| Predicted mutation | |||||||
|---|---|---|---|---|---|---|---|
| evidence | seq id | position | mutation | freq | annotation | gene | description |
| RA | minE | 2,928,253 | T→C | 58.7% | L218L (TTG→CTG) | yjgP → | conserved inner membrane protein |
| Read alignment evidence... | |||||||||||
|---|---|---|---|---|---|---|---|---|---|---|---|
| seq id | position | ref | new | freq | score (cons/poly) | reads | annotation | genes | product | ||
| * | minE | 2,928,253 | 0 | T | C | 58.7% | 65.3 / 108.9 | 150 | L218L (TTG→CTG) | yjgP | conserved inner membrane protein |
| Reads supporting (aligned to +/- strand): ref base T (34/28); new base C (51/37); total (85/65) | |||||||||||
| Fisher's exact test for biased strand distribution p-value = 7.40e-01 | |||||||||||
| Kolmogorov-Smirnov test that lower quality scores support variant p-value = 1.00e+00 | |||||||||||
Only 100 of 158 total aligned reads displayed.
TAACCCAGCTGCGCGACGGCTCCCAGGTCGTCACTCTCAACCAGGGAACGCGCTTCGAAGGCACTGCATTGTTACGTGATTTCCGCATTACGGACTTCCAGGATTATCAGGCGATCATTGGTCACCAGGCGGTG > minE/2928185‑2928318 | tAACCCAGCTGCGCGACGGCTCCCAGGTCGTCACTCTCAACCAGGGAACGCGCTTCGAAGGCACTGCAt > 1:1377827/1‑69 (MQ=255)tAACCCAGCTGCGCGACGGCTCCCAGGTCGTCACTCTCAACCAGGGAACGCGCTTCGAAGGCACTGCAt > 1:755155/1‑69 (MQ=255)tAACCCAGCTGCGCGACGGCTCCCAGGTCGTCACTCTCAACCAGGGAACGCGCTTCGAAGGCACTGCAt > 1:3256550/1‑69 (MQ=255)tAACCCAGCTGCGCGACGGCTCCCAGGTCGTCACTCTCAACCAGGGAACGCGCTTCGAAGACACTGCAt > 1:2987965/1‑69 (MQ=255) tGCGCGACGCCTCCCAGGTCGTCACTCTCAACCAGGGAACGCGCTTCGAAGGCACTGCATTGTTACGTg < 1:84361/69‑1 (MQ=255) cccAGGTCGTCACTCTCAACCAGGGAACGCGCTTCGAAGGCACTGCACTGTTACGTTATTTCCGCATTa < 1:1547517/69‑1 (MQ=255) cccAGGTCGTCACTCTCAACCAGGGAACGCGCTTCGAAGGCACTGCACTGTTACGTGATTTCCGCATTa < 1:2689905/69‑1 (MQ=255) cccAGGTCGTCACTCTCAACCAGGGAACGCGCTTCGAAGGCACTGCACTGTTACGTGATTTCCGCATTa < 1:3004132/69‑1 (MQ=255) cccAGGTCGTCACTCTCAACCAGGGAACGCGCTTCGAAGGCACTGCACTGTTACGTGATTTCCGCATTa < 1:2881693/69‑1 (MQ=255) cccAGGTCGTCACTCTCAACCAGGGAACGCGCTTCGAAGGCACTGCACTGTTACGTGATTTCCGCATTa < 1:1841453/69‑1 (MQ=255) cccAGGTCGTCACTCTCAACCAGGGAACGCGCTTCGAAGGCACTGCACTGTTACGTGATTTCCGCATTa < 1:2726935/69‑1 (MQ=255) cccAGGTCGTCACTCTCAACCAGGGAACGCGCTTCGAAGGCACTGCACTGTTACGTGATTTCCGCATTa < 1:2367436/69‑1 (MQ=255) cccAGGTCGTCACTCTCAACCAGGGAACGCGCTTCGAAGGCACTGCACTGTTACGTGATTTCCGCATTa < 1:1901888/69‑1 (MQ=255) cccAGGTCGTCACTCTCAACCAGGGAACGCGCTTCGAAGGCACTGCACTGTTACGTGATTTCCGCATTa < 1:2048689/69‑1 (MQ=255) cccAGGTCGTCACTCTCAACCAGGGAACGCGCTTCGAAGGCACTGCACTGTTACGTGATTTCCGCATTa < 1:2631191/69‑1 (MQ=255) cccAGGTCGTCACTCTCAACCAGGGAACGCGCTTCGAAGGCACTGCACTGTTACGTGATTTCCGCATTa < 1:240470/69‑1 (MQ=255) cccAGGTCGTCACTCTCAACCAGGGAACGCGCTTCGAAGGCACTGCACTGTTACGTGATTTCCGCATTa < 1:2401269/69‑1 (MQ=255) cccAGGTCGTCACTCTCAACCAGGGAACGCGCTTCGAAGGCACTGCACTGTTACGTGATTTCCGCATTa < 1:855017/69‑1 (MQ=255) cccAGGTCGTCACTCTCAACCAGGGAACGCGCTTCGAAGGCACTGCACTGTTACGTGATTTCCGCATTa < 1:3252804/69‑1 (MQ=255) cccAGGTCGTCACTCTCAACCAGGGAACGCGCTTCGAAGGCACTGCACTGTTACGTGATTTCCGCATTa < 1:3108836/69‑1 (MQ=255) aGGTCGTCACTCTCAACCAGGGAACGCGCTTCGAAGGCACTGCATTGTTACGTGATTTGCGCATTACg < 1:3153668/68‑1 (MQ=255) aGGTCGTCACTCTCAACCAGGGAACGCGCTTCGAAGGCACTGCATTGTTACGTGATTTCCGCATTACgg < 1:175616/69‑1 (MQ=255) aGGTCGTCACTCTCAACCAGGGAACGCGCTTCGAAGGCACTGCATTGTTACGTGATTTCCGCATTACgg < 1:3251941/69‑1 (MQ=255) aGGTCGTCACTCTCAACCAGGGAACGCGCTTCGAAGGCACTGCATTGTTACGTGATTTCCGCATTACgg < 1:3411935/69‑1 (MQ=255) aGGTCGTCACTCTCAACCAGGGAACGCGCTTCGAAGGCACTGCATTGTTACGTGATTTCCGCATTACgg < 1:2586601/69‑1 (MQ=255) aGGTCGTCACTCTCAACCAGGGAACGCGCTTCGAAGGCACTGCATTGTTACGTGATTTCCGCATTACgg < 1:767524/69‑1 (MQ=255) aGGTCGTCACTCTCAACCAGGGAACGCGCTTCGAAGGCACTGCATTGTTACGTGATTTCCGCATTACgg < 1:1104137/69‑1 (MQ=255) aGGTCGTCACTCTCAACCAGGGAACGCGCTTCGAAGGCACTGCATTGTTACGTGATTTCCGCATTACg < 1:2667228/68‑1 (MQ=255) cgtcACTCTCAACCAGGGAACGCGCTTCGAAGGCACTGCATTGTTACGTTATTTCCGCATTACGGACt > 1:1063106/1‑68 (MQ=255) cgtcACTCTCAACCAGGGAACGCGCTTCGAAGGCACTGCATTGTTACGTGATTTCCGCATTACGGACt > 1:1282367/1‑68 (MQ=255) aCTCTCAACCAGGGAACGCGCTTCGAAGGCACTGCATTGTTACGTGATTTCCGCATTACGGACTTCCAg < 1:1211664/69‑1 (MQ=255) aCTCTCAACCAGGGAACGCGCTTCGAAGGCACTGCATTGTTACGTGATTTCCGCATTACGGACTTCCAg < 1:2030566/69‑1 (MQ=255) aCTCTCAACCAGGGAACGCGCTTCGAAGGCACTGCATTGTTACGTGATTTCCGCATTACGGACTTCCAg < 1:1747245/69‑1 (MQ=255) ctcAACCAGGGAACGCGCTTCGAAGGCACTGCATTGTTACGTGATTTCCGCATTACGGACTTCCAGGAt < 1:2844681/69‑1 (MQ=255) ccAGGGAACGCGCTTCGAAGGCACTGCACTGTTACGTGATTTCCGCATTACGGATTTCCa > 1:2376978/1‑60 (MQ=255) ccAGGGAACGCGCTTCGAAGGCACTGCACTGTTACGTGATTTCCGCATTACGGATTTCCAGGATTAt > 1:1020749/1‑67 (MQ=255) ccAGGGAACGCGCTTCGAAGGCACTGCACTGTTACGTGATTTCCGCATTACGGATTTCCAGGATTATCa > 1:296372/1‑69 (MQ=255) ccAGGGAACGCGCTTCGAAGGCACTGCACTGTTACGTGATTTCCGCATTACGGATTTCCAGGATTATCa > 1:1817771/1‑69 (MQ=255) ccAGGGAACGCGCTTCGAAGGCACTGCACTGTTACGTGATTTCCGCATTACGGATTTCCAGGATTATCa > 1:2158023/1‑69 (MQ=255) ccAGGGAACGCGCTTCGAAGGCACTGCACTGTTACGTGATTTCCGCATTACGGATTTCCAGGATTATCa > 1:2782598/1‑69 (MQ=255) ccAGGGAACGCGCTTCGAAGGCACTGCACTGTTACGTGATTTCCGCATTACGGATTTCCAGGATTATCa > 1:2761475/1‑69 (MQ=255) ccAGGGAACGCGCTTCGAAGGCACTGCACTGTTACGTGATTTCCGCATTACGGATTTCCAGGATTATCa > 1:687140/1‑69 (MQ=255) ccAGGGAACGCGCTTCGAAGGCACTGCACTGTTACGTGATTTCCGCATTACGGATTTCCAGGATTATCa > 1:1629151/1‑69 (MQ=255) ccAGGGAACGCGCTTCGAAGGCACTGCACTGTTACGTGATTTCCGCATTACGGATTTCCAGGATTATCa > 1:1305856/1‑69 (MQ=255) ccAGGGAACGCGCTTCGAAGGCACTGCACTGTTACGTGATTTCCGCATTACGGATTTAGAGGATTATCa > 1:2811875/1‑69 (MQ=255) aaCGCGCTTCGAAGGCACTGCATTGTTACGTGAtt > 1:2538867/1‑35 (MQ=255) aaCGCGCTTCGAAGGCACTGCATTGTTACGTGATTTCCGCATTACGGACTTCCAGGATTATCa > 1:3387847/1‑63 (MQ=255) aaCGCGCTTCGAAGGCACTGCATTGTTACGTGATTTCCGCATTACGGACTTCCAGGATTATCAGGCGAt > 1:977225/1‑69 (MQ=255) aaCGCGCTTCGAAGGCACTGCATTGTTACGTGATTTCCGCATTACGGACTTCCAGGATTATCAGGCGAt > 1:2943134/1‑69 (MQ=255) aaCGCGCTTCGAAGGCACTGCATTGTTACGTGATTTCCGCATTACGGACTTCCAGGATTATCAGGCGAt > 1:1430282/1‑69 (MQ=255) aaCGCGCTTCGAAGGCACTGCATTGTTACGTGATTTCCGCATTACGGACTTCCAGGATTATCAGGCGAt > 1:2662091/1‑69 (MQ=255) aaCGCGCTTCGAAGGCACTGCATTGTTACGTGATTTCCGCATTACGGACTTCCAGGATTATCAGGCGAt > 1:752144/1‑69 (MQ=255) aaCGCGCTTCGAAGGCACTGCATTGTTACGTGATTTCCGCATTACGGACTTCCAGGATTATCAGGCGAt > 1:1072498/1‑69 (MQ=255) aaCGCGCTTCGAAGGCACTGCACTGTTACGTGATTTCCGCATTACGGATTTCCAGGATTATCAGGCGa > 1:2433104/1‑68 (MQ=255) aaCGCGCTTCGAAGGCACTGCACTGTTACGTGATTTCCGCATTACGGATTTCCAGGATTATCAGGCGAt > 1:3294262/1‑69 (MQ=255) aaCGCGCTTCGAAGGCACTGCACTGTTACGTGATTTCCGCATTACGGATTTCCAGGATTATCAGGCGAt > 1:3344131/1‑69 (MQ=255) aaCGCGCTTCGAAGGCACTGCACTGTTACGTGATTTCCGCATTACGGATTTCCAGGATTATCAGGCGAt > 1:523670/1‑69 (MQ=255) aaCGCGCTTCGAAGGCACTGCACTGTTACGTGATTTCCGCATTACGGATTTCCAGGATTATCAGGCGAt > 1:1388902/1‑69 (MQ=255) aaCGCGCTTCGAAGGCACTGCACTGTTACGTGATTTCCGCATTACGGATTTCCAGGATTATCAGGCGAt > 1:594761/1‑69 (MQ=255) aaCGCGCTTCGAAGGCACTGCACTGTTACGTGATTTCCGCATTACGGATTTCCAGGATTATCAGGCGAt > 1:2237554/1‑69 (MQ=255) aaCGCGCTTCGAAGGCACTGCACTGTTACGTGATTTCCGCATTACGGATTTCCAGGATTATCAGGCGAt > 1:630493/1‑69 (MQ=255) aaCGCGCTTCGAAGGCACTGCACTGTTACGTGATTTCCGCATTACGGATTTCCAGGATTATCAGGCGAt > 1:173895/1‑69 (MQ=255) aaCGCGCTTCGAAGGCACTGCACTGTTACGTGATTTCCGCATTACGGATTTCCAGGATTATCAGGCGAt > 1:710866/1‑69 (MQ=255) aaCGCGCTTCGAAGGCACTGCACTGTTACGTGATTTCCGCATTACGGATTTCCAGGATTATCAGGCGAt > 1:1162131/1‑69 (MQ=255) aaCGCGCTTCGAAGGCACTGCACTGTTACGTGATTTCCGCATTACGGATTTCCAGGATTATCAGGCGAt > 1:3051428/1‑69 (MQ=255) aaCGCGCTTCGAAGGCACTGCACTGTTACGTGATTTCCGCATTACGGATTTCCAGGATTATCAGGCGAt > 1:2750275/1‑69 (MQ=255) aaCGCGCTTCGAAGGCACTGCACTGTTACGTGATTTCCGCATTACGGATTTCCAGGATTATCAGGCGAt > 1:2737430/1‑69 (MQ=255) aaCGCGCTTCGAAGGCACTGCACTGTTACGTGATTTCCGCATTACGGATTTCCAGGATTATCAGGCGAt > 1:1841482/1‑69 (MQ=255) aaCGCGCTTCGAAGGCACTGCACTGTTACGTGATTTCCGCATTACGGATTTCCAGGATTATCAGGCGAt > 1:2411178/1‑69 (MQ=255) aaCGCGCTTCGAAGGCACTGCACTGTTACGTGATTTCCGCATTACGGATTTCCAGGATTATCAGGCGAt > 1:1783229/1‑69 (MQ=255) aaCGCGCTTCGAAGGCACTGCACTGTTACGTGATTTCCGCATTACGGATTTCCAGGATTATCAGGCGAt > 1:2061272/1‑69 (MQ=255) aaCGCGCTTCGAAGGCACTGCACTGTTACGTGATTTCCGCATTACGGATTTCCAGGATTATCAGGCGAt > 1:2457912/1‑69 (MQ=255) aaCGCGCTTCGAAGGCACTGCACTGTTACGTGATTTCCGCATTACGGATTTCCAGGATTATCAGGCGAt > 1:2199766/1‑69 (MQ=255) aaCGCGCTTCGAAGGCACTGCACTGTTACGTGATTTCCGCATTACGGATTTCCAGGATTATCAGGCGAt > 1:2648081/1‑69 (MQ=255) aCGCGCTTCGAAGGCACTGCATTGTTACGTGATTTCCGCATTACGGACTTCCAGGATTATCAGGCGATc < 1:1234938/69‑1 (MQ=255) gcTTCGAAGGCACTGCATTGTTACGTGATTTCCGCATTACGGACTTCCAGGATTATCAGGCGATCATTg < 1:752172/69‑1 (MQ=255) gcTTCGAAGGCACTGCATTGTTACGTGATTTCCGCATTACGGACTTCCAGGATTATCAGGCGATCATTg < 1:839/69‑1 (MQ=255) ttCGAAGGCACTGCATTGTTACGTGATTTCCGCATTACGGACTTCCAGGATTATCAGGCGATCATTGGt < 1:627744/69‑1 (MQ=255) tCGAAGGCACTGCATTGTTACGTGATTTCCGCATTACGGACTTCCAGGATTATCAGGCGATGATTGGt < 1:1202348/68‑1 (MQ=255) cTGCACTGTTACGTGATTTCCGCATTACGGATTTCCAGGATTATCAGGCGATCATTGGTCACCAGGCgg < 1:3313261/69‑1 (MQ=255) cTGCACTGTTACGTGATTTCCGCATTACGGATTTCCAGGATTATCAGGCGATCATTGGTCACCAGGCgg < 1:2204523/69‑1 (MQ=255) cTGCACTGTTACGTGATTTCCGCATTACGGATTTCCAGGATTATCAGGCGATCATTGGTCACCAGGCgg < 1:2637877/69‑1 (MQ=255) cTGCACTGTTACGTGATTTCCGCATTACGGATTTCCAGGATTATCAGGCGATCATTGGTCACCAGGCgg < 1:869248/69‑1 (MQ=255) cTGCACTGTTACGTGATTTCCGCATTACGGATTTCCAGGATTATCAGGCGATCATTGGTCACCAGGCgg < 1:2100801/69‑1 (MQ=255) cTGCACTGTTACGTGATTTCCGCATTACGGATTTCCAGGATTATCAGGCGATCATTGGTCACCAGGCgg < 1:1345777/69‑1 (MQ=255) cTGCACTGTTACGTGATTTCCGCATTACGGATTTCCAGGATTATCAGGCGATCATTGGTCACCAGGCgg < 1:3229095/69‑1 (MQ=255) cTGCACTGTTACGTGATTTCCGCATTACGGATTTCCAGGATTATCAGGCGATCATTGGTCACCAGGCgg < 1:1871463/69‑1 (MQ=255) cTGCACTGTTACGTGATTTCCGCATTACGGATTTCCAGGAATATCAGGCGATCATTGGTCACCAGGCgg < 1:3330668/69‑1 (MQ=255) gCATTGTTACGTGATTTCCGCATTACGGACTTCCAGGATTATCAGGCGATCATTGGTCACCAGGCGGt > 1:703303/1‑68 (MQ=255) gCATTGTTACGTGATTTCCGCATTACGGACTTCCAGGATTATCAGGCGATCATTGGTCACCAGGCGGTg > 1:1016396/1‑69 (MQ=255) gCATTGTTACGTGATTTCCGCATTACGGACTTCCAGGATTATCAGGCGATCATTGGTCACCAGGCGGTg > 1:774518/1‑69 (MQ=255) gCATTGTTACGTGATTTCCGCATTACGGACTTCCAGGATTATCAGGCGATCATTGGTCACCAGGCGGTg > 1:2295181/1‑69 (MQ=255) gCATTGTTACGTGATTTCCGCATTACGGACTTCCAGGATTATCAGGCGATCATTGGTCACCAGGCGGTg > 1:2165957/1‑69 (MQ=255) gCATTGTTACGTGATTTCCGCATTACGGACTTCCAGGATTATCAGGCGATCATTGGTCACCAGGCGGTg > 1:2487879/1‑69 (MQ=255) gCATTGTTACGTGATTTCCGCATTACGGACTTCCAGGATTATCAGGCGATCATTGGTCACCAGGCGGTg > 1:2599046/1‑69 (MQ=255) gCATTGTTACGTGATTTCCGCATTACGGACTTCCAGGATTATCAGGCGATCATTGGTCACCAGGCGGTg > 1:371101/1‑69 (MQ=255) gCATTGTTACGTGATTTCCGCATTACGGACTTCCAGGATTATCAGGCGATCATTGGTCACCAGGCGGTg > 1:2608995/1‑69 (MQ=255) gCATTGTTACGTGATTTCCGCATTACGGACTTCCAGGATTATCAGGCGATCATTGGTCACCAGGCGGTg > 1:1341350/1‑69 (MQ=255) gCATTGTTACGTGATTTCCGCATTACGGACTTCCAGGATTATCAGGCGATCATTGGTCACCAGGCGGTg > 1:3119339/1‑69 (MQ=255) gCATTGTTACGTGATTTCCGCATTACGGACTTCCAGGATTATCAGGCGATAATTGGTCACCAGGCGGTg > 1:2091443/1‑69 (MQ=255) | TAACCCAGCTGCGCGACGGCTCCCAGGTCGTCACTCTCAACCAGGGAACGCGCTTCGAAGGCACTGCATTGTTACGTGATTTCCGCATTACGGACTTCCAGGATTATCAGGCGATCATTGGTCACCAGGCGGTG > minE/2928185‑2928318 |
| Alignment Legend |
|---|
Aligned base mismatch/match (shaded by quality score): ATCG/ATCG < 3 ≤ ATCG/ATCG < 27 ≤ ATCG/ATCG < 32 ≤ ATCG/ATCG < 36 ≤ ATCG/ATCG |
Unaligned base: atcg Masked matching base: atcg Alignment gap: ‑ Deleted base: ‑ |