Predicted mutation
evidence seq id position mutation freq annotation gene description
RA minE 2,891,872 A→G 19.4% K176R (AAG→AGG)  ytfQ → predicted sugar transporter subunit

Read alignment evidence...
  seq id position ref new freq score (cons/poly) reads annotation genes product
*minE2,891,8720AG19.4% 67.9 / 8.5 46K176R (AAG→AGG) ytfQpredicted sugar transporter subunit
Reads supporting (aligned to +/- strand):  ref base A (8/29);  new base G (4/5);  total (12/34)
Fisher's exact test for biased strand distribution p-value = 2.11e-01
Kolmogorov-Smirnov test that lower quality scores support variant p-value = 8.60e-01

GCTGCAGGGCACCGTTGGGGCCAGCGTCGCCATTGACCGTAAGAAAGGCTTTGCCGAAGCCATTAAGAATGCGCCAAATATCAAAATCATCCGCTCGCAGTCAGGTGACTTCACCCGCAGTAAAGGCAAAGAA  >  minE/2891807‑2891939
                                                                 |                                                                   
gCTGCAGGGCACCGTTGGGGCCAGCGTCGCCATTGACCGTAAGAAAGGCTTTGCCGAAGCCATTAAg                                                                    <  1:310118/67‑1 (MQ=255)
gCTGCAGGGCACCGTTGGGGCCAGCGTCGCCATTGACCGTAAGAAAGGCTTTGCCGAAGCCATTAAg                                                                    <  1:2288733/67‑1 (MQ=255)
gCTGCAGGGCACCGTTGGGGCCAGCGTCGCCATTGACCGTAAGAAAGGCTTTGCCGAAGCCATTAAg                                                                    <  1:3189204/67‑1 (MQ=255)
gCTGCAGGGCACCGTTGGGGCCAGCGTCGCCATTGACCGTAAGAAAGGCTTTGCCGAAGCCATTAAg                                                                    <  1:3159443/67‑1 (MQ=255)
gCTGCAGGGCACCGTTGGGGCCAGCGTCGCCATTGACCGTAAGAAAGGCTTTGCCGAAGCCATTAAg                                                                    <  1:62665/67‑1 (MQ=255)
gCTGCAGGGCACCGTTGGGGCCAGCGTCGCCATTGACCGTAAGAAAGGCTTTGCCGAAGCCATTAAg                                                                    <  1:1853095/67‑1 (MQ=255)
gCTGCAGGGCACCGTTGGGGCCAGCGTCGCCATTGACCGTAAGAAAGGCTTTGCCGAAGCCATTAAg                                                                    <  1:752756/67‑1 (MQ=255)
gCTGCAGGGCACCGTTGGGGCCAGCGTCGCCATTGACCGTAAGAAAGGCTTTGCCGAAGCCATTAAg                                                                    <  1:1462046/67‑1 (MQ=255)
gCTGCAGGGCACCGTTGGGGCCAGCGTCGCCATTGACCGTAAGAAAGGCTTTGCCGAAGCCATTAAg                                                                    <  1:2852955/67‑1 (MQ=255)
   gCAGGGCACCGTTGGGGCCAGCGTCGCCATTGACCGTAAGAAAGGCTTTGCCGAAGCCATTAAGAATgc                                                               >  1:2642348/1‑69 (MQ=255)
   gCAGGGCACCGTTGGGGCCAGCGTCGCCATTGACCGTAAGAAAGGCTTTGCCGAAGCCATTAAGAATgc                                                               >  1:3047135/1‑69 (MQ=255)
   gCAGGGCACCGTTGGGGCCAGCGTCGCCATTGACCGTAAGAAAGGCTTTGCCGAAGCCATTAAGAATgc                                                               >  1:56376/1‑69 (MQ=255)
                     cAGCGTCGCCATTGACCGTAAGAAAGGCTTTGCCGAAGCCATTAAg                                                                    <  1:2394248/46‑1 (MQ=255)
                               aTTGACCGTAAGAAAGGCTTTGCCGAAGCCATTAGGAATGCGCCAAATATCAAAATTATCCGCTCGCa                                    >  1:1323833/1‑68 (MQ=255)
                               aTTGACCGTAAGAAAGGCTTTGCCGAAGCCATTAGGAATGCGCCAAATATCAAAATTATCCGCTCGCa                                    >  1:1770097/1‑68 (MQ=255)
                               aTTGACCGTAAGAAAGGCTTTGCCGAAGCCATTAGGAATGCGCCAAATATCAAAATTATCCGCTCGCa                                    >  1:2349398/1‑68 (MQ=255)
                               aTTGACCGTAAGAAAGGCTTTGCCGAAGCCATTAGGAATGCGCCAAATATCAAAATTATCCGATCGc                                     >  1:2898350/1‑67 (MQ=255)
                                  gACCGTAAGAAAGGCTTTGCCGAAGCCATTAAGAATGCGCCAAATATCAAAATCATCCGCTCGCAGTCa                                >  1:3396185/1‑69 (MQ=255)
                                  gACCGTAAGAAAGGCTTTGCCGAAGCCATTAAGAATGCGCCAAATATCAAAATCATCCGCTCGCAGTCa                                >  1:1465997/1‑69 (MQ=255)
                                  gACCGTAAGAAAGGCTTTGCCGAAGCCATTAAGAATGCGCCAAATATCAAAATCATCCGCTCGCAGTCa                                >  1:2450515/1‑69 (MQ=255)
                                  gACCGTAAGAAAGGCTTTGCCGAAGCCATTAAGAATGCGCCAAATATCAAAATCATCCGCTCGCAGTCa                                >  1:2432093/1‑69 (MQ=255)
                                  gACCGTAAGAAAGGCTTTGCCGAAGCCATTAAGAATGCGCCAAATATCAAAATCATCCGCTCGCAGTCa                                >  1:2337347/1‑69 (MQ=255)
                                     cGTAAGAAAGGCTTTGCCGAAGCCATTAAGAATGCGCCAAATATCAAAATCATCCGCTCGCAGTCAGGt                             <  1:2616307/69‑1 (MQ=255)
                                       tAAGAAAGGCTTTGCCGAAGCCATTAAGAATGCGCCAAATATCAAAATCATCCGCTCGCAGTCAGGTGa                           <  1:3398385/69‑1 (MQ=255)
                                             aGGCTTTGCCGAAGCCATTAGGAATGCGCCAAATATCAAAATTATCCGCTCGCAGTCAGGTGACTTCAc                     <  1:577298/69‑1 (MQ=255)
                                             aGGCTTTGCCGAAGCCATTAGGAATGCGCCAAATATCAAAATTATCCGCTCGCAGTCAGGTGACTTCAc                     <  1:1113854/69‑1 (MQ=255)
                                             aGGCTTTGCCGAAGCCATTAGGAATGCGCCAAATATCAAAATTATCCGCTCGCAGTCAGGTGACTTCAc                     <  1:798402/69‑1 (MQ=255)
                                             aGGCTTTGCCGAAGCCATTAGGAATGCGCCAAATATCAAAATTATCCGCTCGCAGTCAGGTGACTTCAc                     <  1:685410/69‑1 (MQ=255)
                                             aGGCTTTGCCGAAGCCATTAGGAATGCGCCAAATATCAAAATTATCCGCTCGCAGTCAGGTGACTTCAc                     <  1:573285/69‑1 (MQ=255)
                                                      cGAAGCCATTAAGAATGCGCCAAATATCAAAATCATCCGCTCGCAGTCAGGTGACTTCACCCGCAGTa             <  1:2298986/68‑1 (MQ=255)
                                                      cGAAGCCATTAAGAATGCGCCAAATATCAAAATCATCCGCTCGCAGTCAGGTGACTTCACCCGCAGTa             <  1:1165089/68‑1 (MQ=255)
                                                      cGAAGCCATTAAGAATGCGCCAAATATCAAAATCATCCGCTCGCAGTCAGGTGACTTCACCCGCAGTa             <  1:845200/68‑1 (MQ=255)
                                                      cGAAGCCATTAAGAATGCGCCAAATATCAAAATCATCCGCTCGCAGTCAGGTGACTTCACCCGCAGTa             <  1:160421/68‑1 (MQ=255)
                                                      cGAAGCCATTAAGAATGCGCCAAATATCAAAATCATCCGCTCGCAGTCAGGTGACTTCACCCGCAGTa             <  1:1636678/68‑1 (MQ=255)
                                                      cGAAGCCATTAAGAATGCGCCAAATATCAAAATCATCCGCTCGCAGTCAGGTGACTTCACCCGCAGTa             <  1:1875025/68‑1 (MQ=255)
                                                      cGAAGCCATTAAGAATGCGCCAAATATCAAAATCATCCGCTCGCAGTCAGGTGACTTCACCCGCAGTa             <  1:3185207/68‑1 (MQ=255)
                                                      cGAAGCCATTAAGAATGCGCCAAATATCAAAATCATCCGCTCGCAGTAAGGTGACTTCACCCGCAGTa             <  1:2653808/68‑1 (MQ=255)
                                                       gAAGCCATTAAGAATGCGCCAAATATCAAAATCATCCGCTCGCAGTCAGGTGACTTCACCCGCAGTa             <  1:923442/67‑1 (MQ=255)
                                                               tAAGAATGCGGCAAATATCAAAATCATCCGCTCGCAGTCAGGTg                            <  1:2060538/44‑1 (MQ=255)
                                                               tAAGAATGCGCCAAATATCAAAATCATCCGCTCGCAGTCAGGTg                            <  1:3310053/44‑1 (MQ=255)
                                                               tAAGAATGCGCCAAATATCAAAATCATCCGCTCGCAGTCAGGTg                            <  1:412719/44‑1 (MQ=255)
                                                               tAAGAATGCGCCAAATATCAAAATCATCCGCTCGCAGTCAGGTg                            <  1:2380919/44‑1 (MQ=255)
                                                               tAAGAATGCGCCAAATATCAAAATCATCCGCTCGCAGTCAGGTg                            <  1:2260485/44‑1 (MQ=255)
                                                               tAAGAATGCGCCAAATATCAAAATCATCCGCTCGCAGTCAGGTg                            <  1:2167538/44‑1 (MQ=255)
                                                               tAAGAATGCGCCAAATATCAAAATCATCCGCTCGCAGTCAGGTg                            <  1:2028731/44‑1 (MQ=255)
                                                               tAAGAATGCGCCAAATATCAAAATCATCCGCTCGCAGTCAGGTg                            <  1:1441728/44‑1 (MQ=255)
                                                                aaGAATGCGCCAAATATCAAAATCATCCGCTCGCAGTCAGGt                             <  1:515854/42‑1 (MQ=255)
                                                                aaGAATGCGCCAAATATCAAAATCATCCGCTCGCAGTCAGGt                             <  1:481001/42‑1 (MQ=255)
                                                                aaGAATGCGCCAAATATCAAAATCATCCGCTCGCAGTCAGGt                             <  1:1070011/42‑1 (MQ=255)
                                                                aaGAATGCGCCAAATATCAAAATCATCCGCTCGCAGTCAGGt                             <  1:923519/42‑1 (MQ=255)
                                                                aaGAATGCGCCAAATATCAAAATCATCCGCTCGCAGTCAGGt                             <  1:2586266/42‑1 (MQ=255)
                                                                aaGAATGCGCCAAATATCAAAATCATCCGCTCGCAGTCAGGt                             <  1:226106/42‑1 (MQ=255)
                                                                aaGAATGCGCCAAATATCAAAATCATCCGCTCGCAGTCAGGt                             <  1:1879387/42‑1 (MQ=255)
                                                                aaGAATGCGCCAAATATCAAAATCATCCGCTCGCAGTCAGGt                             <  1:180724/42‑1 (MQ=255)
                                                                aaGAATGCGCCAAATATCAAAATCATCCGCTCGCAGTCAGGTGACTTc                       >  1:878378/1‑48 (MQ=255)
                                                                aaGAATGCGCCAAATATCAAAATCATCCGCTCGCAGTCAGGTGACTTCACCCGCAGTAAAGGCAaagaa  >  1:3298294/1‑69 (MQ=255)
                                                                aaGAATGCGCCAAATATCAAAATCATCCGCTCGCAGTCAGGTGACTTCACCCGCAGTAAAGGCAaagaa  >  1:3155294/1‑69 (MQ=255)
                                                                aaGAATGCGCCAAATATCAAAATCATCCGCTCGCAGTCAGGTGACTTCACCCGCAGTAAAGGCAaagaa  >  1:1473188/1‑69 (MQ=255)
                                                                aaGAATGCGCCAAATATCAAAATCATCCGCTCGCAGTCAGGTGACTTCACCCGCAGTAAAGGCAaagaa  >  1:1290446/1‑69 (MQ=255)
                                                                aaGAATGCGCCAAATATCAAAATCATCCGCTCGCAGTCAGGTGACTTCACCCGCAGTAAAGGCAaagaa  >  1:111336/1‑69 (MQ=255)
                                                                aaGAATGCGCCAAATATCAAAATCAACCGCTCGCAGTCAGGt                             <  1:1222836/42‑1 (MQ=255)
                                                                 aGAATGCGCCAAATATCAAAATCATCCGCTCGCAGTCAGGt                             <  1:3067879/41‑1 (MQ=255)
                                                                 aGAATGCGCCAAATATCAAAATCATCCGCTCGCAGTCAGGt                             <  1:1264527/41‑1 (MQ=255)
                                                                 |                                                                   
GCTGCAGGGCACCGTTGGGGCCAGCGTCGCCATTGACCGTAAGAAAGGCTTTGCCGAAGCCATTAAGAATGCGCCAAATATCAAAATCATCCGCTCGCAGTCAGGTGACTTCACCCGCAGTAAAGGCAAAGAA  >  minE/2891807‑2891939

Alignment Legend
Aligned base mismatch/match (shaded by quality score): ATCG/ATCG < 3 ≤ ATCG/ATCG < 14 ≤ ATCG/ATCG < 32 ≤ ATCG/ATCG < 36 ≤ ATCG/ATCG
Unaligned base: atcg    Masked matching base: atcg    Alignment gap:     Deleted base: