Predicted mutation
evidence seq id position mutation freq annotation gene description
RA minE 2,895,585 C→T 25.6% R207C (CGC→TGC)  yjfF → predicted sugar transporter subunit

Read alignment evidence...
  seq id position ref new freq score (cons/poly) reads annotation genes product
*minE2,895,5850CT25.6% 79.0 / 21.9 66R207C (CGC→TGC) yjfFpredicted sugar transporter subunit
Reads supporting (aligned to +/- strand):  ref base C (45/4);  new base T (6/11);  total (51/15)
Fisher's exact test for biased strand distribution p-value = 1.02e-05
Kolmogorov-Smirnov test that lower quality scores support variant p-value = 9.54e-01

CAGGTATACGCCATTGGCGGCAACGCAACGTCGGCGAATCTGATGGGGATTTCCACTCGCAGCACCACTATTCGCATTTATATGCTCTCCACCGGACTGGCAACGCTGGCGGGGATTGT  >  minE/2895528‑2895646
                                                         |                                                             
cAGGTATACGCCATTGGCGGCAACGCAACGTCGGCGAATCTGATGGGGATTTCCACTCgcagc                                                          >  1:479066/1‑63 (MQ=255)
cAGGTATACGCCATTGGCGGCAACGCAACGTCGGCGAATCTGATGGGGATTTCCACTCgcagc                                                          >  1:3211994/1‑63 (MQ=255)
cAGGTATACGCCATTGGCGGCAACGCAACGTCGGCGAATCTGATGGGGATTTCCACTCgcagc                                                          >  1:2703342/1‑63 (MQ=255)
cAGGTATACGCCATTGGCGGCAACGCAACGTCGGCGAATCTGATGGGGATTTCCACTCgcagc                                                          >  1:835088/1‑63 (MQ=255)
cAGGTATACGCCATTGGCGGCAACGCAACGTCGGCGAATCTGATGGGGATTTCCACTCgcagc                                                          >  1:252720/1‑63 (MQ=255)
cAGGTATACGCCATTGGCGGCAACGCAACGTCGGCGAATCTGATGGGGATTTCCACTCgcagc                                                          >  1:252082/1‑63 (MQ=255)
cAGGTATACGCCATTGGCGGCAACGCAACGTCGGCGAATCTGATGGGGATTTCCACTCgcagc                                                          >  1:1608217/1‑63 (MQ=255)
 aGGTATACGCCATTGGCGGCAACGCAACGTCGGCGAATCTGATGGGGATTTCCACTCGCAGCACCACt                                                    >  1:3105076/1‑68 (MQ=255)
 aGGTATACGCCATTGGCGGCAACGCAACGTCGGCGAATCTGATGGGGATTTCCACTCGCAGCACCACTa                                                   >  1:3287985/1‑69 (MQ=255)
 aGGTATACGCCATTGGCGGCAACGCAACGTCGGCGAATCTGATGGGGATTTCCACTCGCAGCACCACTa                                                   >  1:2471522/1‑69 (MQ=255)
 aGGTATACGCCATTGGCGGCAACGCAACGTCGGCGAATCTGATGGGGATTTCCACTCGCAGCACCACTa                                                   >  1:2410567/1‑69 (MQ=255)
 aGGTATACGCCATTGGCGGCAACGCAACGTCGGCGAATCTGAAGGGGATTTCCACTCGCAGCACCACTa                                                   >  1:1632983/1‑69 (MQ=255)
        cGCCATTGGCGGCAACGCAACGTCGGCGAATCTGATGGGGATTTCCACTCGCAGCACCACTATTCGCa                                             >  1:1111166/1‑68 (MQ=255)
        cGCCATTGGCGGCAACGCAACGTCGGCGAATCTGATGGGGATTTCCACTCGCAGCACCACTATTCGCa                                             >  1:428860/1‑68 (MQ=255)
        cGCCATTGGCGGCAACGCAACGTCGGCGAATCTGATGGGGATTTCCACTCGCAGCACCACTATTCGCa                                             >  1:3340025/1‑68 (MQ=255)
        cGCCATTGGCGGCAACGCAACGTCGGCGAATCTGATGGGGATTTCCACTCGCAGCACCACTATTCGCa                                             >  1:2099075/1‑68 (MQ=255)
        cGCCATTGGCGGCAACGCAACGTCGGCGAATCTGATGGGGATTTCCACTCGCAGCACCACTATTCGCa                                             >  1:1909067/1‑68 (MQ=255)
        cGCCATTGGCGGCAACGCAACGTCGGCGAATCTGATGGGGATTTCCACTCGCAGCACCACTATTCGCa                                             >  1:179854/1‑68 (MQ=255)
          ccATTGGCGGCAACGCAACGTCGGCAAACCTGATGGGGATTTTCACTTGCAGCACCACTATTCGCAtt                                           <  1:842929/68‑1 (MQ=255)
          ccATTGGCGGCAACGCAACGTCGGCAAACCTGATGGGGATTTCCACTTGCAGCACCACTATTCGCAtt                                           <  1:1943777/68‑1 (MQ=255)
          ccATTGGCGGCAACGCAACGTCGGCAAACCTGATGGGGATTTCCACTTGCAGCACCACTATTCGCAtt                                           <  1:1240496/68‑1 (MQ=255)
          ccATTGGCGGCAACGCAACGTCGGCAAACCTGATGGGGATTTCCACTTGCAGCACCACTATTCGCAtt                                           <  1:987600/68‑1 (MQ=255)
          ccATTGGCGGCAACGCAACGTCGGCAAACCTGATGGGGATTTCCACTTGCAGCACCACTATTCGCAtt                                           <  1:752191/68‑1 (MQ=255)
          ccATTGGCGGCAACGCAACGTCGGCAAACCTGATGGGGATTTCCACTTGCAGCACCACTATTCGCAtt                                           <  1:1484414/68‑1 (MQ=255)
          ccATTGGCGGCAACGCAACGTCGGCAAACCTGATGGGGATTTCCACTTGCAGCACCACTATTCGCAtt                                           <  1:912303/68‑1 (MQ=255)
          ccATTGGCGGCAACGCAACGTCGGCAAACCTGATGGGGATTTCCACTTGCAGCACCACTATTCGCAtt                                           <  1:1578840/68‑1 (MQ=255)
          ccATTGGCGGCAACGCAACGTCGGCAAACCTGATGGGGATTTCCACTTGCAGCACCACTATTCGCAtt                                           <  1:2474923/68‑1 (MQ=255)
          ccATTGGCAGCAACGCAACGTCGGCAAACCTGATGGGGATTTCCACTTGCAGCACCACTATTCGCAtt                                           <  1:2119448/68‑1 (MQ=255)
           cATTGGCGGCAACGCAACGTCGGCGAATCTGATGGGGATTTCCACTCGCAGCACCACTATTCTCATTta                                         <  1:443221/69‑1 (MQ=255)
           cATTGGCGGCAACGCAACGTCGGCGAATCTGATGGGGATTTCCACTCGCAGCACCACTATTCGCATTta                                         <  1:2115736/69‑1 (MQ=255)
               ggcggcAACGCAACGTCGGCGAATCTGATGGGGATTTCCACTCGCAGCACCACTATTCGCATTTatat                                      >  1:630503/1‑68 (MQ=255)
               ggcggcAACGCAACGTCGGCGAATCTGATGGGGATTTCCACTCGCAGCACCACTATTCGCATTTatat                                      >  1:1901157/1‑68 (MQ=255)
               ggcggcAACGCAACGTCGGCGAATCTGATGGGGATTTCCACTCGCAGCACCACTATTCGCATTTATATg                                     >  1:819728/1‑69 (MQ=255)
                    caacgcaacgTCGGCGAATCTGATGGGGATTTCCACTCGCAGCACCACTATTCGCATTTATATGCtctc                                <  1:1833623/69‑1 (MQ=255)
                    caacgcaacgTCGGCGAATCTGATGGGGATTTCCACTCGCAGCACCACTATTCGCATTTATATGCtctc                                <  1:348295/69‑1 (MQ=255)
                    caacgcaacgTCGGCAACCCTGATGGGGATTTCCACTTGCAGCACCACTATTCGCATTTATATGc                                    >  1:2966348/1‑65 (MQ=255)
                    caacgcaacgTCGGCAAACCTGATGGGGATTTCCACTTGCAGCACCACTATTCGCATTTatat                                      >  1:1127501/1‑63 (MQ=255)
                    caacgcaacgTCGGCAAACCTGATGGGGATTTCCACTTGCAGCACCACTATTCGCATTTATATg                                     >  1:1320934/1‑64 (MQ=255)
                    caacgcaacgTCGGCAAACCTGATGGGGATTTCCACTTGCAGCACCACTATTCGCATTTATATGc                                    >  1:489141/1‑65 (MQ=255)
                    caacgcaacgTCGGCAAACCTGATGGGGATTTCCACTTGCAGCACCACTATTCGCATTTATATGc                                    >  1:2582180/1‑65 (MQ=255)
                    caacgcaacgTCGGCAAACCTGATGGGGATTTCCACTTGCAGCACCACTATTCGCATTTATATGc                                    >  1:2447364/1‑65 (MQ=255)
                     aacgcaacgTCGGCGAATCTGATGGGGATTTCCACTCGCAGCACCACTATTCGCATTTATATGCTCTcc                               >  1:136321/1‑69 (MQ=255)
                     aacgcaacgTCGGCGAATCTGATGGGGATTTCCACTCGCAGCACCACTATTCGCATTTATATGCTCTcc                               >  1:863444/1‑69 (MQ=255)
                     aacgcaacgTCGGCGAATCTGATGGGGATTTCCACTCGCAGCACCACTATTCGCATTTATATGCTCTcc                               >  1:2297135/1‑69 (MQ=255)
                        gcaacgTCGGCGAATCTGATGGGGATTTCCACTCGCAGCACCACTATTCGCATTTATATGCTCTCCAc                             >  1:2082115/1‑68 (MQ=255)
                        gcaacgTCGGCGAATCTGATGGGGATTTCCACTCGCAGCACCACTATTCGCATTTATATGCTCTCCAc                             >  1:344619/1‑68 (MQ=255)
                        gcaacgTCGGCGAATCTGATGGGGATTTCCACTCGCAGCACCACTATTCGCATTTATATGCTCTCCAc                             >  1:609906/1‑68 (MQ=255)
                        gcaacgTCGGCGAATCTGATGGGGATTTCCACTCGCAGCACCACTATTCGCATTTATATGCTCTCCAc                             >  1:503696/1‑68 (MQ=255)
                         caacgTCGGCCAATCTGATGGCGATTTCCACTCGCAGCACCACAATTCGCATTTATATGCTCTCCACCg                           >  1:2284135/1‑69 (MQ=255)
                                ggCAAACCTGATGGGGATTTCCACTTGCAGCACCACTATTCGCAtt                                           <  1:2984543/46‑1 (MQ=255)
                                                  ttCCACTCGCAGCACCACTATTCGCATTTATATGCTCTCCACCGGACTGGCAACGCTGGCGGGGATTGt  >  1:72572/1‑69 (MQ=255)
                                                  ttCCACTCGCAGCACCACTATTCGCATTTATATGCTCTCCACCGGACTGGCAACGCTGGCGGGGATTGt  >  1:924264/1‑69 (MQ=255)
                                                  ttCCACTCGCAGCACCACTATTCGCATTTATATGCTCTCCACCGGACTGGCAACGCTGGCGGGGATTGt  >  1:1117290/1‑69 (MQ=255)
                                                  ttCCACTCGCAGCACCACTATTCGCATTTATATGCTCTCCACCGGACTGGCAACGCTGGCGGGGATTGt  >  1:1556380/1‑69 (MQ=255)
                                                  ttCCACTCGCAGCACCACTATTCGCATTTATATGCTCTCCACCGGACTGGCAACGCTGGCGGGGATTGt  >  1:1552348/1‑69 (MQ=255)
                                                   tCCACTCGCAGCACCACTATTCGCATTTATATGCTCTCCACCgg                          >  1:495048/1‑44 (MQ=255)
                                                   tCCACTCGCAGCACCACTATTCGCATTTATATGCTCTCCACCgg                          >  1:492055/1‑44 (MQ=255)
                                                   tCCACTCGCAGCACCACTATTCGCATTTATATGCTCTCCACCgg                          >  1:3378267/1‑44 (MQ=255)
                                                   tCCACTCGCAGCACCACTATTCGCATTTATATGCTCTCCACCgg                          >  1:2932799/1‑44 (MQ=255)
                                                   tCCACTCGCAGCACCACTATTCGCATTTATATGCTCTCCACCgg                          >  1:289199/1‑44 (MQ=255)
                                                   tCCACTCGCAGCACCACTATTCGCATTTATATGCTCTCCACCgg                          >  1:796575/1‑44 (MQ=255)
                                                   tCCACTCGCAGCACCACTATTCGCATTTATATGCTCTCCACCgg                          >  1:2726591/1‑44 (MQ=255)
                                                   tCCACTCGCAGCACCACTATTCGCATTTATATGCTCTCCACCgg                          >  1:2645832/1‑44 (MQ=255)
                                                   tCCACTCGCAGCACCACTATTCGCATTTATATGCTCTCCACCgg                          >  1:218585/1‑44 (MQ=255)
                                                   tCCACTCGCAGCACCACTATTCGCATTTATATGCTCTCCACCgg                          >  1:2182145/1‑44 (MQ=255)
                                                   tCCACTCGCAGCACCACTATTCGCATTTATATGCTCTCCACCgg                          >  1:1337636/1‑44 (MQ=255)
                                                         |                                                             
CAGGTATACGCCATTGGCGGCAACGCAACGTCGGCGAATCTGATGGGGATTTCCACTCGCAGCACCACTATTCGCATTTATATGCTCTCCACCGGACTGGCAACGCTGGCGGGGATTGT  >  minE/2895528‑2895646

Alignment Legend
Aligned base mismatch/match (shaded by quality score): ATCG/ATCG < 3 ≤ ATCG/ATCG < 27 ≤ ATCG/ATCG < 32 ≤ ATCG/ATCG < 36 ≤ ATCG/ATCG
Unaligned base: atcg    Masked matching base: atcg    Alignment gap:     Deleted base: