| Predicted mutation | |||||||
|---|---|---|---|---|---|---|---|
| evidence | seq id | position | mutation | freq | annotation | gene | description |
| RA | minE | 287,566 | C→T | 40.5% | T70T (ACC→ACT) | lon → | DNA‑binding ATP‑dependent protease La |
| Read alignment evidence... | |||||||||||
|---|---|---|---|---|---|---|---|---|---|---|---|
| seq id | position | ref | new | freq | score (cons/poly) | reads | annotation | genes | product | ||
| * | minE | 287,566 | 0 | C | T | 40.5% | 29.8 / 46.1 | 69 | T70T (ACC→ACT) | lon | DNA‑binding ATP‑dependent protease La |
| Reads supporting (aligned to +/- strand): ref base C (25/16); new base T (8/20); total (33/36) | |||||||||||
| Fisher's exact test for biased strand distribution p-value = 1.36e-02 | |||||||||||
| Kolmogorov-Smirnov test that lower quality scores support variant p-value = 2.82e-01 | |||||||||||
GGTCGCGCAGAAAGAAGCTTCAACGGATGAGCCGGGTGTAAACGATCTTTTCACCGTCGGGACCGTGGCCTCTATATTGCAGATGCTGAAACTGCCTGACGGCACCGT > minE/287512‑287619 | ggTCGCGCAGAAAGAAGCTTCAACGGATGAGCCGGGTGTAAACGATCTTTTCACCGTCGGGACCGTGGc < 1:668775/69‑1 (MQ=255) gcAGAAAGAAGCTTCAACGGATGAGCCGGGTGTAAACGATCTTTTCACCGTCGGGACCGTGGCCTCta < 1:3159249/68‑1 (MQ=255) agaagCTTCAACGGATGAGCCGGGTTTAAACGATCTTTTCACCGTCGGGACCGTGGCCTCTATATTGCa < 1:2305033/69‑1 (MQ=255) agaagCTTCAACGGATGAGCCGGGTGTAAACGATCTTTTCACCGTCGGGACCGTGGCCTCTATATTGCa < 1:106479/69‑1 (MQ=255) agaagCTTCAACGGATGAGCCGGGTGTAAACGATCTTTTCACCGTCGGGACCGTGGCCTCTATATTGCa < 1:1202033/69‑1 (MQ=255) agaagCTTCAACGGATGAGCCGGGTGTAAACGATCTTTTCACCGTCGGGACCGTGGCCTCTATATTGCa < 1:292008/69‑1 (MQ=255) agaagCTTCAACGGATGAGCCGGGTGTAAACGATCTTTTCACCGTCGGGACCGTGGCCTCTATATTGCa < 1:2455574/69‑1 (MQ=255) agaagCTTCAACGGATGAGCCGGGTGTAAACGATCTTTTCACCGTCGGGACCGTGGCCTCTATATTGCa < 1:2344283/69‑1 (MQ=255) agaagCTTCAACGGATGAGCCGGGTGTAAACGATCTTATCACCGTCGGGACCGTGGCCTCTATATTGCa < 1:1291892/69‑1 (MQ=255) agaagCTTCAACGGATGAGCCGGGAGTAAACGATCTTATCACCGTCGGGACCGTGGCCTCTATATAGCa < 1:1959057/69‑1 (MQ=255) gaagCTTCAACGGATGAGCCGGGTGTAAACGATCTTTTCACCGTCGGGACCGTGGCCTCTATATTGCa < 1:1406592/68‑1 (MQ=255) gaagCTTCAACGGATGAGCCGGGTGTAAACGATCTTTTCACCGTCGGGACCGTGGCCTCTATATTGCa < 1:1643107/68‑1 (MQ=255) ttCAACGGATGAGCCGGGTGTAAACGATCTTTTCACCGTCGGGACCGTGGCCTCTATATTGCa < 1:1790506/63‑1 (MQ=255) cAACGGATGAGCCGGGTGTAAACGATCTTTTCACCGTCGGGACCGTGGCCTCta < 1:1642262/54‑1 (MQ=255) aCGGATGAGCCGGGTGTAAACGATCTTTTCACCGTCGGGACCGTGGCCTCTATATTGCAGATGCTGa < 1:472338/67‑1 (MQ=255) aCGGATGAGCCGGGTGTAAACGATCTTTTCACCGTCGGGACCGTGGCCTCTATATTGCAGATGCTGa < 1:2697751/67‑1 (MQ=255) gATGAGCCGGGTGTAAACGATCTTTTCCCCGTCGGGACCGTGGCCTCTATATTGCAGATGCTGCAACTg > 1:1841466/1‑69 (MQ=255) gATGAGCCGGGTGTAAACGATCTTTTCACCGTCGGGACCGTGGCCTCTATATTGCAGATGCTGAAACTg > 1:855466/1‑69 (MQ=255) gATGAGCCGGGTGTAAACGATCTTTTCACCGTCGGGACCGTGGCCTCTATATTGCAGATGCTGAAACTg > 1:188765/1‑69 (MQ=255) gATGAGCCGGGTGTAAACGATCTTTTCACCGTCGGGACCGTGGCCTCTATATTGCAGATGCTGAAACTg > 1:1147803/1‑69 (MQ=255) gATGAGCCGGGTGTAAACGATCTTTTCACCGTCGGGACCGTGGCCTCTATATTGCAGATGCTGAAACTg > 1:3146991/1‑69 (MQ=255) gATGAGCCGGGTGTAAACGATCTTTTCACCGTCGGGACCGTGGCCTCTATATTGCAGATGCTGAAACTg > 1:2562886/1‑69 (MQ=255) gATGAGCCGGGTGTAAACGATCTTTTCACCGTCGGGACCGTGGCCTCTATATTGCAGATGCTGAAACTg > 1:1492528/1‑69 (MQ=255) gATGAGCCGGGTGTAAACGATCTTTTCACCGTCGGGACCGTGGCCTCTATATTGCAGATGCTGAAACTg > 1:2327403/1‑69 (MQ=255) gATGAGCCGGGTGTAAACGATCTTTTCACCGACGGGACCGTGGCCTCTATATTGCAGATGCTGAAACTg > 1:2484347/1‑69 (MQ=255) gAGCCGGGTGTAAACGATCTTTTCACTGTCGGGACCGTGGCCTCTATATTGCAGATGCTGAAACTGCCt < 1:1406343/69‑1 (MQ=255) gAGCCGGGTGTAAACGATCTTTTCACTGTCGGGACCGTGGCCTCTATATTGCAGATGCTGAAACTGCCt < 1:1243300/69‑1 (MQ=255) gAGCCGGGTGTAAACGATCTTTTCACTGTCGGGACCGTGGCCTCTATATTGCAGATGCTGAAACTGCCt < 1:2941702/69‑1 (MQ=255) gAGCCGGGTGTAAACGATCTTTTCACTGTCGGGACCGTGGCCTCTATATTGCAGATGCTGAAACTGCCt < 1:2974740/69‑1 (MQ=255) gAGCCGGGTGTAAACGATCTTTTCACTGTCGGGACCGTGGCCTCTATATTGCAGATGCTGAAACTGCCt < 1:2601473/69‑1 (MQ=255) gAGCCGGGTGTAAACGATCTTTTCACTGTCGGGACCGTGGCCTCTATATTGCAGATGCTGAAACTGCCt < 1:374603/69‑1 (MQ=255) gAGCCGGGTGTAAACGATCTTTTCACTGTCGGGACCGTGGCCTCTATATTGCAGATGCTGAAACTGCCt < 1:3141711/69‑1 (MQ=255) gAGCCGGGTGTAAACGATCTTTTCACTGTCGGGACCGTGGCCTCTATATTGCAGATGCTGAAACTGCCt < 1:1500027/69‑1 (MQ=255) gAGCCGGGTGTAAACGATCTTTTCACTGTCGGGACCGTGGCCTCTATATTGCAGATGCTGAAACTGCCt < 1:3190697/69‑1 (MQ=255) gAGCCGGGTGTAAACGATCTTTTCACTGTCGGGACCGTGGCCTCTATATTGCAGATGCTGAAACTGCCt < 1:1846163/69‑1 (MQ=255) gAGCCGGGTGTAAACGATCTTTTCACTGTCGGGACCGTGGCCTCTATATTGCAGATGCTGAAACTGCCt < 1:3233498/69‑1 (MQ=255) gAGCCGGGTGTAAACGATCTTTTCACTGTCGGGACCGTGGCCTCTATATTGCAGATGCTGAAACTGCCt < 1:3404516/69‑1 (MQ=255) aGCCGGGTGTAAACGATCTTTTCACTGTCGGGACCGTGGCCTCTATATTGCAGATGCTGAAACTGCCt < 1:875079/68‑1 (MQ=255) gggTGTAAACGATCTTTTCACTGTCGGGACCGTGGCCTCTATATTGCAGATGCTGAAACTGCCTGACgg < 1:309169/69‑1 (MQ=255) gggTGTAAACGATCTTTTCACTGTCGGGACCGTGGCCTCTATATTGCAGATGCTGAAACTGCCTGACgg < 1:2641817/69‑1 (MQ=255) gggTGTAAACGATCTTTTCACTGTCGGGACCGTGGCCTCTATATTGCAGATGCTGAAACTGCCTGACgg < 1:3063057/69‑1 (MQ=255) gggTGTAAACGATCTTTTCACTGTCGGGACCGTGGCCTCTATATTGCAGATGCTGAAACTGCCTGACgg < 1:3060446/69‑1 (MQ=255) gggTGTAAACGATCTTTTCACTGTCGGGACCGTGGCCTCTATATTGCAGATGCTGAAACTGCCTGACgg < 1:2222268/69‑1 (MQ=255) gggTGTAAACGATCTTTTCACTGTCGGGACCGTGGCCTCTATATTGCAGATGCTGAAACTGCCTGACgg < 1:1977697/69‑1 (MQ=255) gggTGTAAACGATCTTTTCACTGTCGGGACCGTGGCCTCTATATTGCAGATGCTGAAACTGCCTGACgg < 1:1855848/69‑1 (MQ=255) aaaCGATCTTTTCACTGTCGGGACCGTGGCCTCTATATTGCAGATGCTg > 1:3390828/1‑49 (MQ=255) aaaCGATCTTTTCACTGTCGGGACCGTGGCCTCTATATTGCAGATGCTGa > 1:1750543/1‑50 (MQ=255) aaaCGATCTTTTCACTGTCGGGACCGTGGCCTCTATATTGCAGATGCTGa > 1:754892/1‑50 (MQ=255) aaaCGATCTTTTCACTGTCGGGACCGTGGCCTCTATATTGCAGATGCTGa > 1:2967874/1‑50 (MQ=255) aaaCGATCTTTTCACTGTCGGGACCGTGGCCTCTATATTGCAGATGCTGa > 1:3050556/1‑50 (MQ=255) aaaCGATCTTTTCACTGTCGGGACCGTGGCCTCTATATTGCAGATGCTGa > 1:2627744/1‑50 (MQ=255) aaaCGATCTTTTCACTGTCGGGACCGTGGCCTCTATATTGCAGATGCTGa > 1:2714490/1‑50 (MQ=255) aaaCGATCTTTTCACTGTCGGGACCGTGGCCTCTATATTGCAGATGCTGa > 1:2045295/1‑50 (MQ=255) aaCGATCTTTTCACCGTCGGGACCGTGGCCTCTATATTGCAGATGCTGaaa > 1:1116416/1‑51 (MQ=255) aaCGATCTTTTCACCGTCGGGACCGTGGCCTCTATATTGCAGATGCTGAAACTGCCTGACGGCACCGt > 1:1259294/1‑68 (MQ=255) aaCGATCTTTTCACCGTCGGGACCGTGGCCTCTATATTGCAGATGCTGAAACTGCCTGACGGCACCGt > 1:1688633/1‑68 (MQ=255) aaCGATCTTTTCACCGTCGGGACCGTGGCCTCTATATTGCAGATGCTGAAACTGCCTGACGGCACCGt > 1:2538374/1‑68 (MQ=255) aaCGATCTTTTCACCGTCGGGACCGTGGCCTCTATATTGCAGATGCTGAAACTGCCTGACGGCACCGt > 1:3040662/1‑68 (MQ=255) aaCGATCTTTTCACCGTCGGGACCGTGGCCTCTATATTGCAGATGCTGAAACTGCCTGACGGCACCGt > 1:984634/1‑68 (MQ=255) aaCGATCATTTCACCGTCGGGACCGTGGCCTCTATATTGCAGATGCTGAAACTGCCTGACGGCACCGt > 1:1255165/1‑68 (MQ=255) ttCACCGTCGGGACCGTGGCCTCTATATTGCAGATGCTGa > 1:984111/1‑40 (MQ=255) ttCACCGTCGGGACCGTGGCCTCTATATTGCAGATGCTGa > 1:993208/1‑40 (MQ=255) ttCACCGTCGGGACCGTGGCCTCTATATTGCAGATGCTGa > 1:328806/1‑40 (MQ=255) ttCACCGTCGGGACCGTGGCCTCTATATTGCAGATGCTGa > 1:2952139/1‑40 (MQ=255) ttCACCGTCGGGACCGTGGCCTCTATATTGCAGATGCTGa > 1:2778375/1‑40 (MQ=255) ttCACCGTCGGGACCGTGGCCTCTATATTGCAGATGCTGa > 1:2600531/1‑40 (MQ=255) ttCACCGTCGGGACCGTGGCCTCTATATTGCAGATGCTGa > 1:2518687/1‑40 (MQ=255) ttCACCGTCGGGACCGTGGCCTCTATATTGCAGATGCTGa > 1:1726042/1‑40 (MQ=255) ttCACCGTCGGGACCGTGGCCTCTATATTGCAGATGCTGa > 1:1106609/1‑40 (MQ=255) | GGTCGCGCAGAAAGAAGCTTCAACGGATGAGCCGGGTGTAAACGATCTTTTCACCGTCGGGACCGTGGCCTCTATATTGCAGATGCTGAAACTGCCTGACGGCACCGT > minE/287512‑287619 |
| Alignment Legend |
|---|
Aligned base mismatch/match (shaded by quality score): ATCG/ATCG < 3 ≤ ATCG/ATCG < 14 ≤ ATCG/ATCG < 32 ≤ ATCG/ATCG < 36 ≤ ATCG/ATCG |
Unaligned base: atcg Masked matching base: atcg Alignment gap: ‑ Deleted base: ‑ |