| Predicted mutation | |||||||
|---|---|---|---|---|---|---|---|
| evidence | seq id | position | mutation | freq | annotation | gene | description |
| RA | minE | 2,865,711 | C→T | 43.4% | R250R (CGC→CGT) | hflC → | modulator for HflB protease specific for phage lambda cII repressor |
| Read alignment evidence... | |||||||||||
|---|---|---|---|---|---|---|---|---|---|---|---|
| seq id | position | ref | new | freq | score (cons/poly) | reads | annotation | genes | product | ||
| * | minE | 2,865,711 | 0 | C | T | 43.4% | 19.7 / 49.8 | 69 | R250R (CGC→CGT) | hflC | modulator for HflB protease specific for phage lambda cII repressor |
| Reads supporting (aligned to +/- strand): ref base C (18/21); new base T (4/26); total (22/47) | |||||||||||
| Fisher's exact test for biased strand distribution p-value = 4.37e-03 | |||||||||||
| Kolmogorov-Smirnov test that lower quality scores support variant p-value = 1.00e+00 | |||||||||||
CGCCGAGCGTGAAGCGGTAGCGCGTCGTCACCGTTCACAAGGTCAGGAAGAAGCGGAAAAACTGCGCGCGACTGCCGACTATGAAGTGACCAGAACGCTGGCAGAAGCTGAGCGTCAGGGCCGCATCATGCG > minE/2865645‑2865776 | cgcCGAGCGTGAAGCGGTAGCGCGTCGTCACCGTTCACAAGGTCAGGAAGAAGCGGAAAAACTgcgcgc < 1:1093366/69‑1 (MQ=255) gcCGAGCGTGAAGCGGTAGCGCGTCGTCACCGTTCACAAGGTCAGGAAGAAGCGGAAAAACTGcgcgcg < 1:3177176/69‑1 (MQ=255) gcCGAGCGTGAAGCGGTAGCGCGTCGTCACCGTTCACAAGGTCAGGAAGAAGCGGAAAAACTGcgcgcg < 1:603558/69‑1 (MQ=255) cGTGAAGCGGTAGCGCGTCGTCACCGTTCACAAGGTCAGGAAGAAGCGGAAAAACTGCGTGCAACTGcc > 1:862094/1‑69 (MQ=255) cGTGAAGCGGTAGCGCGTCGTCACCGTTCACAAGGTCAGGAAGAAGCGGAAAAACTGCGTGCAACTGcc > 1:2698775/1‑69 (MQ=255) cGTGAAGCGGTAGCGCGTCGTCACCGTTCACAAGGTCAGGAAGAAGCGGAAAAACTGCGTGCAACTGcc > 1:1580532/1‑69 (MQ=255) cGTGAAGCGGTAGCGCGTCGTCACCGTTCACAAGGTCAGGAAGAAGCGGAAAAACTGCGTGCAACTGcc > 1:1537524/1‑69 (MQ=255) ggTAGCGCGTCGTCACCGTTCACAAGGTCAGGACGAAGCGGAAAAACTGCGCGCGACTGCCGACTATGa < 1:3363708/69‑1 (MQ=255) ggTAGCGCGTCGTCACCGTTCACAAGGTCAGGAAGAAGCGGAAAAACTGCGCGCGACTGCCGACTATGa < 1:1666100/69‑1 (MQ=255) ggTAGCGCGTCGTCACCGTTCACAAGGTCAGGAAGAAGCGGAAAAACTGCGCGCGACTGCCGACTATGa < 1:2566287/69‑1 (MQ=255) ggTAGCGCGTCGTCACCGTTCACAAGGTCAGGAAGAAGCGGAAAAACTGCGCGCGACTGCCGACTATGa < 1:2643381/69‑1 (MQ=255) ggTAGCGCGTCGTCACCGTTCACAAGGTCAGGAAGAAGCGGAAAAACTGCGCGCGACTGCCGACTATGa < 1:2657188/69‑1 (MQ=255) ggTAGCGCGTCGTCACCGTTCACAAGGTCAGGAAGAAGCGGAAAAACTGCGCGCGACTGCCGACTATGa < 1:2308629/69‑1 (MQ=255) ggTAGCGCGTCGTCACCGTTCACAAGGTCAGGAAGAAGCGGAAAAACTGCGCGCGACTGCCGACTATGa < 1:2078322/69‑1 (MQ=255) ggTAGCGCGTCGTCACCGTTCACAAGGTCAGGAAGAAGCGGAAAAACTGCGCGCGACTGCCGACTATGa < 1:1982601/69‑1 (MQ=255) ggTAGCGCGTCGTCACCGTTCACAAGGTCAGGAAGAAGCGGAAAAACTGCGCGCGACTGCCGACTATGa < 1:3026871/69‑1 (MQ=255) ggTAGCGCGTCGTCACCGTTCACAAGGTCAGGAAGAAGCGGAAAAACTGCGCGCGACTGCCGACTATGa < 1:870478/69‑1 (MQ=255) ggTAGCGCGTCGTCACCGTTCACAAGGTCAGGAAGAAGCGGAAAAACTGCGCGCGACTGCCGACTATGa < 1:811138/69‑1 (MQ=255) ggTAGCGCGTCGTCACCGTTCACAAGGTCAGGAAGAAGCGGAAAAACTGCGCGCGACTGCCGACTATGa < 1:78542/69‑1 (MQ=255) ggTAGCGCGTCGTCACCGTTCACAAGGTCAGGAAGAAGCGGAAAAACTGCGCGCGACTGCCGACTATGa < 1:779052/69‑1 (MQ=255) gcgcGTCGTCACCGTTCACAAGGTCAGGAAGAAGCGGAAAAACTGCGCGCGACTGCCGACTATGAAGTg < 1:556095/69‑1 (MQ=255) gcgcGTCGTCACCGTTCACAAGGTCAGGAAGAAGCGGAAAAACTGCGCGCGACTGCCGACTATGAAGTg < 1:508996/69‑1 (MQ=255) gcgcGTCGTCACCGTTCACAAGGTCAGGAAGAAGCGGAAAAACTGCGCGCGACTGCCGACTATGAAGTg < 1:1207248/69‑1 (MQ=255) gcgcGTCGTCACCGTTCACAAGGTCAGGAAGAAGCGGAAAAACTGCGCGCGACTGCCGACTATGAAGTg < 1:2758024/69‑1 (MQ=255) aCCGTTCACAAGGTCAGGAAGAAGCGGAAAAACTGCGCGCGACTGCCGACTATGAAGTGCCCAGAActc > 1:1049346/1‑67 (MQ=255) aCCGTTCACAAGGTCAGGAAGAAGCGGAAAAACTGCGCGCGACTGCCGACTATGAAGTGACCAGAACGc > 1:800513/1‑69 (MQ=255) aCCGTTCACAAGGTCAGGAAGAAGCGGAAAAACTGCGCGCGACTGCCGACTATGAAGTGACCAGAACGc > 1:1556449/1‑69 (MQ=255) aCCGTTCACAAGGTCAGGAAGAAGCGGAAAAACTGCGCGCGACTGCCGACTATGAAGTGACCAGAACGc > 1:1096832/1‑69 (MQ=255) aCCGTTCACAAGGTCAGGAAGAAGCGGAAAAACTGCGCGCGACTGCCGACTATGAAGTGACCAGAACGc > 1:412718/1‑69 (MQ=255) aCCGTTCACAAGGTCAGGAAGAAGCGGAAAAACTGCGCGCGACTGCCGACTATGAAGTGACCAGAACGc > 1:2739139/1‑69 (MQ=255) aCCGTTCACAAGGTCAGGAAGAAGCGGAAAAACTGCGCGCGACTGCCGACTATGAAGTGACCAGAACGc > 1:2230606/1‑69 (MQ=255) aCCGTTCACAAGGTCAGGAAGAAGCGGAAAAACTGCGCGCGACTGCCGACTATGAAGTGACCAGAACGc > 1:1517876/1‑69 (MQ=255) aCCGTTCACAAGGTCAGGAAGAAGCGGAAAAACTGCGCGCGACTGCCGACTATGAAGTGACCAGAACGc > 1:276630/1‑69 (MQ=255) aCCGTTCACAAGGTCAGGAAGAAGCGGAAAAACTGCGCGCGACTGCCGACTATGAAGTGACCAGAACGc > 1:2922826/1‑69 (MQ=255) aCCGTTCACAAGGTCAGGAAGAAGCGGAAAAACTGCGCGCGACTGCCGACTATGAAGTGACCAGAACGc > 1:1823540/1‑69 (MQ=255) aCCGTTCACAAGGTCAGGAAGAAGCGGAAAAACTGCGCGCGACTGCCGACTATGAAGTGACCAGAACGc > 1:1363403/1‑69 (MQ=255) aCCGTTCACAAGGTCAGGAAGAAGCGGAAAAACTGCGCGCGACTGCCGACTATGAAGTGACCAGAAAGc > 1:1943490/1‑69 (MQ=255) aCCGTTCACAAGGTCAGGAAGAAGCGGAAAAACTGCGCGCGACTGCCGACTATGAAGTGAACAGAACGc > 1:695219/1‑69 (MQ=255) aCCGTTCACAAGGTCAGCAAGAAGCGGAAAAACTGCGCGCGACTGCCGACTATGAAGTGACCAGAACg > 1:3201538/1‑68 (MQ=255) cacaAGGTCAGGAAGAAGCGGAAAAACTGCGTGCAACTGcc < 1:3277817/41‑1 (MQ=38) cacaAGGTCAGGAAGAAGCGGAAAAACTGCGTGCAACTGcc < 1:939221/41‑1 (MQ=38) cacaAGGTCAGGAAGAAGCGGAAAAACTGCGTGCAACTGcc < 1:262872/41‑1 (MQ=38) cacaAGGTCAGGAAGAAGCGGAAAAACTGCGTGCAACTGcc < 1:2417047/41‑1 (MQ=38) cacaAGGTCAGGAAGAAGCGGAAAAACTGCGTGCAACTGcc < 1:1121494/41‑1 (MQ=38) cacaAGGTCAGGAAGAAGCGGAAAAACTGCGTGCAACTGcc < 1:1593263/41‑1 (MQ=38) cacaAGGTCAGGAAGAAGCGGAAAAACTGCGCGCGACTGCCGACTATGAAGTGACCAg < 1:2690545/58‑1 (MQ=255) cacaAGGTCAGGAAGAAGCGGAAAAACTGCGCGCGACTGCCGACTATGAAGTGACCAg < 1:1344114/58‑1 (MQ=255) gTCAGGAAGAAGCGGAAAAACTGCGTGCAACTGCCGACTATGAAGTGACCAGAACGCTGGCAGAAGCTg < 1:1051969/69‑1 (MQ=255) gTCAGGAAGAAGCGGAAAAACTGCGTGCAACTGCCGACTATGAAGTGACCAGAACGCTGGCAGAAGCTg < 1:910505/69‑1 (MQ=255) gTCAGGAAGAAGCGGAAAAACTGCGTGCAACTGCCGACTATGAAGTGACCAGAACGCTGGCAGAAGCTg < 1:1142190/69‑1 (MQ=255) gTCAGGAAGAAGCGGAAAAACTGCGTGCAACTGCCGACTATGAAGTGACCAGAACGCTGGCAGAAGCTg < 1:1278549/69‑1 (MQ=255) gTCAGGAAGAAGCGGAAAAACTGCGTGCAACTGCCGACTATGAAGTGACCAGAACGCTGGCAGAAGCTg < 1:65940/69‑1 (MQ=255) gTCAGGAAGAAGCGGAAAAACTGCGTGCAACTGCCGACTATGAAGTGACCAGAACGCTGGCAGAAGCTg < 1:603687/69‑1 (MQ=255) gTCAGGAAGAAGCGGAAAAACTGCGTGCAACTGCCGACTATGAAGTGACCAGAACGCTGGCAGAAGCTg < 1:1581911/69‑1 (MQ=255) gTCAGGAAGAAGCGGAAAAACTGCGTGCAACTGCCGACTATGAAGTGACCAGAACGCTGGCAGAAGCTg < 1:43306/69‑1 (MQ=255) gTCAGGAAGAAGCGGAAAAACTGCGTGCAACTGCCGACTATGAAGTGACCAGAACGCTGGCAGAAGCTg < 1:3374181/69‑1 (MQ=255) gTCAGGAAGAAGCGGAAAAACTGCGTGCAACTGCCGACTATGAAGTGACCAGAACGCTGGCAGAAGCTg < 1:3286699/69‑1 (MQ=255) gTCAGGAAGAAGCGGAAAAACTGCGTGCAACTGCCGACTATGAAGTGACCAGAACGCTGGCAGAAGCTg < 1:1766242/69‑1 (MQ=255) gTCAGGAAGAAGCGGAAAAACTGCGTGCAACTGCCGACTATGAAGTGACCAGAACGCTGGCAGAAGCTg < 1:1863827/69‑1 (MQ=255) gTCAGGAAGAAGCGGAAAAACTGCGTGCAACTGCCGACTATGAAGTGACCAGAACGCTGGCAGAAGCTg < 1:2651902/69‑1 (MQ=255) gTCAGGAAGAAGCGGAAAAACTGCGTGCAACTGCCGACTATGAAGTGACCAGAACGCTGGCAGAAGCTg < 1:238898/69‑1 (MQ=255) gTCAGGAAGAAGCGGAAAAACTGCGTGCAACTGCCGACTATGAAGTGACCAGAACGCTGGCAGAAGCTg < 1:2023285/69‑1 (MQ=255) gTCAGGAAGAAGCGGAAAAACTGCGTGCAACTGCCGACTATGAAGTGACCAGAACGCTGGCAGAAGCTg < 1:1942106/69‑1 (MQ=255) gTCAGGAAGAAGCGGAAAAACTGCGTGCAACTGCCGACTATGAAGTGACCAGAACGCTGGCAGAAGCTg < 1:199465/69‑1 (MQ=255) gTCAGGAAGAAGCGGAAAAACTGCGTGCAACTGCCGACTATGAAGTGACCAGAACGCTGGCAGAAGCTg < 1:3224500/69‑1 (MQ=255) cAGGAAGAAGCGGAAAAACTGCGCGCGACTGCCGACTATGAAGTGACCAGAACGCTGGCAGAAGCTGAg > 1:2409814/1‑69 (MQ=255) cAGGAAGAAGCGGAAAAACTGCGCGCGACTGCCGACTATGAAGTGACCAGAACGCTGGCAGAAGCTGAg > 1:2053463/1‑69 (MQ=255) cAGGAAGAAGCGGAAAAACTGCGCGCGACTGCCGACTATGAAGTGACCAGAACGCTGGCAGAAGCTGAg > 1:1578873/1‑69 (MQ=255) aGGAAGAAGCGGAAAAACTGCGTGCAACTGCCGACTATGAAGTGACCAGAACGCTGGCAGAAGCTg < 1:2274666/66‑1 (MQ=255) aagCGGAAAAACTGCGCGCGACTGCCGACTATGAAGTGACCAg < 1:1582517/43‑1 (MQ=255) gAAAAACTGCGTGCAACTGCCGACTATGAAGTGACCAGAACGCTGGCAGAAGCTg < 1:2848238/55‑1 (MQ=255) aaaaCTGCGCGCGACTGCCGACTATGAAGTGACCAGAACGCTGGCAGAAGCTGAGCGTCAGGGCCGcat < 1:2489220/69‑1 (MQ=255) gcgcgcGACTGCCGACTATGAAGTGACCAGAACGCTGGCAGAAg > 1:1891970/1‑44 (MQ=255) gcgcgcGACTGCCGACTATGAAGTGACCAGAACGCTGGCAGAAGCTGAGCGTCAGGGCCGCATCATGCg > 1:3036044/1‑69 (MQ=255) gcgcgcGACTGCCGACTATGAAGTGACCAGAACGCTGGCAGAAGCTGAGCGTCAGGGCCGCATCATGCg > 1:659558/1‑69 (MQ=255) gcgcgcGACTGCCGACTATGAAGTGACCAGAACGCTGGCAGAAGCTGAGCGTCAGGGCCGCATCATGCg > 1:1524815/1‑69 (MQ=255) gcgcgcGACTGCCGACTATGAAGTGACCAGAACGCTGGCAGAAGCTGAGCGTCAGGGCCGCATCATGCg > 1:344216/1‑69 (MQ=255) gcgcgcGACTGCCGACTATGAAGTGACCAGAACGCTGGCAGAAGCTGAGCGTCAGGGCCGCATCATGCg > 1:1333052/1‑69 (MQ=255) gcgcgcGACTGCCGACTATGAAGTGACCAGAACGCTGGCAGAAGCTGAGCGTCAGGGCCGCATCATGCg > 1:3120740/1‑69 (MQ=255) gcgcgcGACTGCCGACTATGAAGTGACCAGAACGCTGGCAGAAGCTGAGCGTCAGGGCCGCATCATGCg > 1:1731994/1‑69 (MQ=255) gcgcgcGACTGCCGACTATGAAGTGACCAGAACGCTGGCAGAAGCTGAGCGTCAGGGCCGCATCATGCg > 1:108763/1‑69 (MQ=255) gcgcgcGACTGCCGACTATGAAGTGACCAGAACGCTGGCAGAAGCTGAGCGTCAGGGCCGCATCATGCg > 1:3282256/1‑69 (MQ=255) | CGCCGAGCGTGAAGCGGTAGCGCGTCGTCACCGTTCACAAGGTCAGGAAGAAGCGGAAAAACTGCGCGCGACTGCCGACTATGAAGTGACCAGAACGCTGGCAGAAGCTGAGCGTCAGGGCCGCATCATGCG > minE/2865645‑2865776 |
| Alignment Legend |
|---|
Aligned base mismatch/match (shaded by quality score): ATCG/ATCG < 3 ≤ ATCG/ATCG < 14 ≤ ATCG/ATCG < 32 ≤ ATCG/ATCG < 36 ≤ ATCG/ATCG |
Unaligned base: atcg Masked matching base: atcg Alignment gap: ‑ Deleted base: ‑ |