| Predicted mutation | |||||||
|---|---|---|---|---|---|---|---|
| evidence | seq id | position | mutation | freq | annotation | gene | description |
| RA | minE | 260,129 | G→A | 41.9% | F118F (TTC→TTT) | tsx ← | nucleoside channel, receptor of phage T6 and colicin K |
| Read alignment evidence... | |||||||||||
|---|---|---|---|---|---|---|---|---|---|---|---|
| seq id | position | ref | new | freq | score (cons/poly) | reads | annotation | genes | product | ||
| * | minE | 260,129 | 0 | G | A | 41.9% | 35.2 / 67.0 | 93 | F118F (TTC→TTT) | tsx | nucleoside channel, receptor of phage T6 and colicin K |
| Reads supporting (aligned to +/- strand): ref base G (27/27); new base A (11/28); total (38/55) | |||||||||||
| Fisher's exact test for biased strand distribution p-value = 5.38e-02 | |||||||||||
| Kolmogorov-Smirnov test that lower quality scores support variant p-value = 9.40e-01 | |||||||||||
ATCTTTATTACGACCCATGTCGTAAATGTAGTTGTTCGCGAAGTACCACTCTTTGAACGGACCGAAGCTAAGGTCAGTATTGGTCAGCTTGTCGATGGAGAAACGTGGTTCGATTTCC > minE/260066‑260183 | aTCTTTATTACGACCCATGTCGTAAATGTAGTTGTTCGCGAAGTACCACTCTTTGAACGGACCGAAg > 1:858429/1‑67 (MQ=255)aTCTTTATTACGACCCATGTCGTAAATGTAGTTGTTCGCGAAGTACCACTCTTTGAACGGACCGAAg > 1:2550596/1‑67 (MQ=255)aTCTTTATTACGACCCATGTCGTAAATGTAGTTGTTCGCGAAGTACCACTCTTTGAACGGACCGAAg > 1:3405341/1‑67 (MQ=255) tttATTACGACCCATGTCGTAAATGTAGTTGTTCGCGAAGTACCACTCTTTGAACGGACCGAAGCTaa > 1:2619852/1‑68 (MQ=255) aCGACCCATGTCGTAAATGTAGTTGTTCGCGAAGTACCACTCTTTGAACGGACCGAAGCTAAGGTCAg < 1:3321102/68‑1 (MQ=255) aCGACCCATGTCGTAAATGTAGTTGTTCGCGAAGTACCACTCTTTGAACGGACCGAAGCTAAGGTCAg < 1:2126499/68‑1 (MQ=255) aCGACCCATGTCGTAAATGTAGTTGTTCGCGAAGTACCACTCTTTGAACGGACCGAAGCTAAGGTCAg < 1:2367326/68‑1 (MQ=255) aCGACCCATGTCGTAAATGTAGTTGTTCGCGAAGTACCACTCTTTGAACGGACCGAAGCTAAGGTCAg < 1:2398740/68‑1 (MQ=255) aCGACCCATGTCGTAAATGTAGTTGTTCGCGAAGTACCACTCTTTGAACGGACCGAAGCTAAGGTCAg < 1:1974729/68‑1 (MQ=255) aCGACCCATGTCGTAAATGTAGTTGTTCGCGAAGTACCACTCTTTGAACGGACCGAAGCTAAGGTCAg < 1:2460227/68‑1 (MQ=255) aCGACCCATGTCGTAAATGTAGTTGTTCGCGAAGTACCACTCTTTGAACGGACCGAAGCTAAGGTCAg < 1:2741816/68‑1 (MQ=255) aCGACCCATGTCGTAAATGTAGTTGTTCGCGAAGTACCACTCTTTGAACGGACCGAAGCTAAGGTCAg < 1:2890019/68‑1 (MQ=255) aCGACCCATGTCGTAAATGTAGTTGTTCGCGAAGTACCACTCTTTGAACGGACCGAAGCTAAGGTCAg < 1:3283244/68‑1 (MQ=255) aCGACCCATGTCGTAAATGTAGTTGTTCGCGAAGTACCACTCTTTGAACGGACCGAAGCTAAGGTCAg < 1:1591338/68‑1 (MQ=255) aCGACCCATGTCGTAAATGTAGTTGTTCGCGAAGTACCACTCTTTGAACGGACCGAAGCTAAGGTCAg < 1:1422684/68‑1 (MQ=255) aCGACCCATGTCGTAAATGTAGTTGTTCGCGAAGTACCACTCTTTGAACGGACCGAAGCTAAGGTCAg < 1:470741/68‑1 (MQ=255) aCGACCCATGTCGTAAATGTAGTTGTTCGCGAAGTACCACTCTTTGAACGGACCGAAGCTAAGGTCAg < 1:472150/68‑1 (MQ=255) aCGACCCATGTCGTAAATGTAGTTGTTCGCGAAGTACCACTCTTTGAACGGACCGAAGCTAAGGTCAg < 1:128460/68‑1 (MQ=255) aCGACCCATGTCGTAAATGTAGTTGTTCGCGAAGTACCACTCTTTGAACGGACCGAAGCTAAGGTCAg < 1:1219225/68‑1 (MQ=255) aCGACCCATGTCGTAAATGTAGTTGTTCGCGAAGTACCACTCTTTGAACGGACCGAAGCTAAGGTCAg < 1:988900/68‑1 (MQ=255) aCGACCCATGTCGTAAATGTAGTTGTTCGCGAAGTACCACTCTTTGAACGGACCGAAGCTAAGGTCAg < 1:1182272/68‑1 (MQ=255) aCGACCCATGTCGTAAATGTAGTTGTTCGCGAAGTACCACTCTTTGAACGGACCGAAGCTAAGGTCAg < 1:723701/68‑1 (MQ=255) aCGACCCATGTCGTAAATGTAGTTGTTCGCGAAGTACCACTCTTTGAACGGACCGAAGCTAAGGTCAg < 1:1051840/68‑1 (MQ=255) aCGACCCATGTCGTAAATGTAGTTGTTCGCGAAGTACCACTCTTTGAACGGACCGAAGCTAAGGGCAg < 1:2237250/68‑1 (MQ=255) cGACCCATGTCGTAAATGTAGTTGTTCGCGAAGTACCACTCTTTGAACGGACCGAAGCTAAGGTCAg < 1:524091/67‑1 (MQ=255) cccATGTCGTAAATGTAGTTGTTCGCGAAGTACCACTCTTTGAACGGACCGAAGCTAAGGTCAGTATTg < 1:2509245/69‑1 (MQ=255) cccATGTCGTAAATGTAGTTGTTCGCGAAGTACCACTCTTTGAACGGACCGAAGCTAAGGTCAGTATTg < 1:2812025/69‑1 (MQ=255) cccATGTCGTAAATGTAGTTGTTCGCGAAGTACCACTCTTTGAACGGACCGAAGCTAAGGTCAGTATTg < 1:1690260/69‑1 (MQ=255) ccaaTGTCGTAAATGTAGTTGTTCGCGAAGTACCACTCTTTGAACGGACCGAAGCTAAGGTCAGTATTg < 1:418902/66‑1 (MQ=255) cATGTCGTAAATGTAGTTGTTCGCGAAGTACCACTCTTTGAACGGACCGAAGCTAAGGTCAGTATTg > 1:2113820/1‑67 (MQ=255) cATGTCGTAAATGTAGTTGTTCGCGAAGTACCACTCTTTGAACGGACCGAAGCTAAGGTCAGTATTg > 1:1176893/1‑67 (MQ=255) cATGTCGTAAATGTAGTTGTTCGAGAAGTACCACTCTTTGAACGGACCGAAGCTAAGGTCAGTATTg > 1:1872317/1‑67 (MQ=255) aaTGTAGTTGTTCGCGAAGTACCACTCTTTGAACGGACCAAAGCTAAGGTCAGTATTGGTCAGCTTGTc < 1:660837/69‑1 (MQ=255) aaTGTAGTTGTTCGCGAAGTACCACTCTTTGAACGGACCAAAGCTAAGGTCAGTATTGGTCAGCTTGTc < 1:933997/69‑1 (MQ=255) aaTGTAGTTGTTCGCGAAGTACCACTCTTTGAACGGACCAAAGCTAAGGTCAGTATTGGTCAGCTTGTc < 1:3079355/69‑1 (MQ=255) aaTGTAGTTGTTCGCGAAGTACCACTCTTTGAACGGACCAAAGCTAAGGTCAGTATTGGTCAGCTTGTc < 1:957283/69‑1 (MQ=255) aaTGTAGTTGTTCGCGAAGTACCACTCTTTGAACGGACCAAAGCTAAGGTCAGTATTGGTCAGCTTGTc < 1:1281689/69‑1 (MQ=255) aTGTAGTTGTTCGCGAAGTACCACTCTTTGAACGGACCAAAGCTAAGGTCAGTATTGGTCAGCTTGTc < 1:1520218/68‑1 (MQ=255) aTGTAGTTGTTCGCGAAGTACCACTCTTTGAACGGACCAAAGCTAAGGTCAGTATTGGTCAGCTTGTc < 1:2127926/68‑1 (MQ=255) tAGTTGTTCGCGAAGTACCACTCTTTGAACGGACCGAAGCTAAGGTCAGTATTg < 1:2015543/54‑1 (MQ=255) gttgttCGCGAAGTACCACTCTTTGAACGGACCGAAGCTAAGGTCAGTATTgg > 1:1363374/1‑53 (MQ=255) gttgttCGCGAAGTACCACTCTTTGAACGGACCGAAGCTAAGGTCAGTATTGGTCAGCTTGTCGATgg > 1:729185/1‑68 (MQ=255) gttgttCGCGAAGTACCACTCTTTGAACGGACCGAAGCTAAGGTCAGTATTGGTCAGCTTGTCGATgg > 1:2723734/1‑68 (MQ=255) gttgttCGCGAAGTACCACTCTTTGAACGGACCGAAGCTAAGGTCAGTATTGGTCAGCTTGTCGATgg > 1:2623838/1‑68 (MQ=255) gttgttCGCGAAGTACCACTCTTTGAACGGACCGAAGCTAAGGTCAGTATTGGTCAGCTTGTCGATgg > 1:291124/1‑68 (MQ=255) gttgttCGCGAAGTACCACTCTTTGAACGGACCGAAGCTAAGGTCAGTATTGGTCAGCTTGTCGATgg > 1:3076695/1‑68 (MQ=255) gttgttCGCGAAGTACCACTCTTTGAACGGACCGAAGCTAAGGTCAGTATTGGTCAGCTTGTCGATgg > 1:395221/1‑68 (MQ=255) gttgttCGCGAAGTACCACTCTTTGAACGGACCGAAGCTAAGGTCAGTATTGGTCAGCTTGTCGATgg > 1:2594194/1‑68 (MQ=255) gttgttCGCGAAGTACCACTCTTTGAACGGACCGAAGCTAAGGTCAGTATTGGTCAGCTTGTCGATgg > 1:737716/1‑68 (MQ=255) gttgttCGCGAAGTACCACTCTTTGAACGGACCGAAGCTAAGGTCAGTATTGGTCAGCTTGTCGATgg > 1:2011946/1‑68 (MQ=255) gttgttCGCGAAGTACCACTCTTTGAACGGACCGAAGCTAAGGTCAGTATTGGTCAGCTTGTCGATg > 1:2015472/1‑67 (MQ=255) gttgttCGCGAAGTACCACTCTTTGAACGGACCGAAGCTAAGGTCAGTATTGGTCACCTTGTCGATgg > 1:1966862/1‑68 (MQ=255) gttgttCGCGAAGTACCACTCTTTGAACGGACCGAAGCTAAGATCAGTATTGGTCAGCTTGTCGATgg > 1:3307298/1‑68 (MQ=255) tgttCGCGAAGTACCACTCTTTGAACGGACCGAAGCTAAGGTCAg < 1:37175/45‑1 (MQ=255) aCCACTCTTTGAACGGACCGAAGCTAAGGTCAGTATTGGTCAGCTTGTCGATGGAGAACCGTGGTTCGa > 1:2494092/1‑69 (MQ=255) aCCACTCTTTGAACGGACCGAAGCTAAGGTCAGTATTGGTCAGCTTGTCGATGGAGAAACGTGGTTCGa > 1:2799711/1‑69 (MQ=255) aCCACTCTTTGAACGGACCGAAGCTAAGGTCAGTATTGGTCAGCTTGTCGATGGAGAAACGTGGTTCGa > 1:2330711/1‑69 (MQ=255) aCCACTCTTTGAACGGACCGAAGCTAAGGTCAGTATTGGTCAGCTTGTCGATGGAGAAACGTGGTTCGa > 1:1883875/1‑69 (MQ=255) aCCACTCTTTGAACGGACCGAAGCTAAGGTCAGTATTGGTCAGCTTGTCGATGGAGAAACGTGGTTCGa > 1:2956155/1‑69 (MQ=255) aCCACTCTTTGAACGGACCGAAGCTAAGGTCAGTATTGGTCAGCTTGTCGATGGAGAAACGTGGTTCGa > 1:2997326/1‑69 (MQ=255) ccACTCTTTGAACGGACCAAAGCTAAGGTCAGTATTGGTCAGCTTGTCGATGGAGAAACGCGTTTCGAt < 1:2070/69‑1 (MQ=255) ccACTCTTTGAACGGACCAAAGCTAAGGTCAGTATTGGTCAGCTTGTCGATGGAGAAACGCGGTTCGAt < 1:371031/69‑1 (MQ=255) ccACTCTTTGAACGGACCAAAGCTAAGGTCAGTATTGGTCAGCTTGTCGATGGAGAAACGCGGTTCGAt < 1:3288073/69‑1 (MQ=255) ccACTCTTTGAACGGACCAAAGCTAAGGTCAGTATTGGTCAGCTTGTCGATGGAGAAACGCGGTTCGAt < 1:430296/69‑1 (MQ=255) ccACTCTTTGAACGGACCAAAGCTAAGGTCAGTATTGGTCAGCTTGTCGATGGAGAAACGCGGTTCGAt < 1:449847/69‑1 (MQ=255) ccACTCTTTGAACGGACCAAAGCTAAGGTCAGTATTGGTCAGCTTGTCGATGGAGAAACGCGGTTCGAt < 1:90608/69‑1 (MQ=255) ccACTCTTTGAACGGACCAAAGCTAAGGTCAGTATTGGTCAGCTTGTCGATGGAGAAACGCGGTTCGAt < 1:203437/69‑1 (MQ=255) ccACTCTTTGAACGGACCAAAGCTAAGGTCAGTATTGGTCAGCTTGTCGATGGAGAAACGCGGTTCGAt < 1:617650/69‑1 (MQ=255) ccACTCTTTGAACGGACCAAAGCTAAGGTCAGTATTGGTCAGCTTGTCGATGGAGAAACGCGGTTCGAt < 1:2407609/69‑1 (MQ=255) ccACTCTTTGAACGGACCAAAGCTAAGGTCAGTATTGGTCAGCTTGTCGATGGAGAAACGCGGTTCGAt < 1:168918/69‑1 (MQ=255) ccACTCTTTGAACGGACCAAAGCTAAGGTCAGTATTGGTCAGCTTGTCGATGGAGAAACGCGGTTCGAt < 1:2915837/69‑1 (MQ=255) ccACTCTTTGAACGGACCAAAGCTAAGGTCAGTATTGGTCAGCTTGTCGATGGAGAAACGCGGTTCGAt < 1:1921938/69‑1 (MQ=255) ccACTCTTTGAACGGACCAAAGCTAAGGTCAGTATTGGTCAGCTTGTCGATGGAGAAACGCGGTTCGAt < 1:2053986/69‑1 (MQ=255) ccACTCTTTGAACGGACCAAAGCTAAGGTCAGTATTGGTCAGCTTGTCGATGGAGAAACGCGGTTCGAt < 1:2742251/69‑1 (MQ=255) ccACTCTTTGAACGGACCAAAGCTAAGGTCAGTATTGGTCAGCTTGTCGATGGAGAAACGCGGTTCGAt < 1:2583310/69‑1 (MQ=255) ccACTCTTTGAACGGACCAAAGCTAAGGTCAGTATTGGTCAGCTTGTCGATGGAGAAACGCGGTTCGAt < 1:2702921/69‑1 (MQ=255) ccACTCTTTGAACGGACCAAAGCTAAGGTCAGTATTGGTCAGCTTGTCGATCGAGAAACGCGGTTCGAt < 1:3124731/69‑1 (MQ=255) cACTCTTTGAACGGACCAAAGCTAAGGTCAGTATTGGTCAGCTTGTCGATGGAGAAACGCGGTTCGAt < 1:1623907/68‑1 (MQ=255) cACTCTTTGAACGGACCAAAGCTAAGGTCAGTATTGGTCAGCTTGTCGATGGAGAAACGCGGTTCGAt < 1:388624/68‑1 (MQ=255) cACTCTTTGAACGGACCAAAGCTAAGGTCAGTATTGGTCAGCTTGTCGATGGAGAAACGCGGTTCGAt < 1:1980913/68‑1 (MQ=255) cACTCTTTGAACGGACCAAAGCTAAGGTCAGTATTGGTCAGCTTGTCGATGGAGAAACGCGGTTCGAt < 1:519589/68‑1 (MQ=255) tctTTGAACGGACCAAAGCTAAGGTCAGTATTGGTCAGCTTGTCGATGGAGAAACGCGGTTCGATTTc > 1:9905/1‑68 (MQ=255) tctTTGAACGGACCAAAGCTAAGGTCAGTATTGGTCAGCTTGTCGATGGAGAAACGCGGTTCGATTTc > 1:618893/1‑68 (MQ=255) tctTTGAACGGACCAAAGCTAAGGTCAGTATTGGTCAGCTTGTCGATGGAGAAACGCGGTTCGATTTc > 1:609489/1‑68 (MQ=255) tctTTGAACGGACCAAAGCTAAGGTCAGTATTGGTCAGCTTGTCGATGGAGAAACGCGGTTCGATTTc > 1:2838634/1‑68 (MQ=255) tctTTGAACGGACCAAAGCTAAGGTCAGTATTGGTCAGCTTGTCGATGGAGAAACGCGGTTCGATTTc > 1:2576087/1‑68 (MQ=255) tctTTGAACGGACCAAAGCTAAGGTCAGTATTGGTCAGCTTGTCGATGGAGAAACGCGGTTCGATTTc > 1:2324120/1‑68 (MQ=255) tctTTGAACGGACCAAAGCTAAGGTCAGTATTGGTCAGCTTGTCGATGGAGAAACGCGGTTCGATTTc > 1:2262480/1‑68 (MQ=255) tctTTGAACGGACCAAAGCTAAGGTCAGTATTGGTCAGCTTGTCGATGGAGAAACGCGGTTCGATTTc > 1:1783649/1‑68 (MQ=255) tctTTGAACGGACCAAAGCTAAGGTCAGTATTGGTCAGCTTGTCGATGGAGAAACGCGGTTCGATTTc > 1:1354297/1‑68 (MQ=255) tctTTGAACGGACCAAAGCTAAGGTCAGTATTGGTCAGCTTGTCGATGGAGAAACGCGGTTCGATTTc > 1:1212373/1‑68 (MQ=255) tctTTGAACGGACCAAAGCTAAGGTCAGTATTGGTCAGCTTGTCGATGGAGAAACGCGGTTCGATTTc > 1:1066145/1‑68 (MQ=255) ctTTGAACGGACCGAAGCTAAGGTCAGTATTGGTCAGCTTGTCGATGGAGAAACGTGGTTCGATTTcc > 1:897619/1‑68 (MQ=255) | ATCTTTATTACGACCCATGTCGTAAATGTAGTTGTTCGCGAAGTACCACTCTTTGAACGGACCGAAGCTAAGGTCAGTATTGGTCAGCTTGTCGATGGAGAAACGTGGTTCGATTTCC > minE/260066‑260183 |
| Alignment Legend |
|---|
Aligned base mismatch/match (shaded by quality score): ATCG/ATCG < 3 ≤ ATCG/ATCG < 14 ≤ ATCG/ATCG < 32 ≤ ATCG/ATCG < 36 ≤ ATCG/ATCG |
Unaligned base: atcg Masked matching base: atcg Alignment gap: ‑ Deleted base: ‑ |