| Predicted mutation | |||||||
|---|---|---|---|---|---|---|---|
| evidence | seq id | position | mutation | freq | annotation | gene | description |
| RA | minE | 2,891,666 | A→C | 43.9% | V107V (GTA→GTC) | ytfQ → | predicted sugar transporter subunit |
| Read alignment evidence... | |||||||||||
|---|---|---|---|---|---|---|---|---|---|---|---|
| seq id | position | ref | new | freq | score (cons/poly) | reads | annotation | genes | product | ||
| * | minE | 2,891,666 | 0 | A | C | 43.9% | 9.7 / 91.1 | 82 | V107V (GTA→GTC) | ytfQ | predicted sugar transporter subunit |
| Reads supporting (aligned to +/- strand): ref base A (18/28); new base C (20/16); total (38/44) | |||||||||||
| Fisher's exact test for biased strand distribution p-value = 1.82e-01 | |||||||||||
| Kolmogorov-Smirnov test that lower quality scores support variant p-value = 9.81e-01 | |||||||||||
AAAAGAGGCGAAAGATGCCGAAATCCCGGTATTCTTGCTCGATCGTTCCATTGATGTGAAAGACAAATCTCTCTATATGACCACCGTCA > minE/2891636‑2891724 | aaaaGAGGCGAAAGATGCCGAAATCCCGGTcttctt > 1:1081365/1‑36 (MQ=255)aaaaGAGGCGAAAGATGCCGAAATCCCGGTCTTCTTGCTTGACCGTTCCATCGATGTGAAAGACAAAtc > 1:1011213/1‑69 (MQ=255)aaaaGAGGCGAAAGATGCCGAAATCCCGGTCTTCTTGCTTGACCGTTCCATCGATGTGAAAGACAAAtc > 1:2157915/1‑69 (MQ=255)aaaaGAGGCGAAAGATGCCGAAATCCCGGTCTTCTTGCTTGACCGTTCCATCGATGTGAAAGACAAAtc > 1:2276384/1‑69 (MQ=255)aaaaGAGGCGAAAGATGCCGAAATCCCGGTCTTCTTGCTTGACCGTTCCATCGATGTGAAAGACAAAtc > 1:278980/1‑69 (MQ=255)aaaaGAGGCGAAAGATGCCGAAATCCCGGTCTTCTTGCTTGACCGTTCCATCGATGTGAAAGACAAAtc > 1:1064174/1‑69 (MQ=255)aaaaGAGGCGAAAGATGCCGAAATCCCGGTCTTCTTGCTTGACCGTTCCATCGATGTGAAAGACAAAtc > 1:2809079/1‑69 (MQ=255)aaaaGAGGCGAAAGATGCCGAAATCCCGGTCTTCTTGCTTGACCGTTCCATCGATGTGAAAGACAAAtc > 1:555131/1‑69 (MQ=255)aaaaGAGGCGAAAGATGCCGAAATCCCGGTCTTCTTGCTTGACCGTTCCATCGATGTGAAAGACAAAtc > 1:404360/1‑69 (MQ=255)aaaaGAGGCGAAAGATGCCGAAATCCCGGTCTTCTTGCTTGACCGTTCCATCGATGTGAAAGACAAAtc > 1:1451515/1‑69 (MQ=255)aaaaGAGGCGAAAGATGCCGAAATCCCGGTCTTCTTGCTTGACCGTTCCATCGATGTGAAAGACAAAtc > 1:3182900/1‑69 (MQ=255)aaaaGAGGCGAAAGATGCCGAAATCCCGGTCTTCTTGCTTGACCGTTCCATCGATGTGAAAGACAAAt > 1:1916312/1‑68 (MQ=255)aaaaGAGGCGAAAGATGCCGAAATCCCGGTCTTCTTGCTTGACCGTTCCATCGATGTGAAAGACAAAt > 1:1312880/1‑68 (MQ=255)aaaaGAGGCGAAAGATGCCGAAATCCCGGTCTTCTTGCTTGACCGTTCCATCGATGTGAAAGACAAAt > 1:1232104/1‑68 (MQ=255)aaaaGAGGCGAAAGATGCCGAAATCCCGGTCTTCTTGCTTGACCGTTCCATCGATGTGAAAGACAAAt > 1:640047/1‑68 (MQ=255)aaaaGAGGCGAAAGATGCCGAAATCCCGGTATTCTTTCTCGATCGTTCCATTGATGTGAAAGACAAAtc > 1:577194/1‑69 (MQ=255)aaaaGAGGCGAAAGATGCCGAAATCCCGGTATTCTTGCTCGATCGTTc > 1:3287877/1‑48 (MQ=255)aaaaGAGGCGAAAGATGCCGAAATCCCGGTATTCTTGCTCGATCGTTc > 1:3071453/1‑48 (MQ=255)aaaaGAGGCGAAAGATGCCGAAATCCCGGTATTCTTGCTCGATCGTTc > 1:2833657/1‑48 (MQ=255)aaaaGAGGCGAAAGATGCCGAAATCCCGGTATTCTTGCTCGATCGTTc < 1:632026/48‑1 (MQ=255)aaaaGAGGCGAAAGATGCCGAAATCCCGGTATTCTTGCTCGATCGTTc < 1:857584/48‑1 (MQ=255)aaaaGAGGCGAAAGATGCCGAAATCCCGGTATTCTTGCTCGATCGTTc > 1:920712/1‑48 (MQ=255)aaaaGAGGCGAAAGATGCCGAAATCCCGGTATTCTTGCTCGATCGTTCCATTGATGTGAAAGACAAAtc > 1:734304/1‑69 (MQ=255)aaaaGAGGCGAAAGATGCCGAAATCCCGGTATTCTTGCTCGATCGTTCCATTGATGTGAAAGACAAAtc > 1:394000/1‑69 (MQ=255)aaaaGAGGCGAAAGATGCCGAAATCCCGGTATTCTTGCTCGATCGTTCCATTGATGTGAAAGACAAAtc > 1:1176520/1‑69 (MQ=255)aaaaGAGGCGAAAGATGCCGAAATCCCGGTATTCTTGCTCGATCGTTCCATTGATGTGAAAGACAAAtc > 1:1267536/1‑69 (MQ=255)aaaaGAGGCGAAAGATGCCGAAATCCCGGTATTCTTGCTCGATCGTTCCATTGATGTGAAAGACAAAtc > 1:3155210/1‑69 (MQ=255)aaaaGAGGCGAAAGATGCCGAAATCCCGGTATTCTTGCTCGATCGTTCCATTGATGTGAAAGACAAAtc > 1:1088637/1‑69 (MQ=255)aaaaGAGGCGAAAGATGCCGAAATCCCGGTATTCTTGCTCGATCGTTCCATTGATGTGAAAGACAAAtc > 1:2058382/1‑69 (MQ=255)aaaaGAGGCGAAAGATGCCGAAATCCCGCTCTTCTTGCTTGACCGTTCCATCGATGTGAAAGACAAAtc > 1:2142988/1‑69 (MQ=255)aaaaGAGGCGAAAGATGCCGAAATACCGGTATTCTTGCTCGATCGTTCCATTGATGTGAAAGACAAAtc > 1:1249944/1‑69 (MQ=255)aaaaGAGGCGAAAGATGCAGAAATCCCGGTATTCTTGCTCGAt > 1:3189473/1‑43 (MQ=255)aaaaGAGGCGAAAGATGACGAAATCCCGGTATTCTTGCTCGATCGTTCCATAGATGTGAAAGACAAAt > 1:2915436/1‑68 (MQ=255) gagGCGAAAGATGCCGAAATCCCGTTATTCTTGCTCGATCGTTCCATTGATGTGAAAGACAAAtctctc < 1:636958/69‑1 (MQ=255) gagGCGAAAGATGCCGAAATCCCGGTATTCTTGCTCGATCGTTCCATTGATGTGAAAGACAAAtctctc < 1:577110/69‑1 (MQ=255) gagGCGAAAGATGCCGAAATCCCGGTATTCTTGCTCGATCGTTCCATTGATGTGAAAGACAAAtctctc < 1:1884170/69‑1 (MQ=255) gagGCGAAAGATGCCGAAATCCCGGTATTCTTGCTCGATCGTTCCATTGATGTGAAAGACAAAtctctc < 1:1823933/69‑1 (MQ=255) gagGCGAAAGATGCCGAAATCCCGGTATTCTTGCTCGATCGTTCCATTGATGTGAAAGACAAAtctctc < 1:2478787/69‑1 (MQ=255) ggCGAAAGATGCCGAAATCCCGGTATTCTTGCTCGATCGTTCCAtt < 1:1795354/46‑1 (MQ=255) ggCGAAAGATGCCGAAATCCCGGTATTCTTGCTCGATCGTTCCAtt < 1:2993751/46‑1 (MQ=255) ggCGAAAGATGCCGAAATCCCGGTATTCTTGCTCGATCGTTCCAtt < 1:543908/46‑1 (MQ=255) ggCGAAAGATGCCGAAATCCCGGTATTCTTGCTCGATCGTTCCAtt < 1:2327048/46‑1 (MQ=255) ggCGAAAGATGCCGAAATCCCGGTATTCTTGCTCGATCGTTCCAtt < 1:2304811/46‑1 (MQ=255) ggCGAAAGATGCCGAAATCCCGGTATTCTTGCTCGATCGTTCCAtt < 1:1898687/46‑1 (MQ=255) ggCGAAAGATGCCGAAATCCCGGTATTCTTGCTCGATCGTTCCAtt < 1:685507/46‑1 (MQ=255) ggCGAAAGATGCCGAAATCCCGGTATTCTTGCTCGATCGTTCCAtt < 1:379015/46‑1 (MQ=255) ggCGAAAGATGCCGAAATCCCGGTATTCTTGCTCGATCGTTCCAtt < 1:1979599/46‑1 (MQ=255) ggCGAAAGATGCCGAAATCCCGGTATTCTTGCTCGATCGTTCCAtg < 1:1967305/46‑2 (MQ=255) ggCGAAAGATGCCGAAATCCCGGTATTCTTGCTCGATCGTTCCATTGATGTGAAAGACAAATCTCTCta < 1:1486683/69‑1 (MQ=255) ggCGAAAGATGCCGAAATCCCGGTATTCTTGCTCGATCGTTCCATTGATGTGAAAGACAAATCTCTCta < 1:807931/69‑1 (MQ=255) ggCGAAAGATGCCGAAATCCCGGTATTCTTGCTCGATCGTTCCATTGATGTGAAAGACAAATCTCTCta < 1:488498/69‑1 (MQ=255) ggCGAAAGATGCCGAAATCCCGGTATTCTTGCTCGATCGTTCCATTGATGTGAAAGACAAATCTCTCta < 1:1348079/69‑1 (MQ=255) ggCGAAAGATGACGAAATCCCGGTATTCTTGCTCGATCGTTCCAtt < 1:3197667/46‑1 (MQ=255) gCGAAAGATGCCGAAATCCCGGTATTCTTGCTCGATCGTTCCAtt < 1:1565902/45‑1 (MQ=255) tGCCGAAATCCCGGTATTCTTGCTCGATCGTTCCATTGATGTGAAAGACAAATCTCTCTATATGaccac > 1:1434670/1‑69 (MQ=255) gCCGATATCCCGGTCTTCTTGCTTGACCGTTCCATCGATGTGAAAGACAAATCTCTCTATATGaccacc < 1:2289776/69‑1 (MQ=255) gCCGAAATCCCGGTCTTCTTGCTTGACCGTTCCATCGATGTGAAAGACAAATCTCTCTATATGaccacc < 1:460890/69‑1 (MQ=255) gCCGAAATCCCGGTCTTCTTGCTTGACCGTTCCATCGATGTGAAAGACAAATCTCTCTATATGaccacc < 1:433441/69‑1 (MQ=255) gCCGAAATCCCGGTCTTCTTGCTTGACCGTTCCATCGATGTGAAAGACAAATCTCTCTATATGaccacc < 1:3322186/69‑1 (MQ=255) gCCGAAATCCCGGTCTTCTTGCTTGACCGTTCCATCGATGTGAAAGACAAATCTCTCTATATGaccacc < 1:2467738/69‑1 (MQ=255) gCCGAAATCCCGGTCTTCTTGCTTGACCGTTCCATCGATGTGAAAGACAAATCTCTCTATATGaccacc < 1:2581896/69‑1 (MQ=255) gCCGAAATCCCGGTCTTCTTGCTTGACCGTTCCATCGATGTGAAAGACAAATCTCTCTATATGaccacc < 1:105863/69‑1 (MQ=255) gCCGAAATCCCGGTCTTCTTGCTTGACCGTTCCATCGATGTGAAAGACAAATCTCTCTATATGaccacc < 1:2209042/69‑1 (MQ=255) gCCGAAATCCCGGTCTTCTTGCTTGACCGTTCCATCGATGTGAAAGACAAATCTCTCTATATGaccacc < 1:884555/69‑1 (MQ=255) gCCGAAATCCCGGTCTTCTTGCTTGACCGTTCCATCGATGTGAAAGACAAATCTCTCTATATGaccacc < 1:2073244/69‑1 (MQ=255) gCCGAAATCCCGGTCTTCTTGCTTGACCGTTCCATCGATGTGAAAGACAAATCTCTCTATATGaccacc < 1:194618/69‑1 (MQ=255) gCCGAAATCCCGGTCTTCTTGCTTGACCGTTCCATCGATGTGAAAGACAAATCTCTCTATATGaccacc < 1:1631821/69‑1 (MQ=255) gCCGAAATCCCGGTCTTCTTGCTTGACCGTTCCATCGATGTGAAAGACAAATCTCTCTATATGaccacc < 1:1892750/69‑1 (MQ=255) gCCGAAATCCCGGTCTTCTTGCTTGACCGTTCCATCGATGTGAAAGACAAATCTCTCTATATGaccacc < 1:1796171/69‑1 (MQ=255) gCCGAAATCCCGGTATTCTTGCTCGATCGTTCCATTGATGTGAGAGACAAATCTCTCTATATGaccacc > 1:2144617/1‑69 (MQ=255) gCCGAAATCCCGGTATTCTTGCTCGATCGTTCCATTGATGTGAAAGACAAATCTCTCTATATGaccacc > 1:2841016/1‑69 (MQ=255) ccGAAATCCCGGTCTTCTTGCTTGACCGTTCCATCGATGTGAAAGACAAATCTCTCTATATGaccacc < 1:2178567/68‑1 (MQ=255) ccGAAATCCCGGTCTTCTTGCTTGACCGTTCCATCGATGTGAAAGACAAATCTCTCTATATGaccacc < 1:1007700/68‑1 (MQ=255) gAAATCCCGGTATTCTTGCTCGATCGTTCCATTGATGTGAAAGACAAATCTCTCTATATGACCACCGt < 1:14747/68‑1 (MQ=255) gAAATCCCGGTATTCTTGCTCGATCGTTCCATTGATGTGAAAGACAAATCTCTCTATATGACCACCGt < 1:2228744/68‑1 (MQ=255) gAAATCCCGGTATTCTTGCTCGATCGTTCCATTGATGTGAAAGACAAATCTCTCTATATGACCACCGTc < 1:1596442/69‑1 (MQ=255) gAAATCCCGGTATTCTTGCCCGATCGTTCCATTGATGTGAAAGACAAATCTCTCTATATGACCACCGTc < 1:1109030/69‑1 (MQ=255) aaaTCCCGGTCTTCTTGCTTGACCGTTCCATCGATGTGAAAGACAAATCTCTCTATATGACCACCGtta > 1:50656/1‑67 (MQ=255) aaaTCCCGGTCTTCTTGCTTGACCGTTCCATCGATGTGAAAGACAAATCTCTCTATATGACCACCGtta > 1:301449/1‑67 (MQ=255) aaaTCCCGGTCTTCTTGCTTGACCGTTCCATCGATGTGAAAGACAAATCTCTCTATATGACCACCGtta > 1:1063370/1‑67 (MQ=255) aaaTCCCGGTCTTCTTGCTTGACCGTTCCATCGATGTGAAAGACAAATCTCTCTATATGACCACCGtta > 1:2193802/1‑67 (MQ=255) aaaTCCCGGTCTTCTTGCTTGACCGTTCCATCGATGTGAAAGACAAATCTCTCTATATGACCACCGtta > 1:1024553/1‑67 (MQ=255) gTATTCTTGCTCGATCGTTCCATTGATGTGAAAGACAAATCTCTCTATATGACCACCGt < 1:2229149/59‑1 (MQ=255) | AAAAGAGGCGAAAGATGCCGAAATCCCGGTATTCTTGCTCGATCGTTCCATTGATGTGAAAGACAAATCTCTCTATATGACCACCGTCA > minE/2891636‑2891724 |
| Alignment Legend |
|---|
Aligned base mismatch/match (shaded by quality score): ATCG/ATCG < 3 ≤ ATCG/ATCG < 14 ≤ ATCG/ATCG < 32 ≤ ATCG/ATCG < 36 ≤ ATCG/ATCG |
Unaligned base: atcg Masked matching base: atcg Alignment gap: ‑ Deleted base: ‑ |