| Predicted mutation | |||||||
|---|---|---|---|---|---|---|---|
| evidence | seq id | position | mutation | freq | annotation | gene | description |
| RA | minE | 2,815,784 | C→T | 49.3% | G480G (GGC→GGT) | yjcC → | predicted signal transduction protein |
| Read alignment evidence... | |||||||||||
|---|---|---|---|---|---|---|---|---|---|---|---|
| seq id | position | ref | new | freq | score (cons/poly) | reads | annotation | genes | product | ||
| * | minE | 2,815,784 | 0 | C | T | 49.3% | ‑0.6 / 66.3 | 75 | G480G (GGC→GGT) | yjcC | predicted signal transduction protein |
| Reads supporting (aligned to +/- strand): ref base C (14/24); new base T (20/17); total (34/41) | |||||||||||
| Fisher's exact test for biased strand distribution p-value = 1.67e-01 | |||||||||||
| Kolmogorov-Smirnov test that lower quality scores support variant p-value = 1.00e+00 | |||||||||||
CATTTGATTGCGGAACACATCATCGAGCTGGCGCACAGCCTGGGGTTAAAAACGATCGCTGAAGGCGTCGAAACTGAGGAGCAGGTTAACTGGCTGCGCAAACGCGGCGTGCGCTATTGCCAGGGATGGTTCTT > minE/2815719‑2815852 | cATTTGATTGCGGAACACATCATCGAGCTGGCGCACAGCCTGGGGTTAAAAACGATCGCTGAAGGCGt > 1:3273973/1‑68 (MQ=255) ttGATTGCGGAACACATCATCGAGCTGGCGCACAGCCTGGGGTTAAAAACGATCGCTGAAGGTGTCGaa < 1:2663864/69‑1 (MQ=255) ttGATTGCGGAACACATCATCGAGCTGGCGCACAGCCTGGGGTTAAAAACGATCGCTGAAGGTGTCGaa < 1:1696906/69‑1 (MQ=255) ttGATTGCGGAACACATCATCGAGCTGGCGCACAGCCTGGGGTTAAAAACGATCGCTGAAGGTGTCGaa < 1:1726527/69‑1 (MQ=255) ttGATTGCGGAACACATCATCGAGCTGGCGCACAGCCTGGGGTTAAAAACGATCGCTGAAGGTGTCGaa < 1:666303/69‑1 (MQ=255) ttGATTGCGGAACACATCATCGAGCTGGCGCACAGCCTGGGGTTAAAAACGATCGCTGAAGGTGTCGaa < 1:3143016/69‑1 (MQ=255) ttGATTGCGGAACACATCATCGAGCTGGCGCACAGCCTGGGGTTAAAAACGATCGCTGAAGGTGTCGaa < 1:1941330/69‑1 (MQ=255) ttGATTGCGGAACACATCATCGAGCTGGCGCACAGCCTGGGGTTAAAAACGATCGCTGAAGGTGTCGaa < 1:31080/69‑1 (MQ=255) ttGATTGCGGAACACATCATCGAGCTGGCGCACAGCCTGGGGTTAAAAACGATCGCTGAAGGTGTCGaa < 1:2040497/69‑1 (MQ=255) ttGATTGCGGAACACATCATCGAGCTGGCGCACAGCCTGGGGTTAAAAACGATCGCTGAAGGTGTCGaa < 1:2049035/69‑1 (MQ=255) ttGATTGCGGAACACATCATCGAGCTGGCGCACAGCCTGGGGTTAAAAACGATCGCTGAAGGTGTCGaa < 1:1409419/69‑1 (MQ=255) ttGATTGCGGAACACATCATCGAGCTGGCGCACAGCCTGGGGTTAAAAACGATCGCTGAAGGTGTCGaa < 1:2857898/69‑1 (MQ=255) ttGATTGCGGAACACATCATCGAGCTGGCGCACAGCCTGGGGTTAAAAACGATCGCTGAAGGTGTCGaa < 1:2520623/69‑1 (MQ=255) ttGATTGCGGAACACATCATCGAGCTGGCGCACAGCCTGGGGTTAAAAACGATCGCTGAAGGTGTCGaa < 1:930662/69‑1 (MQ=255) ttGATTGCGGAACACATCATCGAGCTGGCGCACAGCCTGGGGTTAAAAACGATCGCTGAAGGTGTCGaa < 1:2551853/69‑1 (MQ=255) tGATTGCGGAACACATCATCGAGCTGGCGCACAGCCTGGGGTTAAAAACGATCGCTGAAGGTGTCGaa < 1:1981336/68‑1 (MQ=255) tGATTGCGGAACACATCATCGAGCTGGCGCACAGCCTGGGGTTAAAAACGATCGCTGAAGGTGTCGaa < 1:3288983/68‑1 (MQ=255) tGCTGAACACATCATCTAGCTGGCGCACAGCCTGGGGTTAAAAACGATCGCTGAAGGCGTCGAAACTg < 1:1037552/68‑1 (MQ=255) tGCGGAACACATCATCGAGCTGGCGCACAGCCTGGGTTTAAAAACGATCGCTGAAGGCGTCGAAACTg < 1:2859344/68‑1 (MQ=255) tGCGGAACACATCATCGAGCTGGCGCACAGCCTGGGGTTAAAAACGATCGCTGAAGGCGTCGAAACTg < 1:1140569/68‑1 (MQ=255) tGCGGAACACATCATCGAGCTGGCGCACAGCCTGGGGTTAAAAACGATCGCTGAAGGCGTCGAAACTg < 1:1196574/68‑1 (MQ=255) tGCGGAACACATCATCGAGCTGGCGCACAGCCTGGGGTTAAAAACGATCGCTGAAGGCGTCGAAACTg < 1:2494990/68‑1 (MQ=255) tGCGGAACACATCATCGAGCTGGCGCACAGCCTGGGGTTAAAAACGATCGCTGAAGGCGTCGAAACTg < 1:3044452/68‑1 (MQ=255) tGCGGAACACATCATCGAGCTGGCGCACAGCCTGGGGTTAAAAACGATCGCTGAAGGCGTCGAAACTg < 1:193281/68‑1 (MQ=255) cacaTCATCGAGCTGGCGCACAGCCTGGGGTTAAAAACGATCGCTGAAGGCGTCGAAACTGAGGAGCAg < 1:1928155/69‑1 (MQ=255) acaTCATCGAGCTGGCGCACAGCCTGGGGTTAAAAACGATCGCTGAAGGTGTCGaa < 1:1620744/56‑1 (MQ=255) atcatcGAGCTGGCGCACAGCCTGGGGTTAAAAACGATCGCTGAAGGCGTCGAAACTGAGGAGCAGGtt < 1:2698648/69‑1 (MQ=255) atcGAGCTGGCGCACAGCCTGGGGTTAAAAACGATCGCTGAAGGCGTCGAAACTGAGGAGCAGGTTAAc > 1:1727220/1‑69 (MQ=255) atcGAGCTGGCGCACAGCCTGGGGTTAAAAACGATCGCTGAAGGCGTCGAAACTGAGGAGCAGGTTAAc > 1:2208279/1‑69 (MQ=255) atcGAGCTGGCGCACAGCCTGGGGTTAAAAACGATCGCTGAAGGCGTCGAAACTGAGGAGCAGGTTAAc > 1:1523601/1‑69 (MQ=255) atcGAGCTGGCGCACAGCCTGGGGTTAAAAACGATCGCTGAAGGCGTCGAAACTGAGGAGCAGGTTAAc > 1:3335191/1‑69 (MQ=255) atcGAGCTGGCGCACAGCCTGGGGTTAAAAACGATCGCTGAAGGCGTCGAAACTGAGGAGCAGGTTAAc > 1:550321/1‑69 (MQ=255) atcGACCTGGCGCACAGCCTGGGGTTAAAAACGATCGCTGAAGGCGTCGAAACTGAGGAGCAGGTTAAc > 1:246671/1‑69 (MQ=255) cGAGCTGGCTCACAGCCTGGGGTTAAAAACGATCGCTGAAGGCGTCGAAACTGAGGAGCAGGTTAACTg < 1:2168687/69‑1 (MQ=255) cGAGCTGGCGCACAGCCTGGGGTTAAAAACGATCGCTGAAGGCGTCGAAACTGAGGAGCAGGTTAACTg < 1:2551888/69‑1 (MQ=255) ttAAAAACGATCGCTGAAGGCGTCGAAACTGAGGAGc > 1:1662630/1‑37 (MQ=255) ttAAAAACGATCGCTGAAGGCGTCGAAACTGAGGAGc > 1:2258093/1‑37 (MQ=255) ttAAAAACGATCGCAGAAGGCGTCGAAACTGAGGAGc > 1:2867529/1‑37 (MQ=255) gtAAAAACGATCGCTGAAGGCGTCGAAACTGAGGAGc > 1:1734270/2‑37 (MQ=255) aaaaaCGATCGCTGAAGGCGTCGAAACTGAGGAGCAGGTTAACTGGCTGCGCaaa > 1:1846805/1‑55 (MQ=255) aaaaaCGATCGCTGAAGGCGTCGAAACTGAGGAGCAGGTTAACTGGCTGCGCaaa > 1:2199035/1‑55 (MQ=255) aaaaaCGATCGCTGAAGGCGTCGAAACTGAGGAGCAGGTTAACTGGCTGCGCaaa > 1:3347940/1‑55 (MQ=255) cGCTGAAGGTGTCGAAACTGAGGCGCAGGTTAACTGGCTg > 1:722934/1‑40 (MQ=255) cGCTGAAGGTGTCGAAACTGAGGCGCAGGTTAACTGGCTGCGCAAACGCGGCGTGCGCTATTGCCAggg > 1:225881/1‑69 (MQ=255) cGCTGAAGGTGTCGAAACTGAGGCGCAGGTTAACTGGCTGCGCAAACGCGGCGTGCGCTATTGCCAggg > 1:2723258/1‑69 (MQ=255) cGCTGAAGGTGTCGAAACTGAGGCGCAGGTTAACTGGCTGCGCAAACGCGGCGTGCGCTATTGCCAggg > 1:2478563/1‑69 (MQ=255) cGCTGAAGGTGTCGAAACTGAGGCGCAGGTTAACTGGCTGCGCAAACGCGGCGTGCGCTATTGCCAggg > 1:2822926/1‑69 (MQ=255) cGCTGAAGGTGTCGAAACTGAGGCGCAGGTTAACTGGCTGCGCAAACGCGGCGTGCGCTATTGCCAggg > 1:2326052/1‑69 (MQ=255) cGCTGAAGGTGTCGAAACTGAGGCGCAGGTTAACTGGCTGCGCAAACGCGGCGTGCGCTATTGCCAggg > 1:1285751/1‑69 (MQ=255) cGCTGAAGGTGTCGAAACTGAGGCGCAGGTTAACTGGCTGCGCAAACGCGGCGTGCGCTATTGCCAggg > 1:1675548/1‑69 (MQ=255) cGCTGAAGGTGTCGAAACTGAGGCGCAGGTTAACTGGCTGCGCAAACGCGGCGTGCGCTATTGCCAggg > 1:928102/1‑69 (MQ=255) cGCTGAAGGTGTCGAAACTGAGGCGCAGGTTAACTGGCTGCGCAAACGCGGCGTGCGCTATTGCCAggg > 1:677366/1‑69 (MQ=255) cGCTGAAGGTGTCGAAAATGAGGCGCAGGTTAACTGGCTGCGCAAACGCGGCGTGCGCTATTGCCAggg > 1:672050/1‑69 (MQ=255) cGCTGAAGGTGTCGAAAATGAGGCGCAGGTTAACTGGCTGCGCAAACGCGGCGTGCGCTATTGCCAggg > 1:964802/1‑69 (MQ=255) cGCTGAAGGTGTCGAAAATGAGGCGCAGGTTAACTGGCTGCGCAAACGCGGCGTGCGCTATTGCCAggg > 1:627946/1‑69 (MQ=255) cGCTGAAGGTGTCGAAAATGAGGCGCAGGTTAACTGGCTGCGCAAACGCGGCGTGCGCTATTGCCAggg > 1:2344548/1‑69 (MQ=255) cGCTGAAGGTGTCGAAAATGAGGCGCAGGTTAACTGGCTGCGCAAACGCGGCGTGCGCTATTGCCAggg > 1:1050603/1‑69 (MQ=255) cGCTGAAGGTGTCGAAAATGAGGCGCAGGTTAACTGGCTGCGCAAACGCGGCGTGCGCTATTGCCAggg > 1:1596251/1‑69 (MQ=255) cGCTGAAGGTGTCGAAAATGAGGCGCAGGTTAACTGGCTGCGCAAACGCGGCGTGCGCTATTGCCAggg > 1:1691230/1‑69 (MQ=255) cGCTGAAGGTGTCGAAAATGAGGCGCAGGTTAACTGGCTGCGCAAACGCGGCGTGCGCTATTGCCAggg > 1:1792080/1‑69 (MQ=255) cGCTGAAGGTGTCGAAAATGAGGCGCAGGTTAACTGGCTGCGCAAACGCGGCGTGCGCTATTGCCAggg > 1:1852595/1‑69 (MQ=255) cGCTGAAGGTGTCGAAAATGAGGCGCAGGTTAACTGGCTGCGCAAACGCGGCGTGCGCTATTGCCAggg > 1:1948027/1‑69 (MQ=255) cGCTGAAGGCGTCGAAACTGAGGAGCAGGTTAACTGGCTGCGCAAACGCGGCGTGCGCTATTGcc < 1:2068033/65‑1 (MQ=255) cGCTGAAGGCGTCGAAACTGAGGAGCAGGTTAACTGGCTGCGCAAACGCGGCGTGCGCTATTGcc < 1:1924131/65‑1 (MQ=255) cGCTGAAGGCGTCGAAACTGAGGAGCAGGTTAACTGGCTGCGCAAACGCGGCGTGCGCTATTGcc < 1:1840583/65‑1 (MQ=255) cGCTGAAGGCGTCGAAACTGAGGAGCAGGTTAACTGGCTGCGCAAACGCGGCGTGCGCTATTGcc < 1:2105733/65‑1 (MQ=255) cGCTGAAGGCGTCGAAACTGAGGAGCAGGTTAACTGGCTGCGCAAACGCGGCGTGCGCTATTGcc < 1:2175592/65‑1 (MQ=255) cGCTGAAGGCGTCGAAACTGAGGAGCAGGTTAACTGGCTGCGCAAACGCGGCGTGCGCTATTGcc < 1:1640985/65‑1 (MQ=255) cGCTGAAGGCGTCGAAACTGAGGAGCAGGTTAACTGGCTGCGCAAACGCGGCGTGCGCTATTGcc < 1:230089/65‑1 (MQ=255) cGCTGAAGGCGTCGAAACTGAGGAGCAGGTTAACTGGCTGCGCAAACGCGGCGTGCGCTATTGcc < 1:1456224/65‑1 (MQ=255) cGCTGAAGGCGTCGAAACTGAGGAGCAGGTTAACTGGCTGCGCAAACGCGGCGTGCGCTATTGcc < 1:1421126/65‑1 (MQ=255) tGAAGGCGTCGAAACTGAGGAGCAGGTTAACTGGCTGCGCAAACGCGGCGTGCGCTATTGCCAGGGAt < 1:188424/68‑1 (MQ=255) tGAAGGCGTCGAAACTGAGGAGCAGGTTAACTGGCTGCGCAAACGCGGCGTGCGCTATTGCCAGGGAt < 1:1503947/68‑1 (MQ=255) tGAAGGCGTCGAAACTGAGGAGCAGGTTAACTGGCTGCGCAAACGCGGCGTGCGCTATTGCCAGGGAt < 1:1192364/68‑1 (MQ=255) tGAAGGCGTCGAAACTGAGGAGCAGGTTAACTGGCTGCGCAAACGCGGCGTGCGCTATTGCCAGGGAt < 1:264305/68‑1 (MQ=255) cGTCGAAACTGAGGAGCAGGTTAACTGGCTGCGCAAACGCGGCGTGCGCTATTGCCAGGGATGGTTCtt < 1:3035819/69‑1 (MQ=255) cGTCGAAACTGAGGAGCAGGTTAACTGGCTGCGCAAACGCGGCGTGCGCTATTGCCAGGGATGGTTCtt < 1:1788538/69‑1 (MQ=255) cGTCGAAACTGAGGAGCAGGTTAACTGGCTGCGCAAACGCGGCGTGCGCTATTGCCAGGGATGGTTCtt < 1:906366/69‑1 (MQ=255) | CATTTGATTGCGGAACACATCATCGAGCTGGCGCACAGCCTGGGGTTAAAAACGATCGCTGAAGGCGTCGAAACTGAGGAGCAGGTTAACTGGCTGCGCAAACGCGGCGTGCGCTATTGCCAGGGATGGTTCTT > minE/2815719‑2815852 |
| Alignment Legend |
|---|
Aligned base mismatch/match (shaded by quality score): ATCG/ATCG < 3 ≤ ATCG/ATCG < 27 ≤ ATCG/ATCG < 32 ≤ ATCG/ATCG < 36 ≤ ATCG/ATCG |
Unaligned base: atcg Masked matching base: atcg Alignment gap: ‑ Deleted base: ‑ |