| Predicted mutation | |||||||
|---|---|---|---|---|---|---|---|
| evidence | seq id | position | mutation | freq | annotation | gene | description |
| RA | minE | 260,678 | G→A | 37.9% | intergenic (‑196/+103) | tsx ← / ← yajI | nucleoside channel, receptor of phage T6 and colicin K/predicted lipoprotein |
| Read alignment evidence... | |||||||||||
|---|---|---|---|---|---|---|---|---|---|---|---|
| seq id | position | ref | new | freq | score (cons/poly) | reads | annotation | genes | product | ||
| * | minE | 260,678 | 0 | G | A | 37.9% | 45.7 / 48.3 | 79 | intergenic (‑196/+103) | tsx/yajI | nucleoside channel, receptor of phage T6 and colicin K/predicted lipoprotein |
| Reads supporting (aligned to +/- strand): ref base G (8/41); new base A (14/16); total (22/57) | |||||||||||
| Fisher's exact test for biased strand distribution p-value = 4.82e-03 | |||||||||||
| Kolmogorov-Smirnov test that lower quality scores support variant p-value = 1.00e+00 | |||||||||||
CTATCATTTACGTAATCGATTGCGTTCACGTTTACACACATTCGGGCGGGGATTGTACTGACTTTCGCCCTTGTTGCAAACTTTTACTATCAATCCAGGTGATGTAAGCAGAGTAACAAAAT > minE/260612‑260733 | cTATCATTTACGTAATCGATTGCGTTCACGTTTACACACATTTGGGCGGGGATTGTACTGACTTTCGcc > 1:800152/1‑69 (MQ=255)cTATCATTTACGTAATCGATTGCGTTCACGTTTACACACATTCGGGCGGGGATTGTACTGACTTTCGcc > 1:407254/1‑69 (MQ=255)cTATCATTTACGTAATCGATTGCGTTCACGTTTACACACATTCGGGCGGGGATTGTACTGACTTTCGc > 1:1026440/1‑68 (MQ=255) ttACGTAATCGATTGCGTTCACGTTTACACACATTCGGGCGGGGATTGTACTGACTTTCGCCCttgtt > 1:1173013/1‑68 (MQ=255) ttACGTAATCGATTGCGTTCACGTTTACAAACATTCGGGCGGGGATTGTACTGACTTTCGCCCttgtt > 1:403711/1‑68 (MQ=255) cGTAATCGATTGCGTTCACGTTTACACACATTCGGGCGGGGATTGTACTGACTTTCGCCCTTGTTGCa < 1:1593630/68‑1 (MQ=255) ttGCGTTCACGTTTACACACATTCGGGCGGGGATTGTACTGACTTTCGCCCTTGTTGCAAACTTTTAc < 1:1452563/68‑1 (MQ=255) ttGCGTTCACGTTTACACACATTCGGGCGGGGATTGTACTGACTTTCGCCCTTGTTGCAAACTTTTAc < 1:3295838/68‑1 (MQ=255) ttGCGTTCACGTTTACACACATTCGGGCGGGGATTGTACTGACTTTCGCCCTTGTTGCAAACTTTTAc < 1:716370/68‑1 (MQ=255) ttGCGTTCACGTTTACACACATTCGGGCGGGGATTGTACTGACTTTCGCCCTTGTTGCAAACTTTTAc < 1:858188/68‑1 (MQ=255) ttGCGTTCACGTTTACACACATTCGGGCGGGGATTGTACTGACTTTCGCCCTTGTTGCAAACTTTTACt < 1:131630/69‑1 (MQ=255) ttGCGTTCACGTTTACACACATTCGGGCGGGGATTGTACTGACTTTCGCCCTTGTTGCAAACTTTTACt < 1:2823563/69‑1 (MQ=255) ttGCGTTCACGTTTACACACATTCGGGCGGGGATTGTACTGACTTTCGCCCTTGTTGCAAACTTTTACt < 1:1026582/69‑1 (MQ=255) ttGCGTTCACGTTTACACACATTCGGGCGGGGATTGTACTGACTTTCGCCCTTGTTGCAAACTTTTACt < 1:1009036/69‑1 (MQ=255) ttGCGTTCACGTTTACACACATTCGGGCGGGGATTGTACTGACTTTCGCCCTTGTTGCAAACTTTTACt < 1:1305555/69‑1 (MQ=255) ttGAGTTCACGTTTACACACATTCGGGCGGGGATTGTACTGACTTTCGCCCTTGTTGCAAACTTTTACt < 1:623844/69‑1 (MQ=255) gTTCACGTTTACACACATTCGGGCGGGGATTGTACTGACTTTCGCCCTTGTTGCAAACTTTTACTATc < 1:1280146/68‑1 (MQ=255) cACGTTTACACACATTCGGGCGGGGATTGTACTGACTTTCGCCCttg < 1:1480890/47‑1 (MQ=255) cACGTTTACACACATTCGGGCGGGGATTGTACTGACTTTCGCCCttg < 1:176245/47‑1 (MQ=255) cACGTTTACACACATTCGGGCGGGGATTGTACTGACTTTCGCCCttg < 1:369245/47‑1 (MQ=255) cACGTTTACACACATTCGGGCGGGGATTGTACTGACTTTCGCCCttg < 1:3417130/47‑1 (MQ=255) cACGTTTACACACATTCGGGCGGGGATTGTACTGACTTTCGCCCttg < 1:66492/47‑1 (MQ=255) cACGTTTACACACATTCGGGCGGGGATTGTACTGACTTTCGCCCttg < 1:3032334/47‑1 (MQ=255) cACGTTTACACACATTCGGGCGGGGATTGTACTGACTTTCGCCCttg < 1:2369602/47‑1 (MQ=255) cACGTTTACACACATTCGGGCGGGGATTGTACTGACTTTCGCCCttg < 1:2348108/47‑1 (MQ=255) cACGTTTACACACATTCGGGCGGGGATTGTACTGACTTTCACCCTTGTTGCAAACTTTTACTGTCaa > 1:1409814/1‑67 (MQ=255) cACGTTTACACACATTCGGGCGGGGATTGTACTGACTTTCACCCTTGTTGCAAACTTTTACTATCaa > 1:474758/1‑67 (MQ=255) cACGTTTACACACATTCGGGCGGGGATTGTACTGACTTTCACCCTTGTTGCAAACTTTTACTATCaa > 1:913348/1‑67 (MQ=255) cACGTTTACACACATTCGGGCGGGGATTGTACTGACTTTCACCCTTGTTGCAAACTTTTACTATCaa > 1:2763718/1‑67 (MQ=255) cACGTTTACACACATTCGGGCGGGGATTGTACTGACTTTCACCCTTGTTGCAAACTTTTACTATCaa > 1:2690705/1‑67 (MQ=255) cACGTTTACACACATTCGGGCGGGGATTGTACTGACTTTCACCCTTGTTGCAAACTTTTACTATCaa > 1:2133714/1‑67 (MQ=255) cACGTTTACACACATTCGGGCGGGGATTGTACTGACTTTCACCCTTGTTGCAAACTTTTACTATCaa > 1:2118489/1‑67 (MQ=255) cACGTTTACACACATTCGGGCGGGGATTGTACTGACTTTCACCCTTGTTGCAAACTTTTACTATCaa > 1:145814/1‑67 (MQ=255) cACGTTTACACACATTCGGGCGGGGATTGTACTGACTTTCACCCTTGTTGCAAACTTTTACTATCaa > 1:135861/1‑67 (MQ=255) cACGTTTACACACATTCGGGCGGGGATTGTACTGACTTTCACCCTTGTTGCAAACTTTTACTATCaa > 1:1450157/1‑67 (MQ=255) cACGTTTACACACATTCGGGCGGGGATTGTACTGACTTTCACCCTTGTTGCAAACTTTTACTATCa > 1:1306158/1‑66 (MQ=255) cACGTTTACACACATTCGGGCGGGGATTGTACTGACTTTCACCATTGTTGCAAACTTTTACTATCaa > 1:795228/1‑67 (MQ=255) cACGTTTACACACATT‑GGGCGGGGATTGTACTGACTTTCACCCTTGTTGCAAACTTTTACTATCAATcc > 1:1118165/1‑69 (MQ=255) cACGTTTAAACACATTCGGGCGGGGATTGTACTGACTTTCACCCTTGTTGCAAACTTTTACTATCa > 1:3146316/1‑66 (MQ=255) cGTTTACACACATTCGGGCGGGGATTGTACTGACTTTCACCCTTGTTGCAAACTTTTACTATCAATcg < 1:2976991/68‑2 (MQ=255) cGTTTACACACATTCGGGCGGGGATTGTACTGACTTTCACCCTTGTTGCAAACTTTTACTATCAATcc < 1:529464/68‑1 (MQ=255) cGTTTACACACATTCGGGCGGGGATTGTACTGACTTTCACCCTTGTTGCAAACTTTTACTATCAATcc < 1:545837/68‑1 (MQ=255) cGTTTACACACATTCGGGCGGGGATTGTACTGACTTTCACCCTTGTTGCAAACTTTTACTATCAATcc < 1:727588/68‑1 (MQ=255) cGTTTACACACATTCGGGCGGGGATTGTACTGACTTTCACCCTTGTTGCAAACTTTTACTATCAATcc < 1:3433476/68‑1 (MQ=255) cGTTTACACACATTCGGGCGGGGATTGTACTGACTTTCACCCTTGTTGCAAACTTTTACTATCAATcc < 1:1933583/68‑1 (MQ=255) cGTTTACACACATTCGGGCGGGGATTGTACTGACTTTCACCCTTGTTGCAAACTTTTACTATCAATcc < 1:739466/68‑1 (MQ=255) cGTTTACACACATTCGGGCGGGGATTGTACTGACTTTCACCCTTGTTGCAAACTTTTACTATCAATcc < 1:796980/68‑1 (MQ=255) cGTTTACACACATTCGGGCGGGGATTGTACTGACTTTCACCCTTGTTGCAAACTTTTACTATCAATcc < 1:3058616/68‑1 (MQ=255) cGTTTACACACATTCGGGCGGGGATTGTACTGACTTTCACCCTTGTTGCAAACTTTTACTATCAATcc < 1:2192319/68‑1 (MQ=255) cGTTTACACACATTCGGGCGGGGATTGTACTGACTTTCACCCTTGTTGCAAACTTTTACTATCAATcc < 1:2360191/68‑1 (MQ=255) cGTTTACACACATTCGGGCGGGGATTGTACTGACTTTCACCCTTGTTGCAAACTTTTACTATCAATcc < 1:2532893/68‑1 (MQ=255) cGTTTACACACATTCGGGCGGGGATTGTACTGACTTTCACCCTTGTTGCAAACTTTTACTATCAATcc < 1:1979669/68‑1 (MQ=255) cGTTTACACACATTCGGGCGGGGATTGTACTGACTTTCACCCTTGTTGCAAACTTTTACTATCAATcc < 1:2885347/68‑1 (MQ=255) cGTTTACACACATTCGGGCGGGGATTGTACTGACTTTCACCCTTGTTGCAAACTTTTACTATCAATcc < 1:2746567/68‑1 (MQ=255) gTTTACACACATTCGGGCGGGGATTGTACTGACTTTCGCCCTTGTTGCAAACTTTTACTATCAATCCAg < 1:372095/69‑1 (MQ=255) gTTTACACACATTCGGGCGGGGATTGTACTGACTTTCGCCCTTGTTGCAAACTTTTACTATCAATCCAg < 1:2172748/69‑1 (MQ=255) gTTTACACACATTCGGGCGGGGATTGTACTGACTTTCGCCCTTGTTGCAAACTTTTACTATCAATCCAg < 1:1958318/69‑1 (MQ=255) gTTTACACACATTCGGGCGGGGATTGTACTGACTTTCGCCCTTGTTGCAAACTTTTACTATCAATCCAg < 1:1965088/69‑1 (MQ=255) gTTTACACACATTCGGGCGGGGATTGTACTGACTTTCGCCCTTGTTGCAAACTTTTACTATCAATCCAg < 1:1970036/69‑1 (MQ=255) gTTTACACACATTCGGGCGGGGATTGTACTGACTTTCACCCTTGTTGCAAACTTTTACTATCAATcc < 1:3426280/67‑1 (MQ=255) acacaTTCGGG‑GGGGATTGTACTGACTTTCGCCCTTGTTGCAAACt < 1:2752240/46‑1 (MQ=39) cacaTTCGGGCGGGGATTGTACTGACTTTCGCCCTTGTTGCAAACTTTTACTATCAATCCAGGTGATGt < 1:2212373/69‑1 (MQ=255) cacaTTCGGGCGGGGATTGTACTGACTTTCGCCCTTGTTGCAAACTTTTACTATCAATCCAGGTGATGt < 1:1348331/69‑1 (MQ=255) cacaTTCGGGCGGGGATTGTACTGACTTTCGCCCTTGTTGCAAACTTTTACTATCAATCCAGGTGATGt < 1:1492094/69‑1 (MQ=255) cacaTTCGGGCGGGGATTGTACTGACTTTCGCCCTTGTTGCAAACTTTTACTATCAATCCAGGTGATGt < 1:1868521/69‑1 (MQ=255) cacaTTCGGGCGGGGATTGTACTGACTTTCGCCCTTGTTGCAAACTTTTACTATCAATCCAGGTGATGt < 1:1917019/69‑1 (MQ=255) tCGGGCGGGGATTGTACTGACTTTCGCCCTTGTTGCAAACTTTTACTATCAATCCAGGTGATGTAAGCa < 1:1228207/69‑1 (MQ=255) cgggcgggGATTGTACTGACTTTCGCCCTTGTTGCAAACTTTTACt > 1:2025634/1‑46 (MQ=255) cgggcgggGATTGTACTGACTTTCGCCCTTGTTGCAAACTTTTACTATCAATCCAGGTGATGTAAGCag > 1:265684/1‑69 (MQ=255) cgggcgggGATTGTACTGACTTTCGCCCTTGTTGCAAACTTTTACTATCAATCCAGGTGATGTAAGCag > 1:2706629/1‑69 (MQ=255) aTTGTACTGACTTTCGCCCTTGTTGCAAACTTTTACt < 1:2624361/37‑1 (MQ=255) ttGTACTGACTTTCGCCCTTGTTGCAAACTTTTAc < 1:3048299/35‑1 (MQ=255) tGTACTGACTTTCGCCCTTGTTGCAAACTTTTACt < 1:1143460/35‑1 (MQ=255) tGTACTGACTTTCGCCCTTGTTGCAAACTTTTACTATCAATCCAGGTGATGTAAGCAGAGTAACAAAAt < 1:2952932/69‑1 (MQ=255) tGTACTGACTTTCGCCCTTGTTGCAAACTTTTACTATCAATCCAGGTGATGTAAGCAGAGTAACAAAAt < 1:2994174/69‑1 (MQ=255) tGTACTGACTTTCGCCCTTGTTGCAAACTTTTACTATCAATCCAGGTGATGTAAGCAGAGTAACAAAAt < 1:2557524/69‑1 (MQ=255) tGTACTGACTTTCGCCCTTGTTGCAAACTTTTACTATCAATCCAGGTGATGTAAGCAGAGTAACAAAAt < 1:2676341/69‑1 (MQ=255) tGTACTGACTTTCGCCCTTGTTGCAAACTTTTACTATCAATCCAGGTGATGTAAGCAGAGTAACAAAAt < 1:352411/69‑1 (MQ=255) tGTACTGACTTTCGCCCTTGTTGCAAACTTTTACTATCAATCCAGGTGATGTAAGCAGAGTAACAAAAt < 1:3084174/69‑1 (MQ=255) | CTATCATTTACGTAATCGATTGCGTTCACGTTTACACACATTCGGGCGGGGATTGTACTGACTTTCGCCCTTGTTGCAAACTTTTACTATCAATCCAGGTGATGTAAGCAGAGTAACAAAAT > minE/260612‑260733 |
| Alignment Legend |
|---|
Aligned base mismatch/match (shaded by quality score): ATCG/ATCG < 3 ≤ ATCG/ATCG < 21 ≤ ATCG/ATCG < 32 ≤ ATCG/ATCG < 36 ≤ ATCG/ATCG |
Unaligned base: atcg Masked matching base: atcg Alignment gap: ‑ Deleted base: ‑ |