| Predicted mutation | |||||||
|---|---|---|---|---|---|---|---|
| evidence | seq id | position | mutation | freq | annotation | gene | description |
| RA | minE | 2,824,674 | T→C | 54.2% | L99L (CTA→CTG) | yjdC ← | predicted transcriptional regulator |
| Read alignment evidence... | |||||||||||
|---|---|---|---|---|---|---|---|---|---|---|---|
| seq id | position | ref | new | freq | score (cons/poly) | reads | annotation | genes | product | ||
| * | minE | 2,824,674 | 0 | T | C | 54.2% | ‑0.4 / 15.7 | 24 | L99L (CTA→CTG) | yjdC | predicted transcriptional regulator |
| Reads supporting (aligned to +/- strand): ref base T (9/2); new base C (8/5); total (17/7) | |||||||||||
| Fisher's exact test for biased strand distribution p-value = 3.86e-01 | |||||||||||
| Kolmogorov-Smirnov test that lower quality scores support variant p-value = 1.00e+00 | |||||||||||
GGCCAGGATCGGGATAAAACGTACAGGCAGCGATAAATAGACAGCCCGGATAGCGGTTGTTTTTAACGCACTCCGATAACGCCTGATAACGT > minE/2824637‑2824728 | ggCCATGATCGGGGTAAAACGTACAGGCAGCGATAAACAGACAGCCCGGATAg < 1:485893/53‑1 (MQ=255)ggCCAGGATCGGGGTAAAACGTACAGGCAGCGATAAACAGACAGCCCGGATAg < 1:312814/53‑1 (MQ=255)ggCCAGGATCGGGGTAAAACGTACAGGCAGCGATAAACAGACAGCCCGGATAg < 1:118020/53‑1 (MQ=255)ggCCAGGATCGGGGTAAAACGTACAGGCAGCGATAAACAGACAGCCCGGATAg < 1:2574662/53‑1 (MQ=255) gCCAGGATCGGGGTAAAACGTACAGGCAGCGATAAACAGACAGCCCGGATAg < 1:552399/52‑1 (MQ=255) gCCAGGATCGGGATAAAACGTACAGGCAGCGATAAATAGACAGCCCGGATAGCGGTTGTTTTTAACGCa < 1:756419/69‑1 (MQ=255) tCGGGATAAAACGTACAGGCAGCGATAAATAGACAGCCCGGATAGCGGTTGTTTTTAACGCACTCCGAt < 1:3070091/69‑1 (MQ=255) aaaCGTACAGGCAGCGATAAATAGACAGCCCGGATAGCGGTTGTTTTTAACGCACTCCGATATCGCCt > 1:426712/1‑68 (MQ=255) aaaCGTACAGGCAGCGATAAATAGACAGCCCGGATAGCGGTTGTTTTTAACGCACTCCGATAACGCCt > 1:562665/1‑68 (MQ=255) aaaCGTACAGGCAGCGATAAATAGACAGCCCGGATAGCGGTTGTTTTTAACGCACTCCGATAACGCCt > 1:1979558/1‑68 (MQ=255) aaaCGTACAGGCAGCGATAAATAGACAGCCCGGATAGCGGTTGTTTTTAACGCACTCCGATAACGCCt > 1:2874395/1‑68 (MQ=255) aaaCGTACAGGCAGCGATAAATAGACAGCCCGGATAGCGGTTGTTTTTAACGCACTCCGATAACGCCt > 1:539017/1‑68 (MQ=255) aaaCGTACAGGCAGCGATAAATAGACAGCCCGGATAGCGGTTGTTTTTAACGCACTCCGATAACGCCt > 1:502724/1‑68 (MQ=255) aaaCGTACAGGCAGCGATAAATAGACAGCCCGGATAGCGGTTGTTTTTAACGCACTCCGATAACGCCt > 1:2005628/1‑68 (MQ=255) aaaCGTACAGGCAGCGATAAATAGACAGCCCGGATAGCGGTTGTTTTTAACGCACTCCGATAACGCCt > 1:270601/1‑68 (MQ=255) aaaCGTACAGGCACCGATAAATAGACAGCCCGGATAGCGGTTGTTTTTAACGCACTCCGATAACGCCt > 1:1415558/1‑68 (MQ=255) cAGGCAGCGATAAACAGACAGCCCGGATAGCGGTTGTTTTTAACGCACTCCGATAACGCCTGATAAc > 1:3393970/1‑67 (MQ=255) cAGGCAGCGATAAACAGACAGCCCGGATAGCGGTTGTTTTTAACGCACTCCGATAACGCCTGATAACGt > 1:3356785/1‑69 (MQ=255) cAGGCAGCGATAAACAGACAGCCCGGATAGCGGTTGTTTTTAACGCACTCCGATAACGCCTGATAACGt > 1:3146320/1‑69 (MQ=255) cAGGCAGCGATAAACAGACAGCCCGGATAGCGGTTGTTTTTAACGCACTCCGATAACGCCTGATAACGt > 1:2067399/1‑69 (MQ=255) cAGGCAGCGATAAACAGACAGCCCGGATAGCGGTTGTTTTTAACGCACTCCGATAACGCCTGATAACGt > 1:2567124/1‑69 (MQ=255) cAGGCAGCGATAAACAGACAGCCCGGATAGCGGTTGTTTTTAACGCACTCCGATAACGCCTGATAACGt > 1:2857700/1‑69 (MQ=255) cAGGCAGCGATAAACAGACAGCCCGGATAGCGGTTGTTTTTAACGCACTCCGATAACGCCTGATAACGt > 1:2759985/1‑69 (MQ=255) cAGGCAGCGATAAACAGACAGCCCGGATAGCGGTTGTTTTTAACGCACTCCGATAACGCCTGATAACGt > 1:2722641/1‑69 (MQ=255) | GGCCAGGATCGGGATAAAACGTACAGGCAGCGATAAATAGACAGCCCGGATAGCGGTTGTTTTTAACGCACTCCGATAACGCCTGATAACGT > minE/2824637‑2824728 |
| Alignment Legend |
|---|
Aligned base mismatch/match (shaded by quality score): ATCG/ATCG < 3 ≤ ATCG/ATCG < 14 ≤ ATCG/ATCG < 32 ≤ ATCG/ATCG < 36 ≤ ATCG/ATCG |
Unaligned base: atcg Masked matching base: atcg Alignment gap: ‑ Deleted base: ‑ |