| Predicted mutation | |||||||
|---|---|---|---|---|---|---|---|
| evidence | seq id | position | mutation | freq | annotation | gene | description |
| RA | minE | 2,864,086 | C→T | 32.8% | I129I (ATC→ATT) | hflK → | modulator for HflB protease specific for phage lambda cII repressor |
| Read alignment evidence... | |||||||||||
|---|---|---|---|---|---|---|---|---|---|---|---|
| seq id | position | ref | new | freq | score (cons/poly) | reads | annotation | genes | product | ||
| * | minE | 2,864,086 | 0 | C | T | 32.8% | 65.9 / 40.3 | 79 | I129I (ATC→ATT) | hflK | modulator for HflB protease specific for phage lambda cII repressor |
| Reads supporting (aligned to +/- strand): ref base C (29/24); new base T (6/20); total (35/44) | |||||||||||
| Fisher's exact test for biased strand distribution p-value = 8.91e-03 | |||||||||||
| Kolmogorov-Smirnov test that lower quality scores support variant p-value = 8.20e-01 | |||||||||||
CGCTTTGGTAAATTCAGCCATCTGGTTGAGCCGGGTCTGAACTGGAAACCGACGTTTATCGACGAAGTCAAACCGGTGAACGTGGAAGCCGTGCGTGAACTGGCCGCTTCTGGTGTGATGCTG > minE/2864027‑2864149 | cGCTTTGGTAAATTCAGCCATCTGGTTGAGCCGGGTCTGAACTGGAAACCGACGTTTATCGACGAAGt > 1:870967/1‑68 (MQ=255)cGCTTTGGTAAATTCAGCCATCTGGTTGAGCCGGGTCTGAACTGGAAACCGACGTTTATCGACGAAGt > 1:775389/1‑68 (MQ=255)cGCTTTGGTAAATTCAGCCATCTGGTTGAGCCGGGTCTGAACTGGAAACCGACGTTTATCGACGAAGt > 1:3063586/1‑68 (MQ=255)cGCTTTGGTAAATTCAGCCATCTGGTTGAGCCGGGTCTGAACTGGAAACCGACGTTTATCGACGAAGt > 1:172016/1‑68 (MQ=255)cGCTTTGGTAAATTCAGCCATCTGGTTGAGCCGGGTCTGAACTGGAAACCGACGTTTATCGACGAAGt > 1:537445/1‑68 (MQ=255)cGCTTTGGTAAATTCAGCCATCTGGTTGAGCCGGGTCTGAACTCGAAACCGACGTTTATCGACGAAGt > 1:2789333/1‑68 (MQ=255)cGCTTTGGTAAATTCAGCCATCTGGTTGAGCCGGGTCTGAACCGGAAACCGACGTTTATCGACGAAGt > 1:2398421/1‑68 (MQ=255) gCTTTGGTAAATTCAGCCATCTGGTTGAGCCGGGTCTGAACTGGAAACCGACGTTTATCGACGAAGTCa < 1:2369062/69‑1 (MQ=255) gCTTTGGTAAATTCAGCCATCTGGTTGAGCCGGGTCTGAACTGGAAACCGACGTTTATCGACGAAGTCa < 1:2318568/69‑1 (MQ=255) gCTTTGGTAAATTCAGCCATCTGGTTGAGCCGGGTCTGAACTGGAAACCGACGTTTATCGACGAAGTCa < 1:1079286/69‑1 (MQ=255) cTTTGGTAAATTCAGCCATCTGGTTGAGCCGGGTCTGAACTGGAAACCGACGTTTATCGACGAAGTCaa < 1:1090847/69‑1 (MQ=255) cTTTGGTAAATTCAGCCATCTGGTTGAGCCGGGTCTGAACTGGAAACCGACGTTTATCGACGAAGTCaa < 1:1654080/69‑1 (MQ=255) cTTTGGTAAATTCAGCCATCTGGTTGAGCCGGGTCTGAACTGGAAACCGACGTTTATCGACGAAGTCaa < 1:161207/69‑1 (MQ=255) cTTTGGTAAATTCAGCCATCTGGTTGAGCCGGGTCTGAACTGGAAACCGACGTTTATCGACGAAGTCaa < 1:1264161/69‑1 (MQ=255) cTTTGGTAAATTCAGCCATCTGGTTGAGCCGGGTCTGAACTGGAAACCGACGTTTATCGACGAAGTCa < 1:2372852/68‑1 (MQ=255) ttGGTAAATTCAGCCATCTGGTTGAGCCGGGTCTGAACTGGAAACCGACGTTTATCGACGAAGTCAAAc < 1:3215330/69‑1 (MQ=255) ttGGTAAATTCAGCCATCTGGTTGAGCCGGGTCTGAACTGGAAACCGACGTTTATCGACGAAGTCAAAc < 1:96197/69‑1 (MQ=255) ttGGTAAATTCAGCCATCTGGTTGAGCCGGGTCTGAACTGGAAACCGACGTTTATCGACGAAGTCAAAc < 1:1200428/69‑1 (MQ=255) ttGGTAAATTCAGCCATCTGGTTGAGCCGGGTCTGAACTGGAAACCGACGTTTATCGACGAAGTCAAAc < 1:2889108/69‑1 (MQ=255) ttGGTAAATTCAGCCATCTGGTTGAGCCGGGTCTGAACTGGAAACCGACGTTTATCGACGAAGTCAAAc < 1:456471/69‑1 (MQ=255) ttGGTAAATTCAGCCATCTGGTTGAGCCGGGTCTGAACTGGAAACCGACGTTTATCGACGAAGTCAAAc < 1:3318094/69‑1 (MQ=255) gCCATCTGGTTGAGCCGGGTCTGAACTGGAAACCGACGTTTATCGACGAAGTCAAACCGGTGAACGTg < 1:1523831/68‑1 (MQ=255) tCTGGTTGAGCCGGGTCTGAACTGGAAACCGACGTTTATTGACGAAGTCAAACCGGTGAACGTGGAAGc > 1:1937566/1‑69 (MQ=255) tCTGGTTGAGCCGGGTCTGAACTGGAAACCGACGTTTATTGACGAAGTCAAACCGGTGAACGTGGAAGc > 1:732034/1‑69 (MQ=255) tCTGGTTGAGCCGGGTCTGAACTGGAAACCGACGTTTATTGACGAAGTCAAACCGGTGAACGTGGAAGc > 1:1429835/1‑69 (MQ=255) tCTGGTTGAGCCGGGTCTGAACTGGAAACCGACGTTTATTGACGAAGTCAAACCGGTGAACGTGGAAGc > 1:2085234/1‑69 (MQ=255) tCTGGTTGAGCCGGGTCTGAACTGGAAACCGACGTTTATTGACGAAGTCAAACCGGTGAACGTGGAAGc > 1:1252369/1‑69 (MQ=255) tCTGGTTGAGCCGGGTCTGAACTGGAAACCGACGTTTATTGACGAAGTCAAACCGGTGAACGTGGAAGc > 1:149741/1‑69 (MQ=255) tGGTTGAGCCGGGTCTGAACTGTAAACCGACGTTTATcgacg < 1:758266/42‑1 (MQ=255) tGGTTGAGCCGGGTCTGAACTGGAAACCGACGTTTATcgacg > 1:3387752/1‑42 (MQ=255) tGGTTGAGCCGGGTCTGAACTGGAAACCGACGTTTATcgacg > 1:2991003/1‑42 (MQ=255) tGGTTGAGCCGGGTCTGAACTGGAAACCGACGTTTATcgacg > 1:498663/1‑42 (MQ=255) tGGTTGAGCCGGGTCTGAACTGGAAACCGACGTTTATcgacg > 1:411717/1‑42 (MQ=255) tGGTTGAGCCGGGTCTGAACTGGAAACCGACGTTTATCGACGAAGTCAAACCGGTGAACGTGGAAgt > 1:2806769/1‑66 (MQ=255) tGGTTGAGCCGGGTCTGAACTGGAAACCGACGTTTATCGACGAAGTCAAACCGGTGAACGTGGAAg > 1:2925939/1‑66 (MQ=255) tGGTTGAGCCGGGTCTGAACTGGAAACCGACGTTTATCGACGAAGTCAAACCGGTGAACGTGGAAg > 1:1436449/1‑66 (MQ=255) tGGTTGAGCCGGGTCTGAACTGGAAACCGACGTTTATCGACGAAGTCAAACCGGTGAACGTGGAAGc > 1:999042/1‑67 (MQ=255) tGGTTGAGCCGGGTCTGAACTGGAAACCGACGTTTATCGACGAAGTCAAACCGGTGAACGTGGAAGc > 1:472120/1‑67 (MQ=255) tGGTTGAGCCGGGTCTGAACTGGAAACCGACGTTTATCGACGAAGTCAAACCGGTGAACGTGGAAGc > 1:951405/1‑67 (MQ=255) ccGGGTCTGAACTGGAAACCGACGTTTATCGACGAAGTCAAACCGGTGAACGTGGAAGCCGTGCGTGa < 1:1352107/68‑1 (MQ=255) cGGGTCTGAACTGGAAACCGACGTTTATTGACGAAGTCAAACCGGTGAACGTg < 1:127879/53‑1 (MQ=255) cGGGTCTGAACTGGAAACCGACGTTTATTGACGAAGTCAAACCGGTGAACGTg < 1:757095/53‑1 (MQ=255) cGGGTCTGAACTGGAAACCGACGTTTATTGACGAAGTCAAACCGGTGAACGTg < 1:716989/53‑1 (MQ=255) cGGGTCTGAACTGGAAACCGACGTTTATTGACGAAGTCAAACCGGTGAACGTg < 1:570753/53‑1 (MQ=255) cGGGTCTGAACTGGAAACCGACGTTTATTGACGAAGTCAAACCGGTGAACGTg < 1:1206645/53‑1 (MQ=255) cGGGTCTGAACTGGAAACCGACGTTTATTGACGAAGTCAAACCGGTGAACGTg < 1:486433/53‑1 (MQ=255) cGGGTCTGAACTGGAAACCGACGTTTATTGACGAAGTCAAACCGGTGAACGTg < 1:409745/53‑1 (MQ=255) cGGGTCTGAACTGGAAACCGACGTTTATTGACGAAGTCAAACCGGTGAACGTg < 1:1480732/53‑1 (MQ=255) cGGGTCTGAACTGGAAACCGACGTTTATTGACGAAGTCAAACCGGTGAACGTg < 1:18025/53‑1 (MQ=255) cGGGTCTGAACTGGAAACCGACGTTTATTGACGAAGTCAAACCGGTGAACGTg < 1:1917788/53‑1 (MQ=255) cGGGTCTGAACTGGAAACCGACGTTTATTGACGAAGTCAAACCGGTGAACGTg < 1:325635/53‑1 (MQ=255) cGGGTCTGAACTGGAAACCGACGTTTATTGACGAAGTCAAACCGGTGAACGTg < 1:3240982/53‑1 (MQ=255) cGGGTCTGAACTGGAAACCGACGTTTATTGACGAAGTCAAACCGGTGAACGTg < 1:3086585/53‑1 (MQ=255) cGGGTCTGAACTGGAAACCGACGTTTATTGACGAAGTCAAACCGGTGAACGTg < 1:2595010/53‑1 (MQ=255) cGGGTCTGAACTGGAAACCGACGTTTATTGACGAAGTCAAACCGGTGAACGTg < 1:2080840/53‑1 (MQ=255) cGGGTCTGAACTGGAAACCGACGTTTATTGACGAAGTCAAACCGGTGAACGTg < 1:2022776/53‑1 (MQ=255) cGGGTCTGAACTGGAAACCGACGTTTATTGACGAAGTCAAACCGGTGAACGTg < 1:2940974/53‑1 (MQ=255) cGGGTCTGAACTGGAAACCGACGTTTATTGACGAAGTCAAACCGGTGAACGTg < 1:1959672/53‑1 (MQ=255) cGGGTCTGAACTGGAAACCGACGTTTATTGACGAAGTCAAACCGGTGAACGTg < 1:2012019/53‑1 (MQ=255) tCTGAACTGGAAACCGACGTTTATTGACGAAGTCAAACCGGTGAACGTg < 1:3338854/49‑1 (MQ=255) tCTGAACTGGAAACCGACGTTTATCGACGAAGTCa < 1:792807/35‑1 (MQ=255) tGAACTGGAAACCGACGTTTATCGACGAAGTCAAACCGGTGAACGTGGAAGCcgtgcg < 1:347603/58‑1 (MQ=255) tGAACTGGAAACCGACGTTTATCGACGAAGTCAAACCGGTGAACGTGGAAGCcgtgcg < 1:2580605/58‑1 (MQ=255) tGAACTGGAAACCGACGTTTATCGACGAAGTCAAACCGGTGAACGTGGAAGCcgtgcg < 1:516715/58‑1 (MQ=255) cTGGAAACCGACGTTTATCGACGAAGTCAAACCGGTGAACGTGGAAGCCGTGCGTGAACTGGCCGc < 1:244968/66‑1 (MQ=255) aaCCGACGTTTATCGGCGAAGTCAAACCGGTGAACGTGGAAGCCGTGCGTGAACTGGCCGCTTCTGgt > 1:903911/1‑68 (MQ=255) aaCCGACGTTTATCGACGAAGTCAAACCGGTGATCGAGGAAGCCGTGCGTGAACTGGCAGCttgt > 1:869625/1‑63 (MQ=255) aaCCGACGTTTATCGACGAAGTCAAACCGGTGAAc > 1:1434932/1‑35 (MQ=255) aaCCGACGTTTATCGACGAAGTCAAACCGGTGAACGTGGAAGCCGTGCGTGAACTGGCCGc > 1:951303/1‑61 (MQ=255) aaCCGACGTTTATCGACGAAGTCAAACCGGTGAACGTGGAAGCCGTGCGTGAACTGGCCGCTTCTGgt > 1:2872574/1‑68 (MQ=255) aaCCGACGTTTATCGACGAAGTCAAACCGGTGAACGTGGAAGCCGTGCGTGAACTGGCCGCTTCTGgt > 1:1118131/1‑68 (MQ=255) aaCCGACGTTTATCGACGAAGTCAAACCGGTGAACGTGGAAGCCGTGCGTGAACTGGCCGCTTCTGgt > 1:590556/1‑68 (MQ=255) aaCCGACGTTTATCGACGAAGTCAAACCGGTGAACGTGGAAGCCGTGCGTGAACTGGCCGCTTCTGgt > 1:280664/1‑68 (MQ=255) aaCCGACGTTTATCGACGAAGTCAAACCGGTGAACGTGGAAGCCGTGCGTGAACTGGCCGCTTCTGgt > 1:2101531/1‑68 (MQ=255) aaCCGACGTTTATCGACGAAGTCAAACCGGTGAACGTGGAAGCCGTGCGTGAACTGGCCGCTTCTGgt > 1:2699235/1‑68 (MQ=255) aaCCGACGTTTATCGACGAAGTCAAACCGGTGAACGTGGAAGCCGTGCGTGAACTGGCCGCTTCTGgt > 1:2514709/1‑68 (MQ=255) aaCCGACGTTTATCGACGAAGTCAAACCGGTGAACGTGGAAGCCGTGCGTGAACTGGCCGCTTCTGgt > 1:771202/1‑68 (MQ=255) aaCCGACGTTTATCGACGAAGTCAAACCGGTGAACGTGGAAGCCGTGCGTGAACTGGCCGCTTCTGgt > 1:2019829/1‑68 (MQ=255) aCCGACGTTTATCGACGAAGTCAAACCGGTGAACGTGGAAGCCGTGCGTGAACTGGCCGCTTCTGgtgt < 1:3053067/69‑1 (MQ=255) aCCGACGTTTATCGACGAAGTCAAACCGGTGAACGTGGAAGCCGTGCGTGAACTGGCCGCTTCTGgtgt < 1:2342323/69‑1 (MQ=255) aCCGACGTTTATCGACGAAGTCAAACCGGTGAACGTGGAAGCCGTGCGTGAACTGGCCGCTTCTGgtgt < 1:3075784/69‑1 (MQ=255) gACGTTTATCGACGAAGTCAAACCGGTGAACGTGGAAGCCGTGCGTGAACTGGCCGCTTCTGGTGTGAt > 1:1264708/1‑69 (MQ=255) tttATCGACGAAGTCAAACCGGTGAACGTGGAAGCCGTGCGTGAACTGGCCGCTTCTGGTGTGATGCTg > 1:425399/1‑69 (MQ=255) tttATCGACGAAGTCAAACCGGTGAACGTGGAAGCCGTGCGTGAACTGGCCGCTTCTGGTGTGATGCTg > 1:1473681/1‑69 (MQ=255) | CGCTTTGGTAAATTCAGCCATCTGGTTGAGCCGGGTCTGAACTGGAAACCGACGTTTATCGACGAAGTCAAACCGGTGAACGTGGAAGCCGTGCGTGAACTGGCCGCTTCTGGTGTGATGCTG > minE/2864027‑2864149 |
| Alignment Legend |
|---|
Aligned base mismatch/match (shaded by quality score): ATCG/ATCG < 3 ≤ ATCG/ATCG < 14 ≤ ATCG/ATCG < 32 ≤ ATCG/ATCG < 36 ≤ ATCG/ATCG |
Unaligned base: atcg Masked matching base: atcg Alignment gap: ‑ Deleted base: ‑ |