Predicted mutation
evidence seq id position mutation freq annotation gene description
RA minE 2,894,125 A→C 45.3% I56I (ATA→ATC ytfT → predicted sugar transporter subunit

Read alignment evidence...
  seq id position ref new freq score (cons/poly) reads annotation genes product
*minE2,894,1250AC45.3% 0.5 / 64.1 59I56I (ATA→ATCytfTpredicted sugar transporter subunit
Reads supporting (aligned to +/- strand):  ref base A (25/7);  new base C (18/8);  total (44/15)
Fisher's exact test for biased strand distribution p-value = 5.50e-01
Kolmogorov-Smirnov test that lower quality scores support variant p-value = 4.23e-01

TAGCCTGGTAGCCCCGCATTTCTGGCAGGTGGTGCTTCAGGATGGGCGTTTGTTCGGTAGCCCCATAGACATTCTTAACCGTGCAGCTCCCGTTGCGTTACTGGCGATTGGCATGACGCTGGTGATCGCCACCG  >  minE/2894059‑2894192
                                                                  |                                                                   
tAGCCTGGTAGCCCCGCATTTCTGGCAGGTGGTGCTTCAGGATGGGCGTTTGTTCGGTAGCCCCATAGa                                                                   <  1:2014240/69‑1 (MQ=255)
tAGCCTGGTAGCCCCGCATTTCTGGCAGGTGGTGCTTCAGGATGGGCGTTTGTTCGGTAGCCCCATAGa                                                                   <  1:2263952/69‑1 (MQ=255)
  gCCTGGTAGCCCCGCATTTCTGGCAGGTGGTGCTTCAGGATGGGCGTTTGTTCGGTAGCCCCATAGa                                                                   <  1:1622114/67‑1 (MQ=255)
  gCCTGGTAGCCCCGCATTTCTGGCAGGTGGTGCTTCAGGATGGGCGTTTGTTCGGTAGCCCCATAGAc                                                                  >  1:1871322/1‑68 (MQ=255)
  gCCTGGTAGCCCCGCATTTCTGGCAGGTGGTGCTTCAGGATGGGCGTTTGTTCGGTAGCCCCATAGAc                                                                  >  1:1611536/1‑68 (MQ=255)
  gCCTGGTAGCCCCGCATTTCTGGCAGGTGGTGCTTCAGGATGGGCGTTTGTTCGGTAGCCCCATAGAc                                                                  >  1:2706389/1‑68 (MQ=255)
  gCCTGGTAGCCCCGCATTTCTGGCAGGTGGTGCTTCAGGATGGGCGTTTGTTCGGTAGCCCCATAGACa                                                                 >  1:1006946/1‑69 (MQ=255)
  gCCTGGTAGCCCCGCATTTCTGGCAGGTGGTGCTTCAGGATGGGCGTTTGTTCGGTAGCCCCATAGACa                                                                 >  1:2465265/1‑69 (MQ=255)
  gCCTGGTAGCCCCGCATTTCTGGCAGGTGGTGCTTCAGGATGGGCGTTTGTTCGGTAGCCCCATAGACa                                                                 >  1:2699849/1‑69 (MQ=255)
                cATTTCTGGCAGGTGGTGCTTCAGGATGGGCGTTTGTTCGGTAGCCCTATCGACATTCTTAACCGTGcg                                                   <  1:2704275/69‑2 (MQ=255)
                cATTTCTGGCAGGTGGTGCTTCAGGATGGGCGTTTGTTCGGTAGCCCTATCGACATTCTTAACCGTGcg                                                   <  1:1494866/69‑2 (MQ=255)
                cATTTCTGGCAGGTGGTGCTTCAGGATGGGCGTTTGTTCGGTAGCCCTATCGACATTCTTAACCGTGcg                                                   <  1:2477918/69‑2 (MQ=255)
                cATTTCTGGCAGGTGGTGCTTCAGGATGGGCGTTTGTTCGGTAGCCCTATCGACATTCTTAACCGTGcg                                                   <  1:1207841/69‑2 (MQ=255)
                cATTTCTGGCAGGTGGTGCTTCAGGATGGGCGTTTGTTCGGTAGCCCTATCGACATTCTTAACCGTGcg                                                   <  1:2345200/69‑2 (MQ=255)
                cATTTCTGGCAGGTGGTGCTTCAGGATGGGCGTTTGTTCGGTAGCCCTATCGACATTCTTAACCGTGcg                                                   <  1:337061/69‑2 (MQ=255)
                cATTTCTGGCAGGTGGTGCTTCAGGATGGGCGTTTGTTCGGTAGCCCTATCGACATTCTTAACCGTGcg                                                   <  1:2340150/69‑2 (MQ=255)
                cATTTCTGGCAGGTGGTGCTTCAGGATGGGCGTTTGTTCGGTAGCCCTATCGACATTCTTAACCGTGcg                                                   <  1:1942150/69‑2 (MQ=255)
                    tCTGGCAGGTGGTGCTTCAGGATGGGCGTTTGTTCGGTAGCCCCATa                                                                     >  1:1382040/1‑47 (MQ=255)
                    tCTGGCAGGTGGTGCTTCAGGATGGGCGTTTGTTCGGTAGCCCCATa                                                                     >  1:3347683/1‑47 (MQ=255)
                    tCTGGCAGGTGGTGCTTCAGGATGGGCGTTTGTTCGGTAGCCCCATa                                                                     >  1:1634691/1‑47 (MQ=255)
                    tCTGGCAGGTGGTGCTTCAGGATGGGCGTTTGTTCGGTAGCCCCATAGACATTCTTAACCGTGCAGccc                                               >  1:2783178/1‑67 (MQ=255)
                    tCTGGCAGGTGGTGCTTCAGGATGGGCGTTTGTTCGGTAGCCCCATAGACATTCTTAACCGTGCAGCTc                                               >  1:2917902/1‑69 (MQ=255)
                    tCTGGCAGGTGGTGCTTCAGGATGGGCGTTTGTTCGGTAGCCCCATAGACATTCTTAACCGTGCAGCTc                                               >  1:1208387/1‑69 (MQ=255)
                    tCTGGCAGGTGGTGCTTCAGGATGGGCGTTTGTTCGGTAGCCCCATAGACATTCTTAACCGTGCAGCTc                                               >  1:3372189/1‑69 (MQ=255)
                    tCTGGCAGGTGGTGCTTCAGGATGGGCGTTTGTTCGGTAGACCCATa                                                                     >  1:1084516/1‑47 (MQ=255)
                        gCAGGTGGTGCTTCAGGATGGGCGTTTGTTCGGTAGCCCTATCGACATTCTTAAGCGTGCGGCcccc                                             >  1:631407/1‑67 (MQ=255)
                        gCAGGTGGTGCTTCAGGATGGGCGTTTGTTCGGTAGCCCTATCGACATTCTTAACCGTGCGGCCCCCGt                                           >  1:71112/1‑69 (MQ=255)
                        gCAGGTGGTGCTTCAGGATGGGCGTTTGTTCGGTAGCCCTATCGACATTCTTAACCGTGCGGCCCCCGt                                           >  1:3327291/1‑69 (MQ=255)
                        gCAGGTGGTGCTTCAGGATGGGCGTTTGTTCGGTAGCCCTATCGACATTCTTAACCGTGCGGCCCCCGt                                           >  1:883414/1‑69 (MQ=255)
                        gCAGGTGGTGCTTCAGGATGGGCGTTTGTTCGGTAGCCCTATCGACATTCTTAACCGTGCGGCCCCCGt                                           >  1:350671/1‑69 (MQ=255)
                        gCAGGTGGTGCTTCAGGATGGGCGTTTGTTCGGTAGCCCTATCGACATTCTTAACCGTGCGGCCCCCGt                                           >  1:375552/1‑69 (MQ=255)
                        gCAGGTGGTGCTTCAGGATGGGCGTTTGTTCGGTAGCCCTATCGACATTCTTAACCGTGCGGCCCCCGt                                           >  1:1434948/1‑69 (MQ=255)
                        gCAGGTGGTGCTTCAGGATGGGCGTTTGTTCGGTAGCCCTATCGACATTCTTAACCGTGCGGCCCCCGt                                           >  1:2767019/1‑69 (MQ=255)
                        gCAGGTGGTGCTTCAGGATGGGCGTTTGTTCGGTAGCCCTATCGACATTCTTAACCGTGCGGCCCCCGt                                           >  1:2723486/1‑69 (MQ=255)
                        gCAGGTGGTGCTTCAGGATGGGCGTTTGTTCGGTAGCCCTATCGACATTCTTAACCGTGCGGCCCCCGt                                           >  1:1436308/1‑69 (MQ=255)
                        gCAGGTGGTGCTTCAGGATGGGCGTTTGTTCGGTAGCCCTATCGACATTCTTAACCGTGCGGCCCCCGt                                           >  1:410308/1‑69 (MQ=255)
                        gCAGGTGGTGCTTCAGGATGGGCGTTTGTTCGGTAGCCCTATCGACATTCTTAACCGTGCGGCCCCCGt                                           >  1:514776/1‑69 (MQ=255)
                        gCAGGTGGTGCTTCAGGATGGGCGTTTGTTCGGTAGCCCTATCGACATTCTTAACCGTGCGGCCCCCGt                                           >  1:5173/1‑69 (MQ=255)
                        gCAGGTGGTGCTTCAGGATGGGCGTTTGTTCGGTAGCCCTATCGACATTCTTAACCGTGCGGCCCCCGt                                           >  1:1549773/1‑69 (MQ=255)
                        gCAGGTGGTGCTTCAGGATGGGCGTTTGTTCGGTAGCCCTATCGACATTCTTAACCGTGCGGCCCCCGt                                           >  1:1686272/1‑69 (MQ=255)
                        gCAGGTGGTGCTTCAGGATGGGCGTTTGTTCGGTAGCCCTATCGACATTCTTAACCGTGCGGCCCCCGt                                           >  1:1934706/1‑69 (MQ=255)
                        gCAGGTGGTGCTTCAGGATGGGCGTCTGTTCGGTAGCCCTATCGACATTCTTAACCGTGCGGCCCCCGt                                           >  1:1104598/1‑69 (MQ=255)
                        gCAGGTGGTGCTTCAGGATGGGCGCTTGTTCGGTAGCCCTATCGACATTCTTAACCGTGCGGCCCCCGt                                           >  1:2431907/1‑69 (MQ=255)
                             tggtgCTTCAGGATGGGCGTTTGTTCGGTAGCCCCATAGACATTCTTAACCGTGCAGCTCCCGTTGCg                                       >  1:2450529/1‑68 (MQ=255)
                             tggtgCTTCAGGATGGGCGTTTGTTCGGTAGCCCCATAGACATTCTTAACCGTGCAGCTCCCGTTGCGt                                      >  1:841008/1‑69 (MQ=255)
                              ggtgCTTCAGGATGGGCGTTTGTTCGGTAGCCCCATAGACATTCTTAACCGTGCAGCTCCCGTTGCGtt                                     >  1:2518551/1‑69 (MQ=255)
                               gtgCTTCAGGATGGGCGTTTGTTCGGTAGTCCCATAGACATTCTTAACCGTGCAGCTCCCGTTGCGTTa                                    >  1:2042719/1‑69 (MQ=255)
                               gtgCTTCAGGATGGGCGTTTGTTCGGTAGCCCCATAGACATTCTTAACCGTGCAGCTCCCGTTGCGTTa                                    >  1:964316/1‑69 (MQ=255)
                                  cTTCAGGATGGGCGTTTGTTCGGTAGCCCCATAGACATTCTTAACCGTGCAGCTCCCGTTGCGtt                                     >  1:3343511/1‑65 (MQ=255)
                                  cTTCAGGATGGGCGTTTGTTCGGTAGCCCCATAGACATTCTTAACCGTGCAGCTCCCGTTGCGtt                                     >  1:3189361/1‑65 (MQ=255)
                                  cTTCAGGATGGGCGTTTGTTCGGTAGCCCCATAGACATTCTTAACCGTGCAGCTCCCGTTGCGtt                                     >  1:1424904/1‑65 (MQ=255)
                                  cTTCAGGATGGGCGTTTGTTCGGTAGCCCCATAGACATTCTTAACCGTGCAGCTCCCGTTGCGtt                                     >  1:2891832/1‑65 (MQ=255)
                                  cTTCAGGATGGGCGTTTGTTCGGTAGCCCCATAGACATTCTTAACCGTGCAGCTCCCGTTGCGtt                                     >  1:2705621/1‑65 (MQ=255)
                                  cTTCAGGATGGGCGTTTGTTCGGTAGCCCCATAGACATTCTTAACCGTGCAGCTCCCGTTGCGtt                                     >  1:1479105/1‑65 (MQ=255)
                                  cTTCAGGATGGGCGTTTGTTCGGTAGCCCCATAGACATTCTTAACCGTGCAGCTCCCGTTGCGtt                                     >  1:1531134/1‑65 (MQ=255)
                                  cTTCAGGATGGGCGTTTGTTCGGTAGCCCCATAGACATTCTTAACCGTGCAGCTCCCGTTGCGtt                                     >  1:184492/1‑65 (MQ=255)
                                  cTTCAGGATGGGCGTTTGTTCGGTAGCCCCAT‑‑ACATTCTTAACCGTGCAGCTCCCGTTGCGtt                                     >  1:1281886/1‑63 (MQ=255)
                                              cGTTTGTTCGGTAGCCCCATAGACATTCTTAACCGTGCAGCTCCCGTTGCGTTACTGGCGATTGGCAt                      <  1:3181096/68‑1 (MQ=255)
                                              cGTTTGTTCGGTAGCCCCATAGACATTCTTAACCGTGCAGCTCCCGTTGCGTTACTGGCGATTGGCAt                      <  1:711990/68‑1 (MQ=255)
                                              cGTTTGTTCGGTAGCCCCATAGACATTCTTAACCGTGCAGCTCCCGTTGCGTTACTGGCGATTGGCAt                      <  1:1123215/68‑1 (MQ=255)
                                              cGTTTGTTCGGTAGCCCCATAGACATTCTTAACCGTGCAGCTCCCGTTGCGTTACTGGCGATTGGCAt                      <  1:2973952/68‑1 (MQ=255)
                                                                 tAGACATTCTTAACCGTGCAGCTCCCGTTGCGTTACTGGCGATTGGCATGACGCTGGTGATCGCCACCg  >  1:957788/1‑69 (MQ=255)
                                                                 tAGACATTCTTAACCGTGCAGCTCCCGTTGCGTTACTGGCGATTGGCATGACGCTGGTGATCGCCACCg  >  1:197326/1‑69 (MQ=255)
                                                                  |                                                                   
TAGCCTGGTAGCCCCGCATTTCTGGCAGGTGGTGCTTCAGGATGGGCGTTTGTTCGGTAGCCCCATAGACATTCTTAACCGTGCAGCTCCCGTTGCGTTACTGGCGATTGGCATGACGCTGGTGATCGCCACCG  >  minE/2894059‑2894192

Alignment Legend
Aligned base mismatch/match (shaded by quality score): ATCG/ATCG < 3 ≤ ATCG/ATCG < 27 ≤ ATCG/ATCG < 32 ≤ ATCG/ATCG < 36 ≤ ATCG/ATCG
Unaligned base: atcg    Masked matching base: atcg    Alignment gap:     Deleted base: