Predicted mutation | |||||||
---|---|---|---|---|---|---|---|
evidence | seq id | position | mutation | freq | annotation | gene | description |
RA | minE | 2,816,585 | C→A | 34.0% | P81P (CCC→CCA) | soxR → | DNA‑binding transcriptional dual regulator, Fe‑S center for redox‑sensing |
Read alignment evidence... | |||||||||||
---|---|---|---|---|---|---|---|---|---|---|---|
seq id | position | ref | new | freq | score (cons/poly) | reads | annotation | genes | product | ||
* | minE | 2,816,585 | 0 | C | A | 34.0% | 148.8 / 89.0 | 129 | P81P (CCC→CCA) | soxR | DNA‑binding transcriptional dual regulator, Fe‑S center for redox‑sensing |
Reads supporting (aligned to +/- strand): ref base C (37/48); new base A (25/19); total (62/67) | |||||||||||
Fisher's exact test for biased strand distribution p-value = 1.94e-01 | |||||||||||
Kolmogorov-Smirnov test that lower quality scores support variant p-value = 2.47e-02 |
Only 100 of 130 total aligned reads displayed.
TTATCAAAATTGCTCAGCGTATTGGCATTCCGCTGGCGACCATTGGTGAAGCGTTTGGCGTGTTGCCCGAAGGGCATACGTTAAGTGCGAAAGAGTGGAAACAGCTTTCGTCCCAATGGCGAGAAGAGTTGG > minE/2816518‑2816649 | ttATCAAAATTGCTCAGCGTATTGGCATTCCGCTGGCGACCATTGGTGAAGCGTTTGGCGTGTTGccct < 1:798039/69‑2 (MQ=255) ttATCAAAATTGCTCAGCGTATTGGCATTCCGCTGGCGACCATTGGTGAAGCGTTTGGCGTGTTGCCCg < 1:926451/69‑1 (MQ=255) ttATCAAAATTGCTCAGCGTATTGGCATTCCGCTGGCGACCATTGGTGAAGCGTTTGGCGTGTTGCCCg < 1:1681349/69‑1 (MQ=255) ttATCAAAATTGCTCAGCGTATTGGCATTCCGCTGGCGACCATTGGTGAAGCGTTTGGCGTGTTGCCCg < 1:3149205/69‑1 (MQ=255) ttATCAAAATTGCTCAGCGTATTGGCATTCCGCTGGCGACCATTGGTGAAGCGTTTGGCGTGTTGCCCg < 1:2767766/69‑1 (MQ=255) ttATCAAAATTGCTCAGCGTATTGGCATTCCGCTGGCGACCATTGGTGAAGCGTTTGGCGTGTTGCCCg < 1:3360676/69‑1 (MQ=255) ttATCAAAATTGCTCAGCGTATTGGCATTCCGCTGGCGACCATTGGTGAAGCGTTTGGCGTGTTGCCCg < 1:1936821/69‑1 (MQ=255) ttATCAAAATTGCTCAGCGTATTGGCATTCCGCTGGCGACCATTGGTGAAGCGTTTGGCGTGTTGCCCg < 1:1943523/69‑1 (MQ=255) ttATCAAAATTGCTCAGCGTATTGGCATTCCGCTGGCGACCATTGGTGAAGCGTTTGGCGTGTTGCCCg < 1:2756331/69‑1 (MQ=255) ttATCAAAATTGCTCAGCGTATTGGCATTCCGCTGGCGACCATTGGTGAAGCGTTTGGCGTGTTGCCCg < 1:493999/69‑1 (MQ=255) ttATCAAAATTGCTCAGCGTATTGGCATTCCGCTGGCGACCATTGGTGAAGCGTTTGGCGTGTTGCCCg < 1:2081420/69‑1 (MQ=255) ttATCAAAATTGCTCAGCGTATTGGCATTCCGCTGGCGACCATTGGTGAAGCGTTTGGCGTGTTGCCCg < 1:2206613/69‑1 (MQ=255) ttATCAAAATTGCTCAGCGTATTGGCATTCCGCTGGCGACCATTGGTGAAGCGTTTGGCGTGTTGCCCg < 1:719858/69‑1 (MQ=255) ttATCAAAATTGCTCAGCGTATTGGCATTCCGCTGGCGACCATTGGTGAAGCGTTTGGCGTGTTGCCCg < 1:742553/69‑1 (MQ=255) ttATCAAAATTGCTCAGCGTATTGGCATTCCGCTGGCGACCATTGGTGAAGCGTTTGGCGTGTTGCCCg < 1:798020/69‑1 (MQ=255) ttATCAAAATTGCTCAGCGTATTGGCATTCCGCTGGCGACCATTGGTGAAGCGTTTGGCGTGTTGCCCg < 1:1032589/69‑1 (MQ=255) tATCAAAATTGCTCAGCGTATTGGCATTCCGCTGGCGACCATTGGTGAAGCGTTTGGCGTGTTGCCCg < 1:2375737/68‑1 (MQ=255) aaTTGCTCAGCGTATTGGCATTCCGCTGGCGACCATTGGTGAAGCGTTTGGCGTGTTGCCCGAAGGGCa < 1:2136370/69‑1 (MQ=255) aaTTGCTCAGCGTATTGGCATTCCGCTGGCGACCATTGGTGAAGCGTTTGGCGTGTTGCCCGAAGGGCa < 1:2629852/69‑1 (MQ=255) aaTTGCTCAGCGTATTGGCATTCCGCTGGCGACCATTGGTGAAGCGTTTGGCGTGTTGCCCGAAGGGCa < 1:1166214/69‑1 (MQ=255) ttGGCATTCCGCTCGCAACCATTCGTGAAGCGTTTTGCGTGTTGCCAGAAGGGCATACGTTAAGTGCGa < 1:2474811/69‑1 (MQ=255) ttGGCATTCCGCTCGCAACCATTCGTGAAGCGTTTGGCGTGTTGCCAGAAGGGCATACGTTAAGTGCGa < 1:2100571/69‑1 (MQ=255) ttGGCATTCCGCTCGCAACCATTCGTGAAGCGTTTGGCGTGTTGCCAGAAGGGCATACGTTAAGTGCGa < 1:2448765/69‑1 (MQ=255) ttGGCATTCCGCTCGCAACCATTCGTGAAGCGTTTGGCGTGTTGCCAGAAGGGCATACGTTAAGTGCGa < 1:2781181/69‑1 (MQ=255) ttGGCATTCCGCTCGCAACCATTCGTGAAGCGTTTGGCGTGTTGCCAGAAGGGCATACGTTAAGTGCGa < 1:2330365/69‑1 (MQ=255) ttGGCATTCCGCTCGCAACCATTCGTGAAGCGTTTGGCGTGTTGCCAGAAGGGCATACGTTAAGTGCGa < 1:3017266/69‑1 (MQ=255) ttGGCATTCCGCTCGCAACCATTCGTGAAGCGTTTGGCGTGTTGCCAGAAGGGCATACGTTAAGTGCGa < 1:389300/69‑1 (MQ=255) ttGGCATTCCGCTCGCAACCATTCGTGAAGCGTTTGGCGTGTTGCCAGAAGGGCATACGTTAAGTGCGa < 1:1451770/69‑1 (MQ=255) ttGGCATTCCGCTCGCAACCATTCGTGAAGCGTTTGGCGTGTTGCCAGAAGGGCATACGTTAAGTGCGa < 1:1628997/69‑1 (MQ=255) ttGGCATTCCGCTCGCAACCATTCGTGAAGCGTTTGGCGTGTTGCCAGAAGGGCATACGTTAAGTGCGa < 1:559051/69‑1 (MQ=255) ttGGCATTCCGCTCGCAACCATTCGTGAAGCGTTTGGCGTGTTGCCAGAAGGGCAAACGTTAAGTGCGa < 1:3035956/69‑1 (MQ=255) attgCATTCCGCTCGCAACCATTCGTGAAGCGTTTGGCGTGTTGCCAGAAGGGCATACGTTAAGTGCGa < 1:164504/66‑1 (MQ=255) tGGCATTCCGCTCGCAACCATTCGTGAAGCGTTTGGCGTGTTGCCAGAAGGGCATACGTTAAGTGCGa < 1:1304045/68‑1 (MQ=255) tGGCATTCCGCTCGCAACCATTCGTGAAGCGTTTGGCGTGTTGCCAGAAGGGCATACGTTAAGTGCGa < 1:1338610/68‑1 (MQ=255) cATTCCGCTGGCGACCATTGGTGAAGCGTTTGGCGTGTTGCCCg < 1:1284860/44‑1 (MQ=255) cATTCCGCTGGCGACCATTGGTGAAGCGTTTGGCGTGTTGCCCGAAGGGCATACGTTAAGTGCGAAag < 1:273465/68‑1 (MQ=255) cATTCCGCTGGCGACCATTGGTGAAGCGTTTGGCGTGTTGCCCGAAGGGCATACGTTAAGTGCGAAag < 1:1102852/68‑1 (MQ=255) cATTCCGCTGGCGACCATTGGTGAAGCGTTTGGCGTGTTGCCCGAAGGGCATACGTTAAGTGCGAAag < 1:848364/68‑1 (MQ=255) cATTCCGCTGGCGACCATTGGTGAAGCGTTTGGCGTGTTGCCCGAAGGGCATACGTTAAGTGCGAAag < 1:1325157/68‑1 (MQ=255) cATTCCGCTGGCGACCATTGGTGAAGCGTTTGGCGTGTTGCCCGAAGGGCATACGTTAAGTGCGAAag < 1:2870671/68‑1 (MQ=255) aTTCCGCTGGCGACCATTGGTTAAGCGTTTGGCGTGTTGCCCGAAGGGCATACGTTAAGTGCGAAagag > 1:666309/1‑69 (MQ=255) aTTCCGCTGGCGACCATTGGTGAAGCGTTTGGCGTGTTGCCCGAAGGGCATACGTTAAGTGCGAAagag > 1:3416723/1‑69 (MQ=255) aTTCCGCTGGCGACCATTGGTGAAGCGTTTGGCGTGTTGCCCGAAGGGCATACGTTAAGTGCGAAagag > 1:706662/1‑69 (MQ=255) aTTCCGCTGGCGACCATTGGTGAAGCGTTTGGCGTGTTGCCCGAAGGGCATACGTTAAGTGCGAAagag > 1:3179089/1‑69 (MQ=255) tCCGCTGGCGACCATTGGTGAAGCGTTTGGCGTGTTGCCCGAAGGGCATACGTTAAGTGCGAAAGAGt > 1:2993096/1‑68 (MQ=255) tCCGCTGGCGACCATTGGTGAAGCGTTTGGCGTGTTGCCCGAAGGGCATACGTTAAGTGCGAAAGAGt > 1:2384717/1‑68 (MQ=255) ccGCTGGCGACCATTGGTGAAGCGTTTGGCGTGTTGCCCGAAGGGCATACGtt > 1:235201/1‑53 (MQ=255) ccGCTGGCGACCATTGGTGAAGCGTTTGGCGTGTTGCCCGAAGGGCATACGtt > 1:1734893/1‑53 (MQ=255) ccGCTGGCGACCATTGGTGAAGCGTTTGGCGTGTTGCCCGAAGGGCATACGtt > 1:2239411/1‑53 (MQ=255) ccGCTGGCGACCATTGGTGAAGCGTTTGGCGTGTTGCCCGAAGGGCATACGtt > 1:2525171/1‑53 (MQ=255) ccGCTGGCGACCATTGGTGAAGCGTTTGGCGTGTTGCCCGAAGGGCATACGtt > 1:2104084/1‑53 (MQ=255) ccGCTGGCGACCATTGGTGAAGCGTTTGGCGTGTTGCCCGAAGGGCATACGTTAAGTGCGAAAGAGTg > 1:3109925/1‑68 (MQ=255) ccGCTGGCGACCATTGGTGAAGCGTTTGGCGTGTTGCCCGAAGGGCATACGTTAAGTGCGAAAGAGTg > 1:2958212/1‑68 (MQ=255) ccGCTGGCGACCATTGGTGAAGCGTTTGGCGTGTTGCCCGAAGGGCATACGTTAAGTGCGAAAGAGTg > 1:2849945/1‑68 (MQ=255) ccGCTGGCGACCATTGGTGAAGCGTTTGGCGTGTTGCCCGAAGGGCATACGTTAAGTGCGAAAGAGTg > 1:1490998/1‑68 (MQ=255) ccGCTGGCGACCATTGGTGAAGCGTTTGGCGTGTTGCCCGAAGGGCATACGTTAAGTGCGAAAGAGTg > 1:1489265/1‑68 (MQ=255) ccGCTGGCGACCATTGGTGAAGCGTTTGGCGTGTTGCCCGAAGGGCATACGTTAAGTGCGAAAGAGTg > 1:3322117/1‑68 (MQ=255) ccGCTGGCGACCATTGGTGAAGCGTTTGGCGTGTTGCCCGAAGGGCATACGTTAAGTGCGAAAGAGTg > 1:2746331/1‑68 (MQ=255) ccGCTGGCGACCATTGGTGAAGCGTTTGGCGTGTTGCCCGAAGGGCATACGTTAAGTGCGAAAGAGTg > 1:2729382/1‑68 (MQ=255) ccGCTGGCGACCATTGGTGAAGCGTTTGGCGTGTTGCCCGAAGGGCATACGTTAAGTGCGAAAGAGTg > 1:3390260/1‑68 (MQ=255) ccGCTGGCGACCATTGGTGAAGCGTTTGGCGTGTTGCCCGAAGGGCATACGTTAAGTGCGAAAGAGTg > 1:1470193/1‑68 (MQ=255) ccGCTGGCGACCATTGGTGAAGCGTTTGGCGTGTTGCCCGAAGGGCATACGTTAAGTGCGAAAGAGTg > 1:1415849/1‑68 (MQ=255) ccGCTGGCGACCATTGGTGAAGCGTTTGGCGTGTTGCCCGAAGGGCATACGTTAAGTGCGAAAGAGTg > 1:1158771/1‑68 (MQ=255) ccGCTGGCGACCATTGGTGAAGCGTTTGGCGTGTTGCCCGAAGGGCATACGTTAAGTGCGAAAGAGTg > 1:1128475/1‑68 (MQ=255) ccGCTGGCGACCATTGGTGAAGCGTTTGGCGTGTTGCCCGAAGGGCATACGTTAAGTGCGAAAGAGTg > 1:845242/1‑68 (MQ=255) ccGCTGGCGACCATTGGTGAAGCGTTTGGCGTGTTGCCCGAAGGGCATACGTTAAGTGCGAAAGAGTg > 1:2374068/1‑68 (MQ=255) gAAGCGTTTGGCGTGTTGCCCGAAGGGCATACGTTAAGTGCGAAAGAGTGGAAACAGCTTTCGTCCCaa > 1:1557562/1‑69 (MQ=255) aaGCGTTTGGCGTGTTGCCAGAAGGGCATACGTTAAGTGCGa < 1:332739/42‑1 (MQ=255) aaGCGTTTGGCGTGTTGCCAGAAGGGCATACGTTAAGTGCGAAAGAGt > 1:3125038/1‑48 (MQ=255) aaGCGTTTGGCGTGTTGCCAGAAGGGCATACGTTAAGTGCGAAAGAGTGGAAACAGCTTTCGTccc > 1:2369278/1‑66 (MQ=255) aaGCGTTTGGCGTGTTGCCAGAAGGGCATACGTTAAGTGCGAAAGAGTGGAAACAGCTTTCGTCCCaa > 1:1110361/1‑68 (MQ=255) aaGCGTTTGGCGTGTTGCCAGAAGGGCATACGTTAAGTGCGAAAGAGTGGAAACAGCTTTCGTCCCaa > 1:677508/1‑68 (MQ=255) aaGCGTTTGGCGTGTTGCCAGAAGGGCATACGTTAAGTGCGAAAGAGTGGAAACAGCTTTCGTCCCAAt > 1:1294724/1‑69 (MQ=255) aaGCGTTTGGCGTGTTGCCAGAAGGGCATACGTTAAGTGCGAAAGAGTGGAAACAGCTTTCGTCCCAAt > 1:2323263/1‑69 (MQ=255) aaGCGTTTGGCGTGTTGCCAGAAGGGCATACGTTAAGTGCGAAAGAGTGGAAACAGCTTTCGTCCCAAt > 1:317927/1‑69 (MQ=255) aaGCGTTTGGCGTGTTGCCAGAAGGGCATACGTTAAGTGCGAAAGAGTGGAAACAGCTTTCGTCCCAAt > 1:3201774/1‑69 (MQ=255) aaGCGTTTGGCGTGTTGCCAGAAGGGCATACGTTAAGTGCGAAAGAGTGGAAACAGCTTTCGTCCCAAt > 1:3268746/1‑69 (MQ=255) aaGCGTTTGGCGTGTTGCCAGAAGGGCATACGTTAAGTGCGAAAGAGTGGAAACAGCTTTCGTCCCAAt > 1:2013236/1‑69 (MQ=255) aaGCGTTTGGCGTGTTGCCAGAAGGGCATACGTTAAGTGCGAAAGAGTGGAAACAGCTTTCGTCCCAAt > 1:1409512/1‑69 (MQ=255) aaGCGTTTGGCGTGTTGCCAGAAGGGCATACGTTAAGTGCGAAAGAGTGGAAACAGCTTTCGTCCCAAt > 1:3349528/1‑69 (MQ=255) aaGCGTTTGGCGTGTTGCCAGAAGGGCATACGTTAAGTGCGAAAGAGTGGAAACAGCTTTCGTCCCAAt > 1:1483544/1‑69 (MQ=255) aaGCGTTTGGCGTGTTGCCAGAAGGGCATACGTTAAGTGCGAAAGAGTGGAAACAGCTTTCGTCCCAAt > 1:126244/1‑69 (MQ=255) aaGCGTTTGGCGTGTTGCCAGAAGGGCATACGTTAAGTGCGAAAGAGTGGAAACAGCTTTCGTCCCAAt > 1:218984/1‑69 (MQ=255) aaGCGTTTGGCGTGTTGCCAGAAGGGCATACGTTAAGTGCGAAAGAGTGGAAACAGCTTTCGTCCCAAt > 1:1216933/1‑69 (MQ=255) aaGCGTTTGGCGTGTTGCCAGAAGGGCATACGTTAAGTGCGAAAGAGTGGAAACAGCTTTCGTCCCAAt > 1:468921/1‑69 (MQ=255) aaGCGTTTGGCCTGTTGCCAGAAGGGCATACGTTAAGTGCGAAAGAGTGGAAACAGCTTTCGTCCCAAt > 1:716418/1‑69 (MQ=255) aGCGTTTGGCGTGTTGCCCGAAGGGCATACGTTAAGTGCGAAAGAGTGGAAACAGCTTTCGTCCCAATg > 1:2705584/1‑69 (MQ=255) aGCGTTTGGCGTGTTGCCCGAAGGGCATACGTTAAGTGCGAAAGAGTGGAAACAGCTTTCGTCCCAATg > 1:1415457/1‑69 (MQ=255) aGCGTTTGGCGTGTTGCCCGAAGGGCATACGTTAAGTGCGAAAGAGTGGAAACAGCTTTCGTCCCAATg > 1:2404116/1‑69 (MQ=255) aGCGTTTGGCGTGTTGCCCGAAGGGCATACGTTAAGTGCGAAAGAGTGGAAACAGCTTTCGTCCCAATg > 1:1919047/1‑69 (MQ=255) aGCGTTTGGCGTGTTGCCCGAAGGGCATACGTTAAGTGCGAAAGAGTGGAAACAGCTTTCGTCCCAATg > 1:1521502/1‑69 (MQ=255) gCGTGTTGCCCGAAGGGCATACGTTAAGTGCGAAag < 1:1079073/36‑1 (MQ=255) gCCCGAAGGGCATACGTTAAGTTCGAAAGAGTGGAAACAGCTTTCGTCCCAATGGCGAGAAGAGTTgg < 1:786566/68‑1 (MQ=255) gCCCGAAGGGCATACGTTAAGTGCGAAAGAGTGGAAACAGCTTTCGTCCCAATGGCGAGAAGAGTTgg < 1:2110589/68‑1 (MQ=255) gCCCGAAGGGCATACGTTAAGTGCGAAAGAGTGGAAACAGCTTTCGTCCCAATGGCGAGAAGAGTTgg < 1:1466417/68‑1 (MQ=255) gCCCGAAGGGCATACGTTAAGTGCGAAAGAGTGGAAACAGCTTTCGTCCCAATGGCGAGAAGAGTTgg < 1:2584508/68‑1 (MQ=255) gCCCGAAGGGCATACGTTAAGTGCGAAAGAGTGGAAACAGCTTTCGTCCCAATGGCGAGAAGAGTTgg < 1:2064342/68‑1 (MQ=255) gCCCGAAGGGCATACGTTAAGTGCGAAAGAGTGGAAACAGCTTTCGTCCCAATGGCGAGAAGAGTTgg < 1:1894460/68‑1 (MQ=255) gCCCGAAGGGCATACGTTAAGTGCGAAAGAGTGGAAACAGCTTTCGTCCCAATGGCGAGAAGAGTTgg < 1:1720466/68‑1 (MQ=255) gCCCGAAGGGCATACGTTAAGTGCGAAAGAGTGGAAACAGCTTTCGTCCCAATGGCGAGAAGAGTTgg < 1:3116116/68‑1 (MQ=255) | TTATCAAAATTGCTCAGCGTATTGGCATTCCGCTGGCGACCATTGGTGAAGCGTTTGGCGTGTTGCCCGAAGGGCATACGTTAAGTGCGAAAGAGTGGAAACAGCTTTCGTCCCAATGGCGAGAAGAGTTGG > minE/2816518‑2816649 |
Alignment Legend |
---|
Aligned base mismatch/match (shaded by quality score): ATCG/ATCG < 3 ≤ ATCG/ATCG < 21 ≤ ATCG/ATCG < 32 ≤ ATCG/ATCG < 36 ≤ ATCG/ATCG |
Unaligned base: atcg Masked matching base: atcg Alignment gap: ‑ Deleted base: ‑ |