| Predicted mutation | |||||||
|---|---|---|---|---|---|---|---|
| evidence | seq id | position | mutation | freq | annotation | gene | description |
| RA | minE | 2,949,119 | T→C | 41.5% | T10T (ACA→ACG) | yjjP ← | predicted inner membrane protein |
| Read alignment evidence... | |||||||||||
|---|---|---|---|---|---|---|---|---|---|---|---|
| seq id | position | ref | new | freq | score (cons/poly) | reads | annotation | genes | product | ||
| * | minE | 2,949,119 | 0 | T | C | 41.5% | 29.4 / 64.7 | 89 | T10T (ACA→ACG) | yjjP | predicted inner membrane protein |
| Reads supporting (aligned to +/- strand): ref base T (28/24); new base C (16/21); total (44/45) | |||||||||||
| Fisher's exact test for biased strand distribution p-value = 3.92e-01 | |||||||||||
| Kolmogorov-Smirnov test that lower quality scores support variant p-value = 7.95e-01 | |||||||||||
CAACCAACGCGCTTTCCGCACCATGTTGCAAAAGAAATAATCCACACTGGATACAAAGCCGTGTTACGGCTCGCTGTTGCTCAGTTTGCATAACTCGCCCTTTGTCATAGACGTGCTGCGTATTG > minE/2949058‑2949182 | caaccaacGCGCTTTCCGCACCATGTTGCAAAAGAAATAATCCACACTGGATACAAAGCCGTGTTACgg > 1:2861932/1‑69 (MQ=255)caaccaacGCGCTTTCCGCACCATGTTGCAAAAGAAATAATCCACACTGGATACAAAGCCGTGTTACgg > 1:288381/1‑69 (MQ=255)caaccaacGCGCTTTCCGCACCATGTTGCAAAAGAAATAATCCACACTGGATACAAAGCCGTGTTACgg > 1:1470506/1‑69 (MQ=255)caaccaacGCGCTTTCCGCACCATGTTGCAAAAGAAATAATCCACACTGGATACAAAGCCGTGTTACgg > 1:1149332/1‑69 (MQ=255)caaccaacGCGCTTTCCGCACCATGTTGCAAAAGAAATAATCCACACTGGATACAAAGCCGTGTTACgg > 1:1164545/1‑69 (MQ=255)caaccaacGCGCTTTCCGCACCATGTTGCAAAAGAAATAATCCACACTGGATACAAAGCCGTGTTACgg > 1:571538/1‑69 (MQ=255)caaccaacGCGCTTTCCGCACCATGTTGCAAAAGAAATAATCCACACTGGATACAAAGCCGTGTTACgg > 1:1260973/1‑69 (MQ=255)caaccaacGCGCTTTCCGCACCATGTTGCAAAAGAAATAATCCACACTGGATACAAAGCCGTGTTACg > 1:1271185/1‑68 (MQ=255) aaccaacGCGCTTTCCGCACCATGTTGCAAAAGAAATAATCCACACTGGATACAAAGCCGTGTTACGGc > 1:2327095/1‑69 (MQ=255) aaccaacGCGCTTTCCGCACCATGTTGCAAAAGAAATAATCCACACTGGATACAAAGCCGTGTTACGGc > 1:2472352/1‑69 (MQ=255) aaccaacGCGCTTTCCGCACCATGTTGCAAAAGAAATAATCCACACTGGATACAAAGCCGTGTTACGGc > 1:1688820/1‑69 (MQ=255) aaccaacGCGCTTTCCGCACCATGTTGCAAAAGAAATAATCCACACTGGATACAAAGCCGTGTTACGGc > 1:1167741/1‑69 (MQ=255) aaccaacGCGCTTTCCGCACCATGTTGCAAAAGAAATAATCCACACTGGATACAAAGCCGTGTTACGGc > 1:1216292/1‑69 (MQ=255) aCCATGTTGCAAAAGAAATAATCCACACTGGATACAAAGCCGTGTTACGGCTCGCTGTTGCTCAGTTTg < 1:1092477/69‑1 (MQ=255) aCCATGTTGCAAAAGAAATAATCCACACTGGATACAAAGCCGTGTTACGGCTCGCTGTTGCTCAGTTTg < 1:1893243/69‑1 (MQ=255) aCCATGTTGCAAAAGAAATAATCCACACTGGATACAAAGCCGTGTTACGGCTCGCTGTTGCTCAGTTTg < 1:1019298/69‑1 (MQ=255) aCCATGTTGCAAAAGAAATAATCCACACTGGATACAAAGCCGTGTTACGGCTCGCTGTTGCTCAGTTTg < 1:2659048/69‑1 (MQ=255) aCCATGTTGCAAAAGAAATAATCCACACTGGATACAAAGCCGTGTTACGGCTCGCTGTTGCTCAGTTTg < 1:951176/69‑1 (MQ=255) aCCATGTTGCAAAAGAAATAATCCACACTGGATACAAAGCCGTGTTACGGCTCGCTGTTGCTCAGTTTg < 1:1042135/69‑1 (MQ=255) aCCATGTTGCAAAAGAAATAATCCACACTGGATACAAAGCCGTGTTACGGCTCGCTGTTGCTCAGTTTg < 1:159725/69‑1 (MQ=255) aCCATGTTGCAAAAGAAATAATCCACACTGGATACAAAGCCGTGTTACGGCTCGCTGTTGCTCAGTTTg < 1:1555390/69‑1 (MQ=255) aCCATGTTGCAAAAGAAATAATCCACACTGGATACAAAGCCGTGTTACGGCTCGCTGTTGCTCAGTTTg < 1:1487994/69‑1 (MQ=255) aCCATGTTGCAAAAGAAATAATCCACACTGGATACAAAGCCGTGTTACGGCTCGCTGTTGCTCAGTTTg < 1:425564/69‑1 (MQ=255) aCCATGTTGCAAAAGAAATAATCCACACTGGATACAAAGCCGTGTTACGGCTCGCTGTTGCTCAGTTTg < 1:824271/69‑1 (MQ=255) aCCATGTTGCAAAAGAAATAATCCACACTGGATACAAAGCCGTGTTACGGCTCGCTGTTGCCCAGTTTg < 1:933712/69‑1 (MQ=255) gTTGCAAAAGAAATAATCCACACTGGATACAAAGCCGTGTTACGGCTCGCTGTTGCTCAGTTTGCATaa < 1:1424899/69‑1 (MQ=255) gTTGCAAAAGAAATAATCCACACTGGATACAAAGCCGTGTTACGGCTCGCTGTTGCTCAGTTTGCATaa < 1:1883652/69‑1 (MQ=255) gTTGCAAAAGAAATAATCCACACTGGATACAAAGCCGTGTTACGGCTCGCTGTTGCTCAGTTTGCATaa < 1:239417/69‑1 (MQ=255) tGCAAAAGAAATAATCCACACTGGATACAAAGCCGTGTTACGGCTCGCTGTTGCTCAGTTTGCATAAc > 1:2488465/1‑68 (MQ=255) tGCAAAAGAAATAATCCACACTGGATACAAAGCCGTGTTACGGCTCGCTGTTGCTCAGTTTGCATAACt > 1:342779/1‑69 (MQ=255) tGCAAAAGAAATAATCCACACTGGATACAAAGCCGTGTTACGGCTCGCTGTTGCTCAGTTTGCATAACt > 1:3136799/1‑69 (MQ=255) tGCAAAAGAAATAATCCACACTGGATACAAAGCCGTGTTACGGCTCGCTGTTGCTCAGTTTGCATAACt > 1:44300/1‑69 (MQ=255) tGCAAAAGAAATAATCCACACTGGATACAAAGCCGTGTTACGGCTCGCTGTTGCTCAGTTTGCATAACt > 1:997825/1‑69 (MQ=255) tGCAAAAGAAATAATCCACACTGGATACAAAGCCGTGTTACGGCTCGCTGTTGCTCAGTTTGCATAACt > 1:1269031/1‑69 (MQ=255) tGCAAAAGAAATAATCCACACTGGATACAAAGCCGTGTTACGGCTCGCTGTTGCTCAGTTTGCATAACt > 1:1799653/1‑69 (MQ=255) aGAAATAATCCACACTGGATACAAAGCCGTGTTACGGCTCGCTGTTGCTCAGTTTGCATAACTCGCCCt > 1:2101133/1‑69 (MQ=255) aGAAATAATCCACACTGGATACAAAGCCGTGTTACGGCTCGCTGTTGCTCAGTTTGCATAACTCGCCCt > 1:383361/1‑69 (MQ=255) aGAAATAATCCACACTGGATACAAAGCCGTGTTACGGCTCGCTGTTGCTCAGTTTGCATAACTCGCCCt > 1:155775/1‑69 (MQ=255) aGAAATAATCCACACTGGATACAAAGCCGTGTTACGGCTCGCTGTTGCTCAGTTTGCATAACTCGCCCt > 1:1607354/1‑69 (MQ=255) aGAAATAATCCACACTGGATACAAAGCCGTGTTACGGCTCGCTGTTGCTCAGTTTGCATAACTCGCCCt > 1:2777184/1‑69 (MQ=255) aaaTAATCCACACTGGATACAAAGCCGCGTTACGGCTCGCTGTTGCTCAGTTTGCATAACTCGCCCttt < 1:546514/69‑1 (MQ=255) aaaTAATCCACACTGGATACAAAGCCGCGTTACGGCTCGCTGTTGCTCAGTTTGCATAACTCGCCCttt < 1:1482264/69‑1 (MQ=255) aaaTAATCCACACTGGATACAAAGCCGCGTTACGGCTCGCTGTTGCTCAGTTTGCATAACTCGCCCttt < 1:754757/69‑1 (MQ=255) aaaTAATCCACACTGGATACAAAGCCGCGTTACGGCTCGCTGTTGCTCAGTTTGCATAACTCGCCCttt < 1:3426114/69‑1 (MQ=255) aaaTAATCCACACTGGATACAAAGCCGCGTTACGGCTCGCTGTTGCTCAGTTTGCATAACTCGCCCttt < 1:3369056/69‑1 (MQ=255) aaaTAATCCACACTGGATACAAAGCCGCGTTACGGCTCGCTGTTGCTCAGTTTGCATAACTCGCCCttt < 1:1568893/69‑1 (MQ=255) aaaTAATCCACACTGGATACAAAGCCGCGTTACGGCTCGCTGTTGCTCAGTTTGCATAACTCGCCCttt < 1:846161/69‑1 (MQ=255) aaaTAATCCACACTGGATACAAAGCCGCGTTACGGCTCGCTGTTGCTCAGTTTGCATAACTCGCCCttt < 1:2959611/69‑1 (MQ=255) aaaTAATCCACACTGGATACAAAGCCGCGTTACGGCTCGCTGTTGCTCAGTTTGCATAACTCGCCCttt < 1:873952/69‑1 (MQ=255) aaaTAATCCACACTGGATACAAAGCCGCGTTACGGCTCGCTGTTGCTCAGTTTGCATAACTCGCCCttt < 1:266014/69‑1 (MQ=255) aaaTAATCCACACTGGATACAAAGCCGCGTTACGGCTCGCTGTTGCTCAGTTTGCATAACTCGCCCttt < 1:1736909/69‑1 (MQ=255) aaaTAATCCACACTGGATACAAAGCCGCGTTACGGCTCGCTGTTGCTCAGTTTGCATAACTCGCCCttt < 1:2556372/69‑1 (MQ=255) aaaTAATCCACACTGGATACAAAGCCGCGTTACGGCTCGCTGTTGCTCAGTTTGCATAACTCGCCCttt < 1:899274/69‑1 (MQ=255) aaaTAATCCACACTGGATACAAAGCCGCGTTACGGCTCGCTGTTGCTCAGTTTGCATAACTCGCCCttt < 1:2451962/69‑1 (MQ=255) aaaTAATCCACACTGGATACAAAGCCGCGTTACGGCTCGCTGTTGCTCAGTTTGCATAACTCGCCCttt < 1:942791/69‑1 (MQ=255) aaaTAATCCACACTGGATACAAAGCCGCGTTACGGCTCGCTGTTGCTCAGTTTGCATAACTCGCCCttt < 1:239891/69‑1 (MQ=255) aaaTAATCCACACTGGATACAAAGCCGCGTTACGGCTCGCTGTTGCTCAGTTTGCATAACTCGCCCttt < 1:1896523/69‑1 (MQ=255) aaaTAATCCACACTGGATACAAAGCCGCGTTACGGCTCGCTGTTGCTCAGTTTGCATAACTCGCCCttt < 1:2259647/69‑1 (MQ=255) aaaTAATCCACACTGGATACAAAGCCGCGTTACGGCTCGCTGTTGCTCAGTTTGCATAACTCGCCCttt < 1:1093032/69‑1 (MQ=255) taatCCACACTGGATACAAAGCCGCGTTACGGCTCGCTGTTGCTCAGTTTGCATAACTCGGCCttt < 1:803567/66‑1 (MQ=255) ccACACTGGATACAAAGCCGTGTTACGGCTCGCTGTTGCTCAGTTTGCATAACTCGCCCTTTGTCATAg < 1:1960001/69‑1 (MQ=255) ccACACTGGATACAAAGCCGTGTTACGGCTCGCTGTTGCTCAGTTTGCATAACTCGCCCTTTGTCATAg < 1:661993/69‑1 (MQ=255) cacaCTGGATACAAAGCCGTGTTACGGCTCGCTGTTGCTCAGTTTGCATAACTCGCCCTTTGTCATAGa < 1:900817/69‑1 (MQ=255) cAAAGCCGTGTTACGGCTCGCTGTTGCTCAGTTTGCATAACTCGCCCTTTGTCa > 1:1998726/1‑54 (MQ=255) cAAAGCCGTGTTACGGCTCGCTGTTGCTCAGTTTGCATAACTCGCCCTTTGTCa > 1:757281/1‑54 (MQ=255) cAAAGCCGTGTTACGGCTCGCTGTTGCTCAGTTTGCATAACTCGCCCTTTGTCa > 1:915482/1‑54 (MQ=255) cAAAGCCGTGTTACGGCTCGCTGTTGCTCAGTTTGCATAACTCGCCCTTTGTCATAGACGTGCTGCGTa < 1:447318/69‑1 (MQ=255) cAAAGCCGTGTTACGGCTCGCTGTTGCTCAGTTTGCATAACTCGCCCTTTGTCATAGACGTGCTGCGTa < 1:102553/69‑1 (MQ=255) cAAAGCCGTGTTACGGCTCGCTGTTGCTCAGTTTGCATAACTCGCCCTTTGTCATAGACGTGCTGCGTa < 1:1295023/69‑1 (MQ=255) cAAAGCCGTGTTACGGCTCGCTGTTGCTCAGTTTGCATAACTCGCCCTTTGTCATAGACGTGCTGCGTa < 1:717794/69‑1 (MQ=255) cAAAGCCGTGTTACGGCTCGCTGTTGCTCAGTTTGCATAACTCGCCCTTTGTCATAGACGTGCTGCGTa < 1:3419075/69‑1 (MQ=255) aaaGCCGCGTTACGGCTCGCTGTTGCTCAGTTTGCATAACTCGCCCttt < 1:1583771/49‑1 (MQ=255) aGCCGCGTTACGGCTCGCTGTTGCTCAGTTTGCATaa > 1:538276/1‑37 (MQ=255) aGCCGCGTTACGGCTCGCTGTTGCTCAGTTTGCATAACTCGCCCTTTGTCATa > 1:1028422/1‑53 (MQ=255) aGCCGCGTTACGGCTCGCTGTTGCTCAGTTTGCATAACTCGCCCTTTGTCATAGACGTGCTGCGTAtt > 1:480926/1‑68 (MQ=255) aGCCGCGTTACGGCTCGCTGTTGCTCAGTTTGCATAACTCGCCCTTTGTCATAGACGTGCTGCGTAtt > 1:276296/1‑68 (MQ=255) aGCCGCGTTACGGCTCGCTGTTGCTCAGTTTGCATAACTCGCCCTTTGTCATAGACGTGCTGCGTAtt > 1:1147254/1‑68 (MQ=255) aGCCGCGTTACGGCTCGCTGTTGCTCAGTTTGCATAACTCGCCCTTTGTCATAGACGTGCTGCGTAtt > 1:3342034/1‑68 (MQ=255) aGCCGCGTTACGGCTCGCTGTTGCTCAGTTTGCATAACTCGCCCTTTGTCATAGACGTGCTGCGTATTg > 1:3122027/1‑69 (MQ=255) aGCCGCGTTACGGCTCGCTGTTGCTCAGTTTGCATAACTCGCCCTTTGTCATAGACGTGCTGCGTATTg > 1:862261/1‑69 (MQ=255) aGCCGCGTTACGGCTCGCTGTTGCTCAGTTTGCATAACTCGCCCTTTGTCATAGACGTGCTGCGTATTg > 1:789209/1‑69 (MQ=255) aGCCGCGTTACGGCTCGCTGTTGCTCAGTTTGCATAACTCGCCCTTTGTCATAGACGTGCTGCGTATTg > 1:2757494/1‑69 (MQ=255) aGCCGCGTTACGGCTCGCTGTTGCTCAGTTTGCATAACTCGCCCTTTGTCATAGACGTGCTGCGTATTg > 1:1802374/1‑69 (MQ=255) aGCCGCGTTACGGCTCGCTGTTGCTCAGTTTGCATAACTCGCCCTTTGTCATAGACGTGCTGCGTATTg > 1:2063408/1‑69 (MQ=255) aGCCGCGTTACGGCTCGCTGTTGCTCAGTTTGCATAACTCGCCCTTTGTCATAGACGTGCTGCGTATTg > 1:990972/1‑69 (MQ=255) aGCCGCGTTACGGCTCGCTGTTGCTCAGTTTGCATAACTCGCCCTTTGTCATAGACGTGCTGCGTATTg > 1:584304/1‑69 (MQ=255) aGCCGCGTTACGGCTCGCTGTTGCTCAGTTTGCATAACTCG‑CCTTTGTCATAGACGTGCTGCGTATTg > 1:1989428/1‑68 (MQ=255) aGCCGCGTTACCGCTCGCTGTTGCTCAGTTTGCATAACTCGc > 1:381205/1‑42 (MQ=38) gCCGTGTTACGGCTCGCTGTTGCTCAGTTTGCATaa < 1:63173/36‑1 (MQ=255) tgtTACGGCTCGCTGTTGCTCAGTTTGCATAACTCGCCCTTTGTCATAGACGTGCTGCGTa < 1:890885/61‑1 (MQ=255) | CAACCAACGCGCTTTCCGCACCATGTTGCAAAAGAAATAATCCACACTGGATACAAAGCCGTGTTACGGCTCGCTGTTGCTCAGTTTGCATAACTCGCCCTTTGTCATAGACGTGCTGCGTATTG > minE/2949058‑2949182 |
| Alignment Legend |
|---|
Aligned base mismatch/match (shaded by quality score): ATCG/ATCG < 3 ≤ ATCG/ATCG < 14 ≤ ATCG/ATCG < 32 ≤ ATCG/ATCG < 36 ≤ ATCG/ATCG |
Unaligned base: atcg Masked matching base: atcg Alignment gap: ‑ Deleted base: ‑ |