| Predicted mutation | |||||||
|---|---|---|---|---|---|---|---|
| evidence | seq id | position | mutation | freq | annotation | gene | description |
| RA | minE | 2,891,675 | C→T | 26.7% | L110L (CTC→CTT) | ytfQ → | predicted sugar transporter subunit |
| Read alignment evidence... | |||||||||||
|---|---|---|---|---|---|---|---|---|---|---|---|
| seq id | position | ref | new | freq | score (cons/poly) | reads | annotation | genes | product | ||
| * | minE | 2,891,675 | 0 | C | T | 26.7% | 157.5 / 53.5 | 134 | L110L (CTC→CTT) | ytfQ | predicted sugar transporter subunit |
| Reads supporting (aligned to +/- strand): ref base C (50/48); new base T (20/16); total (70/64) | |||||||||||
| Fisher's exact test for biased strand distribution p-value = 6.99e-01 | |||||||||||
| Kolmogorov-Smirnov test that lower quality scores support variant p-value = 7.31e-01 | |||||||||||
Only 100 of 134 total aligned reads displayed.
AAAAGAGGCGAAAGATGCCGAAATCCCGGTATTCTTGCTCGATCGTTCCATTGATGTGAAAGACAAATCTCTCTATATGACCACCGTCACTGCCGACAACAT > minE/2891636‑2891737 | aaaaGAGGCGAAAGATGCCGAAATCCCGGTCTTCTTGCTTGACCGTTCCATCGATGTGAAAGACAAAtc > 1:1011213/1‑69 (MQ=255)aaaaGAGGCGAAAGATGCCGAAATCCCGGTCTTCTTGCTTGACCGTTCCATCGATGTGAAAGACAAAtc > 1:1064174/1‑69 (MQ=255)aaaaGAGGCGAAAGATGCCGAAATCCCGGTCTTCTTGCTTGACCGTTCCATCGATGTGAAAGACAAAtc > 1:2276384/1‑69 (MQ=255)aaaaGAGGCGAAAGATGCCGAAATCCCGGTCTTCTTGCTTGACCGTTCCATCGATGTGAAAGACAAAtc > 1:2809079/1‑69 (MQ=255)aaaaGAGGCGAAAGATGCCGAAATCCCGGTCTTCTTGCTTGACCGTTCCATCGATGTGAAAGACAAAtc > 1:555131/1‑69 (MQ=255)aaaaGAGGCGAAAGATGCCGAAATCCCGGTCTTCTTGCTTGACCGTTCCATCGATGTGAAAGACAAAt > 1:640047/1‑68 (MQ=255)aaaaGAGGCGAAAGATGCCGAAATCCCGGTATTCTTTCTCGATCGTTCCATTGATGTGAAAGACAAAtc > 1:577194/1‑69 (MQ=255)aaaaGAGGCGAAAGATGCCGAAATCCCGGTATTCTTGCTCGATCGTTc < 1:857584/48‑1 (MQ=255)aaaaGAGGCGAAAGATGCCGAAATCCCGGTATTCTTGCTCGATCGTTc < 1:632026/48‑1 (MQ=255)aaaaGAGGCGAAAGATGCCGAAATCCCGGTATTCTTGCTCGATCGTTc > 1:2833657/1‑48 (MQ=255)aaaaGAGGCGAAAGATGCCGAAATCCCGGTATTCTTGCTCGATCGTTc > 1:3071453/1‑48 (MQ=255)aaaaGAGGCGAAAGATGCCGAAATCCCGGTATTCTTGCTCGATCGTTc > 1:3287877/1‑48 (MQ=255)aaaaGAGGCGAAAGATGCCGAAATCCCGGTATTCTTGCTCGATCGTTCCATTGATGTGAAAGACAAAtc > 1:1267536/1‑69 (MQ=255)aaaaGAGGCGAAAGATGCCGAAATCCCGGTATTCTTGCTCGATCGTTCCATTGATGTGAAAGACAAAtc > 1:2058382/1‑69 (MQ=255)aaaaGAGGCGAAAGATGCCGAAATCCCGGTATTCTTGCTCGATCGTTCCATTGATGTGAAAGACAAAtc > 1:3155210/1‑69 (MQ=255)aaaaGAGGCGAAAGATGCCGAAATCCCGGTATTCTTGCTCGATCGTTCCATTGATGTGAAAGACAAAtc > 1:394000/1‑69 (MQ=255)aaaaGAGGCGAAAGATGCCGAAATCCCGGTATTCTTGCTCGATCGTTCCATTGATGTGAAAGACAAAtc > 1:1176520/1‑69 (MQ=255)aaaaGAGGCGAAAGATGCCGAAATCCCGGTATTCTTGCTCGATCGTTCCATTGATGTGAAAGACAAAtc > 1:1088637/1‑69 (MQ=255)aaaaGAGGCGAAAGATGCCGAAATCCCGGTATTCTTGCTCGATCGTTCCATTGATGTGAAAGACAAAtc > 1:734304/1‑69 (MQ=255)aaaaGAGGCGAAAGATGCCGAAATCCCGCTCTTCTTGCTTGACCGTTCCATCGATGTGAAAGACAAAtc > 1:2142988/1‑69 (MQ=255)aaaaGAGGCGAAAGATGCCGAAATACCGGTATTCTTGCTCGATCGTTCCATTGATGTGAAAGACAAAtc > 1:1249944/1‑69 (MQ=255)aaaaGAGGCGAAAGATGCAGAAATCCCGGTATTCTTGCTCGAt > 1:3189473/1‑43 (MQ=255)aaaaGAGGCGAAAGATGACGAAATCCCGGTATTCTTGCTCGATCGTTCCATAGATGTGAAAGACAAAt > 1:2915436/1‑68 (MQ=255) gagGCGAAAGATGCCGAAATCCCGGTATTCTTGCTCGATCGTTCCATTGATGTGAAAGACAAAtctctc < 1:2478787/69‑1 (MQ=255) gagGCGAAAGATGCCGAAATCCCGGTATTCTTGCTCGATCGTTCCATTGATGTGAAAGACAAAtctctc < 1:577110/69‑1 (MQ=255) gagGCGAAAGATGCCGAAATCCCGGTATTCTTGCTCGATCGTTCCATTGATGTGAAAGACAAAtctctc < 1:1884170/69‑1 (MQ=255) gagGCGAAAGATGCCGAAATCCCGGTATTCTTGCTCGATCGTTCCATTGATGTGAAAGACAAAtctctc < 1:1823933/69‑1 (MQ=255) ggCGAAAGATGCCGAAATCCCGGTATTCTTGCTCGATCGTTCCAtt < 1:379015/46‑1 (MQ=255) ggCGAAAGATGCCGAAATCCCGGTATTCTTGCTCGATCGTTCCAtt < 1:2327048/46‑1 (MQ=255) ggCGAAAGATGCCGAAATCCCGGTATTCTTGCTCGATCGTTCCAtt < 1:2304811/46‑1 (MQ=255) ggCGAAAGATGCCGAAATCCCGGTATTCTTGCTCGATCGTTCCAtt < 1:2993751/46‑1 (MQ=255) ggCGAAAGATGCCGAAATCCCGGTATTCTTGCTCGATCGTTCCAtt < 1:1795354/46‑1 (MQ=255) ggCGAAAGATGCCGAAATCCCGGTATTCTTGCTCGATCGTTCCAtt < 1:543908/46‑1 (MQ=255) ggCGAAAGATGCCGAAATCCCGGTATTCTTGCTCGATCGTTCCAtt < 1:1898687/46‑1 (MQ=255) ggCGAAAGATGCCGAAATCCCGGTATTCTTGCTCGATCGTTCCAtt < 1:685507/46‑1 (MQ=255) ggCGAAAGATGCCGAAATCCCGGTATTCTTGCTCGATCGTTCCAtg < 1:1967305/46‑2 (MQ=255) ggCGAAAGATGCCGAAATCCCGGTATTCTTGCTCGATCGTTCCATTGATGTGAAAGACAAATCTCTCta < 1:1486683/69‑1 (MQ=255) ggCGAAAGATGCCGAAATCCCGGTATTCTTGCTCGATCGTTCCATTGATGTGAAAGACAAATCTCTCta < 1:488498/69‑1 (MQ=255) ggCGAAAGATGCCGAAATCCCGGTATTCTTGCTCGATCGTTCCATTGATGTGAAAGACAAATCTCTCta < 1:807931/69‑1 (MQ=255) ggCGAAAGATGCCGAAATCCCGGTATTCTTGCTCGATCGTTCCATTGATGTGAAAGACAAATCTCTCta < 1:1348079/69‑1 (MQ=255) ggCGAAAGATGACGAAATCCCGGTATTCTTGCTCGATCGTTCCAtt < 1:3197667/46‑1 (MQ=255) gCGAAAGATGCCGAAATCCCGGTATTCTTGCTCGATCGTTCCAtt < 1:1565902/45‑1 (MQ=255) tGCCGAAATCCCGGTATTCTTGCTCGATCGTTCCATTGATGTGAAAGACAAATCTCTCTATATGaccac > 1:1434670/1‑69 (MQ=255) gCCGATATCCCGGTCTTCTTGCTTGACCGTTCCATCGATGTGAAAGACAAATCTCTCTATATGaccacc < 1:2289776/69‑1 (MQ=255) gCCGAAATCCCGGTCTTCTTGCTTGACCGTTCCATCGATGTGAAAGACAAATCTCTCTATATGaccacc < 1:3322186/69‑1 (MQ=255) gCCGAAATCCCGGTCTTCTTGCTTGACCGTTCCATCGATGTGAAAGACAAATCTCTCTATATGaccacc < 1:1796171/69‑1 (MQ=255) gCCGAAATCCCGGTCTTCTTGCTTGACCGTTCCATCGATGTGAAAGACAAATCTCTCTATATGaccacc < 1:433441/69‑1 (MQ=255) gCCGAAATCCCGGTCTTCTTGCTTGACCGTTCCATCGATGTGAAAGACAAATCTCTCTATATGaccacc < 1:884555/69‑1 (MQ=255) gCCGAAATCCCGGTCTTCTTGCTTGACCGTTCCATCGATGTGAAAGACAAATCTCTCTATATGaccacc < 1:105863/69‑1 (MQ=255) gCCGAAATCCCGGTCTTCTTGCTTGACCGTTCCATCGATGTGAAAGACAAATCTCTCTATATGaccacc < 1:2581896/69‑1 (MQ=255) gCCGAAATCCCGGTCTTCTTGCTTGACCGTTCCATCGATGTGAAAGACAAATCTCTCTATATGaccacc < 1:1892750/69‑1 (MQ=255) gCCGAAATCCCGGTCTTCTTGCTTGACCGTTCCATCGATGTGAAAGACAAATCTCTCTATATGaccacc < 1:194618/69‑1 (MQ=255) gCCGAAATCCCGGTCTTCTTGCTTGACCGTTCCATCGATGTGAAAGACAAATCTCTCTATATGaccacc < 1:2209042/69‑1 (MQ=255) gCCGAAATCCCGGTATTCTTGCTCGATCGTTCCATTGATGTGAGAGACAAATCTCTCTATATGaccacc > 1:2144617/1‑69 (MQ=255) ccGAAATCCCGGTCTTCTTGCTTGACCGTTCCATCGATGTGAAAGACAAATCTCTCTATATGaccacc < 1:1007700/68‑1 (MQ=255) ccGAAATCCCGGTCTTCTTGCTTGACCGTTCCATCGATGTGAAAGACAAATCTCTCTATATGaccacc < 1:2178567/68‑1 (MQ=255) gAAATCCCGGTATTCTTGCTCGATCGTTCCATTGATGTGAAAGACAAATCTCTCTATATGACCACCGt < 1:14747/68‑1 (MQ=255) gAAATCCCGGTATTCTTGCTCGATCGTTCCATTGATGTGAAAGACAAATCTCTCTATATGACCACCGTc < 1:1596442/69‑1 (MQ=255) aaaTCCCGGTCTTCTTGCTTGACCGTTCCATCGATGTGAAAGACAAATCTCTCTATATGACCACCGtta > 1:1024553/1‑67 (MQ=255) aaaTCCCGGTCTTCTTGCTTGACCGTTCCATCGATGTGAAAGACAAATCTCTCTATATGACCACCGtta > 1:1063370/1‑67 (MQ=255) aaaTCCCGGTCTTCTTGCTTGACCGTTCCATCGATGTGAAAGACAAATCTCTCTATATGACCACCGtta > 1:301449/1‑67 (MQ=255) aaaTCCCGGTCTTCTTGCTTGACCGTTCCATCGATGTGAAAGACAAATCTCTCTATATGACCACCGtta > 1:2193802/1‑67 (MQ=255) gTATTCTTGCTCGATCGTTCCATTGATGTGAAAGACAAATCTCTCTATATGACCACCGt < 1:2229149/59‑1 (MQ=255) ttCTTGCTCGATCGTTCCATTGATGTGAAAGACAAATCTCTCTATATGACCACCGTCACTGCCGacaac > 1:80789/1‑69 (MQ=255) ttCTTGCTCGATCGTTCCATTGATGTGAAAGACAAATCTCTCTATATGACCACCGTCACTGCCGacaac > 1:147307/1‑69 (MQ=255) ttCTTGCTCGATCGTTCCATTGATGTGAAAGACAAATCTCTCTATATGACCACCGTCACTGCCGacaac > 1:3125140/1‑69 (MQ=255) ttCTTGCTCGATCGTTCCATTGATGTGAAAGACAAATCTCTCTATATGACCACCGTCACTGCCGacaac > 1:3126726/1‑69 (MQ=255) cTTGCTCGATCGTTTCATTGATGTGAAAGACAAATCTCTCTATATGACCACCGTc < 1:2434118/55‑1 (MQ=255) cTTGCTCGATCGTTCCATTGATGTGAAAGACTAATCTCTCTATATGACCACCGTCACTGCCGACAACAt > 1:2499892/1‑69 (MQ=255) cTTGCTCGATCGTTCCATTGATGTGAAAGACAAAtctctc > 1:2758008/1‑40 (MQ=255) cTTGCTCGATCGTTCCATTGATGTGAAAGACAAATCTCTCTATATGACCACCGTc < 1:1221334/55‑1 (MQ=255) cTTGCTCGATCGTTCCATTGATGTGAAAGACAAATCTCTCTATATGACCACCGTc < 1:2662962/55‑1 (MQ=255) cTTGCTCGATCGTTCCATTGATGTGAAAGACAAATCTCTCTATATGACCACCGTc < 1:2365352/55‑1 (MQ=255) cTTGCTCGATCGTTCCATTGATGTGAAAGACAAATCTCTCTATATGACCACCGTc < 1:121427/55‑1 (MQ=255) cTTGCTCGATCGTTCCATTGATGTGAAAGACAAATCTCTCTATATGACCACCGTc < 1:3200434/55‑1 (MQ=255) cTTGCTCGATCGTTCCATTGATGTGAAAGACAAATCTCTCTATATGACCACCGTc < 1:501516/55‑1 (MQ=255) cTTGCTCGATCGTTCCATTGATGTGAAAGACAAATCTCTCTATATGACCACCGTc < 1:2118818/55‑1 (MQ=255) cTTGCTCGATCGTTCCATTGATGTGAAAGACAAATCTCTCTATATGACCACCGTc < 1:473807/55‑1 (MQ=255) cTTGCTCGATCGTTCCATTGATGTGAAAGACAAATCTCTCTATATGACCACCGTc < 1:1283920/55‑1 (MQ=255) cTTGCTCGATCGTTCCATTGATGTGAAAGACAAATCTCTCTATATGACCACCGTc < 1:365997/55‑1 (MQ=255) cTTGCTCGATCGTTCCATTGATGTGAAAGACAAATCTCTCTATATGACCACCGTc < 1:135363/55‑1 (MQ=255) cTTGCTCGATCGTTCCATTGATGTGAAAGACAAATCTCTCTATATGACCACCGTc < 1:422150/55‑1 (MQ=255) cTTGCTCGATCGTTCCATTGATGTGAAAGACAAATCTCTCTATATGACCACCGTCa > 1:2997748/1‑56 (MQ=255) cTTGCTCGATCGTTCCATTGATGTGAAAGACAAATCTCTCTATATGACCACCGTCACTGCCGacaaca > 1:2425988/1‑68 (MQ=255) cTTGCTCGATCGTTCCATTGATGTGAAAGACAAATCTCTCTATATGACCACCGTCACTGCCGacaaca > 1:1940302/1‑68 (MQ=255) cTTGCTCGATCGTTCCATTGATGTGAAAGACAAATCTCTCTATATGACCACCGTCACTGCCGacaaca > 1:2595487/1‑68 (MQ=255) cTTGCTCGATCGTTCCATTGATGTGAAAGACAAATCTCTCTATATGACCACCGTCACTGCCGACAACAt > 1:621220/1‑69 (MQ=255) cTTGCTCGATCGTTCCATTGATGTGAAAGACAAATCTCTCTATATGACCACCGTCACTGCCGACAACAt > 1:3252916/1‑69 (MQ=255) cTTGCTCGATCGTTCCATTGATGTGAAAGACAAATCTCTCTATATGACCACCGTCACTGCCGACAACAt > 1:811947/1‑69 (MQ=255) cTTGCTCGATCGTTCCATTGATGTGAAAGACAAATCTCTCTATATGACCACCGTCACTGCCGACAACAt > 1:2828904/1‑69 (MQ=255) cTTGCTCGATCGTTCCATTGATGTGAAAGACAAATCTCTCTATATGACCACCGTCACTGCCGACAACAt > 1:1997068/1‑69 (MQ=255) cTTGCTCGATCGTTCCATTGATGTGAAAGACAAATCTCTCTATATGACCACCGTCACTGCCGACAACAt > 1:1088101/1‑69 (MQ=255) cTTGCTCGATCGTTCCATTGATGTGAAAGACAAATCTCTCTATATGACCACCGTCACTGCCGACAACAt > 1:624381/1‑69 (MQ=255) cTTGCTCGATCGTTCCATTGATGTGAAAGACAAATCTCTCTATATGACCACCGTCACTGCCGACAACAt > 1:593150/1‑69 (MQ=255) cTTGCTCGATCGTTCCATTGATGTGAAAGACAAATCTCTCTATATGACCACCGTCACTGCCGACAACAt > 1:2008276/1‑69 (MQ=255) cTTGCTCGATCGTTCCATTGATGTGAAAGACAAATCTCTCTATATGACCACCGTCACTGCCGACAACAt > 1:512736/1‑69 (MQ=255) cTTGCTCGATCGTTCCATTGATGTGAAAGACAAATCTCTCTATATGACCACCGTCACTGCCGACAACAt > 1:3059372/1‑69 (MQ=255) cTTGCTCGATCGTTCCATTGATGTGAAAGACAAATCTCTCTATATGACCACCGTCACTGCCGACAACAt > 1:414379/1‑69 (MQ=255) cTTGCTCGATCGTTCCATTGATGTGAAAGACAAATCTCTCTATATGACCACCGTCACTGCCGACAACAt > 1:1630022/1‑69 (MQ=255) cTTGCTCGATCGTTCCATTGATATGAAAGACAAATCTCTCTATATGACCACCGTc < 1:109484/55‑1 (MQ=255) | AAAAGAGGCGAAAGATGCCGAAATCCCGGTATTCTTGCTCGATCGTTCCATTGATGTGAAAGACAAATCTCTCTATATGACCACCGTCACTGCCGACAACAT > minE/2891636‑2891737 |
| Alignment Legend |
|---|
Aligned base mismatch/match (shaded by quality score): ATCG/ATCG < 3 ≤ ATCG/ATCG < 14 ≤ ATCG/ATCG < 32 ≤ ATCG/ATCG < 36 ≤ ATCG/ATCG |
Unaligned base: atcg Masked matching base: atcg Alignment gap: ‑ Deleted base: ‑ |