| Predicted mutation | |||||||
|---|---|---|---|---|---|---|---|
| evidence | seq id | position | mutation | freq | annotation | gene | description |
| RA | minE | 2,832,168 | T→A | 47.5% | intergenic (‑94/‑182) | yjeH ← / → groS | predicted transporter/Cpn10 chaperonin GroES, small subunit of GroESL |
| Read alignment evidence... | |||||||||||
|---|---|---|---|---|---|---|---|---|---|---|---|
| seq id | position | ref | new | freq | score (cons/poly) | reads | annotation | genes | product | ||
| * | minE | 2,832,168 | 0 | T | A | 47.5% | 3.2 / 71.5 | 61 | intergenic (‑94/‑182) | yjeH/groS | predicted transporter/Cpn10 chaperonin GroES, small subunit of GroESL |
| Reads supporting (aligned to +/- strand): ref base T (20/12); new base A (15/14); total (35/26) | |||||||||||
| Fisher's exact test for biased strand distribution p-value = 4.45e-01 | |||||||||||
| Kolmogorov-Smirnov test that lower quality scores support variant p-value = 1.00e+00 | |||||||||||
GTAGCACAATCAGATTCGCTTATGACGGCGATGAAGAAATTGCGATGAAATGTGAGGTGAATCAGGGTTTTCACCCGATTTTGTGCTGATCAGAATTTTTTTTCT > minE/2832128‑2832232 | gTAGCACAATCAGATTCGCTTATGACGGCGATGAAGAAATTGCGATGaaa < 1:440754/50‑1 (MQ=255)gTAGCACAATCAGATTCGCTTATGACGGCGATGAAGAAATTGCGATGaaa < 1:1976005/50‑1 (MQ=255)gTAGCACAATCAGATTCGCTTATGACGGCGATGAAGAAATTGCGATGaaa < 1:3032788/50‑1 (MQ=255)gTAGCACAATCAGATTCGCTTATGACGGCGATGAAGAAATTGCGATGaaa < 1:1177166/50‑1 (MQ=255)gTAGCACAATCAGATTCGCTTATGACGGCGATGAAGAAATTGCGATGaaa < 1:2885413/50‑1 (MQ=255)gTAGCACAATCAGATTCGCTTATGACGGCGATGAAGAAATTGCGATGaaa < 1:515396/50‑1 (MQ=255)gTAGCACAATCAGATTCGCTTATGACGGCGATGAAGAAATTGCGATGaaa < 1:2045724/50‑1 (MQ=255)gTAGCACAATCAGATTCGCTTATGACGGCGATGAAGAAATTGCGATGaaa < 1:2147813/50‑1 (MQ=255)gTAGCACAATCAGATTCGCTTATGACGGCGATGAAGAAATTGCGATGaaa < 1:891190/50‑1 (MQ=255)gTAGCACAATCAGATTCGCTTATGACGGCGATGAAGAAATTGCGATGaaa < 1:553746/50‑1 (MQ=255)gTAGCACAATCAGATTCGCTTATGACGGCGATGAAGAAATTGCGATGaaa < 1:2267007/50‑1 (MQ=255)gTAGCACAATCAGATTCGCTTATGACGGCGATGAAGAAATTGCGATGaaa < 1:2183915/50‑1 (MQ=255) acaATCAGATTCGCTTATGACGGCGATGAAGAAATTGCGATGAAATGTGAGGt > 1:2342474/1‑53 (MQ=255) acaATCAGATTCGCTTATGACGGCGATGAAGAAATTGCGATGAAATGTGAGGTg > 1:2410930/1‑54 (MQ=255) acaATCAGATTCGCTTATGACGGCGATGAAGAAATTGCGATGAAATGTGAGGTg > 1:2019314/1‑54 (MQ=255) acaATCAGATTCGCTTATGACGGCGATGAAGAAATTGCGATGAAATGTGAGGTg > 1:2221464/1‑54 (MQ=255) acaATCAGATTCGCTTATGACGGCGATGAAGAAATTGCGATGAAATGTGAGGTg > 1:2585921/1‑54 (MQ=255) acaATCAGATTCGCTTATGACGGCGATGAAGAAATTGCGATGAAATGTGAGGTg > 1:329319/1‑54 (MQ=255) acaATCAGATTCGCTTATGACGGCGATGAAGAAATTGCGATGAAATGTGAGGTg > 1:427510/1‑54 (MQ=255) acaATCAGATTCGCTTATGACGGCGATGAAGAAATTGCGATGAAATGTGAGGTg > 1:1927638/1‑54 (MQ=255) acaATCAGATTCGCTTATGACGGCGATGAAGAAATTGCGATGAAATGTGAGGTg > 1:182637/1‑54 (MQ=255) acaATCAGATTCGCTTATGACGGCGATGAAGAAATTGCGATGAAATGTGAGGTg > 1:668011/1‑54 (MQ=255) acaATCAGATTCGCTTATGACGGCGATGAAGAAATTGCGATGAAATGTGAGGTg > 1:921099/1‑54 (MQ=255) acaATCAGATTCGCTTATGACGGCGATGAAGAAATTGCGATGAAATGTGAGGTg > 1:808368/1‑54 (MQ=255) acaATCAGATTCGCTTATGACGGCGATGAAGAAATTGCGATGAAATGTGAGGTg > 1:891566/1‑54 (MQ=255) acaATCAGATTCGCTTATGACGGCGATGAAGAAATTGCGATGAAATGTGAGGTg > 1:1676395/1‑54 (MQ=255) gtgATGAAGAAATAGCGATGAAATGTGAGGTGAATCAGGGTTTTCACCCGATTTTGTGCTGATCAGaa > 1:2646810/3‑68 (MQ=255) gtgATGAAGAAATAGCGATGAAATGTGAGGTGAATCAGGGTTTTCACCCGATTTTGTGCTGATCAGAAt > 1:1023589/3‑69 (MQ=255) gtgATGAAGAAATAGCGATGAAATGTGAGGTGAATCAGGGTTTTCACCCGATTTTGTGCTGATCAGAAt > 1:3415329/3‑69 (MQ=255) gtgATGAAGAAATAGCGATGAAATGTGAGGTGAATCAGGGTTTTCACCCGATTTTGTGCTGATCAGAAt > 1:1104689/3‑69 (MQ=255) gtgATGAAGAAATAGCGATGAAATGTGAGGTGAATCAGGGTTTTCACCCGATTTTGTGCTGATCAGAAt > 1:484666/3‑69 (MQ=255) gtgATGAAGAAATAGCGATGAAATGTGAGGTGAATCAGGGTTTTCACCCGATTTTGTGCTGATCAGAAt > 1:3227657/3‑69 (MQ=255) gtgATGAAGAAATAGCGATGAAATGTGAGGTGAATCAGGGTTTTCACCCGATTTTGTGCTGATCAGAAt > 1:3063425/3‑69 (MQ=255) gtgATGAAGAAATAGCGATGAAATGTGAGGTGAATCAGGGTTTTCACCCGATTTTGTGCTGATCAGAAt > 1:1299479/3‑69 (MQ=255) gtgATGAAGAAATAGCGATGAAATGTGAGGTGAATCAGGGTTTTCACCCGATTTTGTGCTGATCAGAAt > 1:2799098/3‑69 (MQ=255) gtgATGAAGAAATAGCGATGAAATGTGAGGTGAATCAGGGTTTTCACCCGATTTTGTGCTGATCAGAAt > 1:267782/3‑69 (MQ=255) gtgATGAAGAAATAGCGATGAAATGTGAGGTGAATCAGGGTTTTCACCCGATTTTGTGCTGATCAGAAt > 1:1564824/3‑69 (MQ=255) gtgATGAAGAAATAGCGATGAAATGTGAGGTGAATCAGGGTTTTCACCCGATTTTGTGCTGATCAGAAt > 1:2391406/3‑69 (MQ=255) gtgATGAAGAAATAGCGATGAAATGTGAGGTGAATCAGGGTTTTCACCCGATTTTGTGCTGATCAGAAt > 1:2361402/3‑69 (MQ=255) gtgATGAAGAAATAGCGATGAAATGTGAGGTGAATCAGGGTTTTCACCCGATTTTGTGCTGATCAGAAt > 1:2269275/3‑69 (MQ=255) gtgATGAAGAAATAGCGATGAAATGTGAGGTGAATCAGGGTTTTCACCCGATTTTGTGCTGATCAGAAt > 1:1934275/3‑69 (MQ=255) gaagaaATTGCGATGAAATGTGAGGTGAATCAGGGTTTTCACCCGATTTTGTGCTGATCAGAAtttttt > 1:2675993/1‑69 (MQ=255) gaagaaATTGCGATGAAATGTGAGGTGAATCAGGGTTTTCACCCGATTTTGTGCTGATCAGAAtttttt > 1:1803363/1‑69 (MQ=255) gaagaaATTGCGATGAAATGTGAGGTGAATCAGGGTTTTCACCCGATTTTGTGCTGATCAGAAttttt > 1:633924/1‑68 (MQ=255) gaagaaATTCCGATGAAATGTGAGGTGAATCAGGGTTTTCACCCGATTTTGTGCTGATCAGAAttttt > 1:1550129/1‑68 (MQ=255) aagaaATTGCGATGAAATGTGAGGTGAATCAGGGtttt > 1:1989984/1‑38 (MQ=255) aagaaATTGCGATGAAATGTGAGGTGAATCAGGGTTTTCACCCGATTTTGTGCTGATCAGAAttttttt > 1:502768/1‑69 (MQ=255) aaaTAGCGATGAAATGTGAGGTGAATCAGGGTTTTCACCCGATTTTGTGCTGATCAGAATTTtttttct < 1:973764/69‑1 (MQ=255) aaaTAGCGATGAAATGTGAGGTGAATCAGGGTTTTCACCCGATTTTGTGCTGATCAGAATTTtttttct < 1:3428065/69‑1 (MQ=255) aaaTAGCGATGAAATGTGAGGTGAATCAGGGTTTTCACCCGATTTTGTGCTGATCAGAATTTtttttct < 1:3394286/69‑1 (MQ=255) aaaTAGCGATGAAATGTGAGGTGAATCAGGGTTTTCACCCGATTTTGTGCTGATCAGAATTTtttttct < 1:3345237/69‑1 (MQ=255) aaaTAGCGATGAAATGTGAGGTGAATCAGGGTTTTCACCCGATTTTGTGCTGATCAGAATTTtttttct < 1:2922021/69‑1 (MQ=255) aaaTAGCGATGAAATGTGAGGTGAATCAGGGTTTTCACCCGATTTTGTGCTGATCAGAATTTtttttct < 1:2773027/69‑1 (MQ=255) aaaTAGCGATGAAATGTGAGGTGAATCAGGGTTTTCACCCGATTTTGTGCTGATCAGAATTTtttttct < 1:2287437/69‑1 (MQ=255) aaaTAGCGATGAAATGTGAGGTGAATCAGGGTTTTCACCCGATTTTGTGCTGATCAGAATTTtttttct < 1:2166882/69‑1 (MQ=255) aaaTAGCGATGAAATGTGAGGTGAATCAGGGTTTTCACCCGATTTTGTGCTGATCAGAATTTtttttct < 1:1707271/69‑1 (MQ=255) aaaTAGCGATGAAATGTGAGGTGAATCAGGGTTTTCACCCGATTTTGTGCTGATCAGAATTTtttttct < 1:16924/69‑1 (MQ=255) aaaTAGCGATGAAATGTGAGGTGAATCAGGGTTTTCACCCGATTTTGTGCTGATCAGAATTTtttttct < 1:1172457/69‑1 (MQ=255) aaaTAGCGATGAAATGTGAGGTGAATCAGGGTTTTCACCCGATTTTGTGCTGATCAGAATTTtttttct < 1:1143572/69‑1 (MQ=255) aaaTAGCGATGAAATGTGAGGTGAATCAGGGTTTTCACCCGATTTTGTGCTGATCAGAATTTtttttct < 1:1050129/69‑1 (MQ=255) aaaTAGCGATGAAATGGGAGGTGAATCAGGGTTTTCACCCGATTTTGTGCTGATCAGAATTTtttttct < 1:1817250/69‑1 (MQ=255) | GTAGCACAATCAGATTCGCTTATGACGGCGATGAAGAAATTGCGATGAAATGTGAGGTGAATCAGGGTTTTCACCCGATTTTGTGCTGATCAGAATTTTTTTTCT > minE/2832128‑2832232 |
| Alignment Legend |
|---|
Aligned base mismatch/match (shaded by quality score): ATCG/ATCG < 3 ≤ ATCG/ATCG < 21 ≤ ATCG/ATCG < 32 ≤ ATCG/ATCG < 36 ≤ ATCG/ATCG |
Unaligned base: atcg Masked matching base: atcg Alignment gap: ‑ Deleted base: ‑ |