Unaligned base: atcg Masked matching base: atcg Alignment gap: ‑ Deleted base: ‑ |