| Predicted mutation | |||||||
|---|---|---|---|---|---|---|---|
| evidence | seq id | position | mutation | freq | annotation | gene | description |
| RA | minE | 2,827,078 | G→A | 28.2% | intergenic (‑60/+56) | cutA ← / ← dcuA | copper binding protein, copper sensitivity/C4‑dicarboxylate antiporter |
| Read alignment evidence... | |||||||||||
|---|---|---|---|---|---|---|---|---|---|---|---|
| seq id | position | ref | new | freq | score (cons/poly) | reads | annotation | genes | product | ||
| * | minE | 2,827,078 | 0 | G | A | 28.2% | 54.8 / 19.4 | 53 | intergenic (‑60/+56) | cutA/dcuA | copper binding protein, copper sensitivity/C4‑dicarboxylate antiporter |
| Reads supporting (aligned to +/- strand): ref base G (10/28); new base A (10/5); total (20/33) | |||||||||||
| Fisher's exact test for biased strand distribution p-value = 1.10e-02 | |||||||||||
| Kolmogorov-Smirnov test that lower quality scores support variant p-value = 5.85e-01 | |||||||||||
AAGCATAAACACCTCGCAAGAACAGATGGAACCGCAAGAGAGAGGTCACTATACAACGGACGGGGGAAGGATGTTAGTCGGCGGGAAAGAAAGCGGGGCGTGAACGCCCCGCGATTGATCATTACAG > minE/2827013‑2827139 | aaGCATAAACACCTCGCAAGAACAGATGGAACCGCAAGAGAGAGGTCACTATACAACGGACGGGGGAAg < 1:2685061/69‑1 (MQ=255)aaGCATAAACACCTCGCAAGAACAGATGGAACCGCAAGAGAGAGGTCACTATACAACGGACGGGGGAAg < 1:463048/69‑1 (MQ=255)aaGCATAAACACCTCGCAAGAACAGATGGAACCGCAAGAGAGAGGTCACTATACAACGGACGGGGGAAg < 1:460477/69‑1 (MQ=255)aaGCATAAACACCTCGCAAGAACAGATGGAACCGCAAGAGAGAGGTCACTATACAACGGACGGGGGAAg < 1:1441705/69‑1 (MQ=255)aaGCATAAACACCTCGCAAGAACAGATGGAACCGCAAGAGAGAGGTCACTATACAACGGACGGGGGAAg < 1:2240401/69‑1 (MQ=255)aaGCATAAACACCTCGCAAGAACAGATGGAACCGCAAGAGAGAGGTCACTATACAACGGACGGGGGAAg < 1:422090/69‑1 (MQ=255)aaGCATAAACACCTCGCAAGAACAGATGGAACCGCAAGAGAGAGGTCACTATACAACGGACGGGGGAAg < 1:2454026/69‑1 (MQ=255) gCATAAATACCTCGCAAGAACAGATGGAACCGCAAGAGAGAGGTCACTATACAACGGACGGGGGAAgg < 1:1922428/68‑1 (MQ=255) gCATAAACACCTCGCAAGAACAGATGGAACCGCAAGAGTGAGGTCACTATACAACGGACGGGGGAAgg < 1:465936/68‑1 (MQ=255) gCATAAACACCTCGCAAGAACAGATGGAACCGCAAGAGAGAGGTCACTATACAACGGACGGGGGAAgg < 1:2494366/68‑1 (MQ=255) gCATAAACACCTCGCAAGAACAGATGGAACCGCAAGAGAGAGGTCACTATACAACGGACGGGGGAAgg < 1:264116/68‑1 (MQ=255) gCATAAACACCTCGCAAGAACAGATGGAACCGCAAGAGAGAGGTCACTATACAACGGACGGGGGAAgg < 1:418747/68‑1 (MQ=255) cATAAACACCTCGCAAGAACAGATGGAACCGCAAGAGAGAGGTCACTATACAACGGACGGGGGAAgg < 1:2229390/67‑1 (MQ=255) aaCACCTCGCAAGAACAGATGGAACCGCAAGAGAGAGGTCACTATACAACGGACGGGGGAAGGATGTTa > 1:3254811/1‑69 (MQ=255) aaCACCTCGCAAGAACAGATGGAACCGCAAGAGAGAGGTCACTATACAACGGACGGGGGAAGGATGTTa > 1:518027/1‑69 (MQ=255) aaCACCTCGCAAGAACAGATGGAACCGCAAGAGAGAGGTCACTATACAACGGACGGGGGAAGGATGTTa > 1:2411033/1‑69 (MQ=255) aaCACCTCGCAAGAACAGATGGAACCGCAAGAGAGA‑GTCACTATACAACGGACGGGGGAAGGATGTTAg > 1:2424705/1‑69 (MQ=255) aGATGGAACCGCAAGAGAGAGGTCACTATACAACGGACGGGGAAAg > 1:409343/1‑46 (MQ=255) aGATGGAACCGCAAGAGAGAGGTCACTATACAACGGACGGGGAAAg > 1:2791993/1‑46 (MQ=255) aGATGGAACCGCAAGAGAGAGGTCACTATACAACGGACGGGGAAAg > 1:937695/1‑46 (MQ=255) aGATGGAACCGCAAGAGAGAGGTCACTATACAACGGACGGGGAAAg > 1:437604/1‑46 (MQ=255) aGATGGAACCGCAAGAGAGAGGTCACTATACAACGGACGGGGAAAg > 1:474003/1‑46 (MQ=255) aGATGGAACCGCAAGAGAGAGGTCACTATACAACGGACGGGGAAAg > 1:922599/1‑46 (MQ=255) aGATGGAACCGCAAGAGAGAGGTCACTATACAACGGACGGGGAAAg > 1:1141970/1‑46 (MQ=255) aGATGGAACCGCAAGAGAGAGGTCACTATACAACGGACGGGGAAAg > 1:1301787/1‑46 (MQ=255) aGATGGAACCGCAAGAGAGAGGTCACTATACAACGGACGGGGAAAg > 1:133351/1‑46 (MQ=255) aGATGGAACCGCAAGAGAGAGGTCACTATACAACGGACGGGGAAAg > 1:1798610/1‑46 (MQ=255) tGGAACCGCAAGAGAGAGGTCACTATACAACGGACGGGGAAAGGATGTTa < 1:2301961/50‑1 (MQ=255) tGGAACCGCAAGAGAGAGGTCACTATACAACGGACGGGGAAAGGATGTTa < 1:1050589/50‑1 (MQ=255) tGGAACCGCAAGAGAGAGGTCACTATACAACGGACGGGGAAAGGATGTTa < 1:2730275/50‑1 (MQ=255) tGGAACCGCAAGAGAGAGGTCACTATACAACGGACGGGGAAAGGATGTTa < 1:157749/50‑1 (MQ=255) tGGAACCGCAAGAGAGAGGTCACTATACAACGGACGGGGAAAGGATGTTa < 1:1793003/50‑1 (MQ=255) ggAACCGCAAGAGAGAGGTCACTATACAACGGACGGGGGAAgg < 1:1339661/43‑1 (MQ=255) ccGCAAGAGAGAGGTCACTATACAACGGACGGGGGAAGGATGTTAGTCGGCGGGAAAGAAAGCGGGGCg < 1:1837614/69‑1 (MQ=255) ccGCAAGAGAGAGGTCACTATACAACGGACGGGGGAAGGATGTTAGTCGGCGGGAAAGAAAGCGGGGCg < 1:436532/69‑1 (MQ=255) ccGCAAGAGAGAGGTCACTATACAACGGACGGGGGAAGGATGTTAGTCGGCCGGAAAGAAAGCGGGGCg < 1:3307613/69‑1 (MQ=255) gCAAGAGAGAGGTCACTATACAACGGACGGGGGAAGGATGTTAGTCGGCGGGAAAGAAAGCGGGGCGTg < 1:2073600/69‑1 (MQ=255) gCAAGAGAGAGGTCACTATACAACGGACGGGGGAAGGATGTTAGTCGGCGGGAAAGAAAGCGGGGCGTg < 1:294607/69‑1 (MQ=255) tCACTATACAACGGACGGGGGAAGGATGTTAGTCGGCGGGAAAGAAAGCGGGGCGTGAACGCCCCGCGa < 1:1988439/69‑1 (MQ=255) cACTATACAACGGACGGGGGAAGGATGTTAGTCGGCGGGAAAGAAAGCGGGGCGTGAAGGCCCCGCGa > 1:2956562/1‑68 (MQ=255) cACTATACAACGGACGGGGGAAGGATGTTAGTCGGCGGGAAAGAAAGCGGGGCGTGAACGCCCCGCGa > 1:3384253/1‑68 (MQ=255) cACTATACAACGGACGGGGGAAGGATGTTAGTCGGCGGGAAAGAAAGCGGGGCGTGAACGCCCCGCGa > 1:2823912/1‑68 (MQ=255) cACTATACAACGGACGGGGGAAGGATGTTAGTCGGCGGGAAAGAAAGCGGGGCGTGAACGCCCCGCGa < 1:273794/68‑1 (MQ=255) cACTATACAACGGACGGGGGAAGGATGTTAGTCGGCGGGAAAGAAAGCGGGGCGTGAACGCCCCGCGa > 1:1892497/1‑68 (MQ=255) aCTATACAACGGACGGGGGAAGGATGTTAGTCGGCGGGAAAGAAAGCGGGGCGTGAACGCCCCGCGAtt > 1:1180575/1‑69 (MQ=255) aCTATACAACGGACGGGGGAAGGATGTTAGTCGGCGGGAAAGAAAGCGGGGCGTGAACGCCCCGCGAtt > 1:1152129/1‑69 (MQ=255) tataCAACGGACGGGGGAAGGATGTTAGTCGGCGGGAAAGAAAGCGGGGCGTGAACGCCCCGCGATTg < 1:2973109/68‑1 (MQ=255) tataCAACGGACGGGGGAAGGATGTTAGTCGGCGGGAAAGAAAGCGGGGCGTGAACGCCCCGCGATTg < 1:201300/68‑1 (MQ=255) cggccggGGGAAGGATGTTAGTCGGCGGGAAAGAACGCGGGGCGTGAACGCCCCGCGATTg < 1:3235957/61‑1 (MQ=255) gacggGGGAAGGATGTTAGTCGGCGGGAAAGAAAGCGGGGCGTGAACGCCCCGCGATTGATCATTACAg < 1:1824026/69‑1 (MQ=255) gacggGGGAAGGATGTTAGTCGGCGGGAAAGAAAGCGGGGCGTGAACGCCCCGCGATTGATCATTACAg < 1:1466991/69‑1 (MQ=255) acggGGGAAGGATGTTAGTCGGCGGGAAAGAAAGCGGGGCGTGAACGCCCCGCGATTGATCATTACAg < 1:3405454/68‑1 (MQ=255) acggGGGAAGGATGTTAGTCGGCGGGAAAGAAAGCGGGGCGTGAACGCCCCGCGATTGATCATTACAg < 1:552107/68‑1 (MQ=255) | AAGCATAAACACCTCGCAAGAACAGATGGAACCGCAAGAGAGAGGTCACTATACAACGGACGGGGGAAGGATGTTAGTCGGCGGGAAAGAAAGCGGGGCGTGAACGCCCCGCGATTGATCATTACAG > minE/2827013‑2827139 |
| Alignment Legend |
|---|
Aligned base mismatch/match (shaded by quality score): ATCG/ATCG < 3 ≤ ATCG/ATCG < 14 ≤ ATCG/ATCG < 32 ≤ ATCG/ATCG < 36 ≤ ATCG/ATCG |
Unaligned base: atcg Masked matching base: atcg Alignment gap: ‑ Deleted base: ‑ |