| Predicted mutation | |||||||
|---|---|---|---|---|---|---|---|
| evidence | seq id | position | mutation | freq | annotation | gene | description |
| RA | minE | 293,984 | A→G | 40.8% | G11G (GGT→GGC) | ybaX ← | predicted aluminum resistance protein |
| Read alignment evidence... | |||||||||||
|---|---|---|---|---|---|---|---|---|---|---|---|
| seq id | position | ref | new | freq | score (cons/poly) | reads | annotation | genes | product | ||
| * | minE | 293,984 | 0 | A | G | 40.8% | 61.7 / 122.8 | 164 | G11G (GGT→GGC) | ybaX | predicted aluminum resistance protein |
| Reads supporting (aligned to +/- strand): ref base A (43/54); new base G (33/34); total (76/88) | |||||||||||
| Fisher's exact test for biased strand distribution p-value = 6.33e-01 | |||||||||||
| Kolmogorov-Smirnov test that lower quality scores support variant p-value = 4.97e-01 | |||||||||||
Only 100 of 168 total aligned reads displayed.
ATGGACTTCATCATATTGTTGTAATGCCTGCACCAGACAGGTGGTGGAATCCTGACCTCCACTGAACACAACGACAGCACGTTTCATAGATAATCCTGCTTGAACAATAAAAGCGTTATGGT > minE/293930‑294051 | aTGGACTTCATCATATTGTTGTAATGCCTGCACCAGACAGGTGGTGGAATCCTGACCTCCACTGAacac > 1:1865764/1‑69 (MQ=255)aTGGACTTCATCATATTGTTGTAATGCCTGCACCAGACAGGTGGTGGAATCCTGACCTCCACTGAacac > 1:2929091/1‑69 (MQ=255) tGGACTTCATCATATTGTTGTAATGCCTGCACCAGACAGGTGGTGGAATCCTGGCCTCCACTGAacac > 1:1672001/1‑68 (MQ=255) tGGACTTCATCATATTGTTGTAATGCCTGCACCAGACAGGTGGTGGAATCCTGGCCTCCACTGAacac > 1:2500826/1‑68 (MQ=255) tGGACTTCATCATATTGTTGTAATGCCTGCACCAGACAGGTGGTGGAATCCTGGCCTCCACTGAAcaca > 1:105878/1‑69 (MQ=255) tGGACTTCATCATATTGTTGTAATGCCTGCACCAGACAGGTGGTGGAATCCTGGCCTCCACTGAAcaca > 1:1573226/1‑69 (MQ=255) tGGACTTCATCATATTGTTGTAATGCCTGCACCAGACAGGTGGTGGAATCCTGGCCTCCACTGAAcaca > 1:327132/1‑69 (MQ=255) tGGACTTCATCATATTGTTGTAATGCCTGCACCAGACAGGTGGTGGAATCCTGGCCTCCACTGAAcaca > 1:592378/1‑69 (MQ=255) tGGACTTCATCATATTGTTGTAATGCCTGCACCAGACAGGTGGTGGAATCCTGGCCTCCACTGAAcaca > 1:1764237/1‑69 (MQ=255) tGGACTTCATCATATTGTTGTAATGCCTGCACCAGACAGGTGGTGGAATCCTGGCCTCCACTGAAcaca > 1:744004/1‑69 (MQ=255) tGGACTTCATCATATTGTTGTAATGCCTGCACCAGACAGGTGGTGGAATCCTGGCCTCCACTGAAcaca > 1:244433/1‑69 (MQ=255) tGGACTTCATCATATTGTTGTAATGCCTGCACCAGACAGGTGGTGGAATCCTGGCCTCCACTGAAcaca > 1:1848132/1‑69 (MQ=255) tGGACTTCATCATATTGTTGTAATGCCTGCACCAGACAGGTGGTGGAATCCTGGCCTCCACTGAAcaca > 1:2536490/1‑69 (MQ=255) tGGACTTCATCATATTGTTGTAATGCCTGCACCAGACAGGTGGTGGAATCCTGGCCTCCACTGAAcaca > 1:2972093/1‑69 (MQ=255) tGGACTTCATCATATTGTTGTAATGCCTGAACCAGACAGGTGGTGGAATCCTGGCCTCCACTGAAcaca > 1:3121238/1‑69 (MQ=255) ggACTTCATCATATTGTTGTAATGCCTGCACCAGACAGGTGGTGGAATCCTGACCTCCACTGAAcaca > 1:1228540/1‑68 (MQ=255) ggACTTCATCATATTGTTGTAATGCCTGCACCAGACAGGTGGTGGAATCCTGACCTCCACTGAAcaca > 1:1100380/1‑68 (MQ=255) ggACTTCATCATATTGTTGTAATGCCTGCACCAGACAGGTGGTGGAATCCTGACCTCCACTGAAcaca > 1:2172783/1‑68 (MQ=255) ggACTTCATCATATTGTTGTAATGCCTGCACCAGACAGGTGGTGGAATCCTGACCTCCACTGAAcaca > 1:3415989/1‑68 (MQ=255) ggACTTCATCATATTGTTGTAATGCCTGCACCAGACAGGTGGTGGAATCCTGACCTCCACTGAAcaca > 1:417021/1‑68 (MQ=255) ttgttgTAATGCCTGCACCAGACAGGTGGTGGAATCCTGACCTCCACTGAACACAACGACAGCACGtt > 1:2277278/1‑68 (MQ=255) aTGCCTGCACCAGACAGGTGGTGGAATCCTGACCTCCACTGAACACAACGACAGCAc > 1:3314996/1‑57 (MQ=255) aTGCCTGCACCAGACAGGTGGTGGAATCCTGACCTCCACTGAACACAACGACAGCACGTTTCATAGa > 1:395020/1‑67 (MQ=255) aTGCCTGCACCAGACAGGTGGTGGAATCCTGACCTCCACTGAACACAACGACAGCACGTTTCATAGAt > 1:3359637/1‑68 (MQ=255) aTGCCTGCACCAGACAGGTGGTGGAATCCTGACCTCCACTGAACACAACGACAGCACGTTTCATAGAt > 1:1753645/1‑68 (MQ=255) aTGCCTGCACCAGACAGGTGGTGGAATCCTGACCTCCACTGAACACAACGACAGCACGTTTCATAGAt > 1:1950403/1‑68 (MQ=255) aTGCCTGCACCAGACAGGTGGTGGAATCCTGACCTCCACTGAACACAACGACAGCACGTTTCATAGAt > 1:1642401/1‑68 (MQ=255) aTGCCTGCACCAGACAGGTGGTGGAATCCTGACCTCCACTGAACACAACGACAGCACGTTTCATAGAt > 1:2398418/1‑68 (MQ=255) aTGCCTGCACCAGACAGGTGGTGGAATCCTGACCTCCACTGAACACAACGACAGCACGTTTCATAGAt > 1:2799911/1‑68 (MQ=255) aTGCCTGCACCAGACAGGTGGTGGAATCCTGACCTCCACTGAACACAACGACAGCACGTTTCATAGAt > 1:1029585/1‑68 (MQ=255) gCCTGCACCAGACAGGTGGTGGAATCCTGACCTCCACTGAACACAACGACAGCACGTTTCATAGATaa < 1:2108350/68‑1 (MQ=255) gCCTGCACCAGACAGGTGGTGGAATCCTGACCTCCACTGAACACAACGACAGCACGTTTCATAGATaa < 1:1398631/68‑1 (MQ=255) gCCTGCACCAGACAGGTGGTGGAATCCTGACCTCCACTGAACACAACGACAGCACGTTTCATAGATaa < 1:2882154/68‑1 (MQ=255) ccTGCACCAGACAGGTGGTGGAATCCTGACCTCCACTGAACACAACGACAGCACGTTTCATAGATAATc < 1:3278538/69‑1 (MQ=255) ccTGCACCAGACAGGTGGTGGAATCCTGACCTCCACTGAACACAACGACAGCACGTTTCATAGATAATc < 1:956643/69‑1 (MQ=255) aCAGGTGGTGTAATCCTGGCCTCCACTGGACACAACGACAGCACGTTTCAt < 1:360622/51‑1 (MQ=255) aCAGGTGGTGGAATCCTGGCCTCCACTGAACACAACGACAGCACGTTTCAt < 1:3363172/51‑1 (MQ=255) aCAGGTGGTGGAATCCTGGCCTCCACTGAACACAACGACAGCACGTTTCAt < 1:843171/51‑1 (MQ=255) aCAGGTGGTGGAATCCTGGCCTCCACTGAACACAACGACAGCACGTTTCAt < 1:2707298/51‑1 (MQ=255) aCAGGTGGTGGAATCCTGGCCTCCACTGAACACAACGACAGCACGTTTCAt < 1:802631/51‑1 (MQ=255) aCAGGTGGTGGAATCCTGGCCTCCACTGAACACAACGACAGCACGTTTCAt < 1:76629/51‑1 (MQ=255) aCAGGTGGTGGAATCCTGGCCTCCACTGAACACAACGACAGCACGTTTCAt < 1:1224602/51‑1 (MQ=255) aCAGGTGGTGGAATCCTGGCCTCCACTGAACACAACGACAGCACGTTTCAt < 1:1285308/51‑1 (MQ=255) aCAGGTGGTGGAATCCTGGCCTCCACTGAACACAACGACAGCACGTTTCAt < 1:714622/51‑1 (MQ=255) aCAGGTGGTGGAATCCTGGCCTCCACTGAACACAACGACAGCACGTTTCAt < 1:140061/51‑1 (MQ=255) aCAGGTGGTGGAATCCTGGCCTCCACTGAACACAACGACAGCACGTTTCAt < 1:2245439/51‑1 (MQ=255) aCAGGTGGTGGAATCCTGGCCTCCACTGAACACAACGACAGCACGTTTCAt < 1:3131115/51‑1 (MQ=255) aCAGGTGGTGGAATCCTGGCCTCCACTGAACACAACGACAGCACGTTTCAt < 1:3148211/51‑1 (MQ=255) aCAGGTGGTGGAATCCTGGCCTCCACTGAACACAACGACAGCACGTTTCAt < 1:574291/51‑1 (MQ=255) aCAGGTGGTGGAATCCTGGCCTCCACTGAACACAACGACAGCACGTTTCAt < 1:49047/51‑1 (MQ=255) aCAGGTGGTGGAATCCTGGCCTCCACTGAACACAACGACAGCACGTTTCAt < 1:456901/51‑1 (MQ=255) aCAGGTGGTGGAATCCTGGCCTCCACTGAACACAACGACAGCACGTTTCAt < 1:2116223/51‑1 (MQ=255) aCAGGTGGTGGAATCCTGGCCTCCACTGAACACAACGACAGCACGTTTCAt < 1:445859/51‑1 (MQ=255) aCAGGTGGTGGAATCCTGGCCTCCACTGAACACAACGACAGCACGTTTCAt < 1:1673689/51‑1 (MQ=255) aCAGGTGGTGGAATCCTGGCCTCCACTGAACACAACGACAGCACGTTTCAt < 1:3351593/51‑1 (MQ=255) aCAGGTGGTGGAATCCTGGCCTCCACTGAACACAACGACAGCACGTTTCAt < 1:1894683/51‑1 (MQ=255) gtggtgGAATCCTGACCTCCACTGAACACAACGACAGCACGTTTCATAGATAATCCTGCTTGAACAAt > 1:3042836/1‑68 (MQ=255) gtggtgGAATCCTGACCTCCACTGAACACAACGACAGCACGTTTCATAGATAATCCTGCTTGAACAAt > 1:903041/1‑68 (MQ=255) tggtggAATCCTGACCTCCACTGAACACAACGACAGCACGTTTCATAGATAATCCTGCTTGAACAAt > 1:1339044/1‑67 (MQ=255) gAATCCTGGCCTCCACTGAACACAACGACAGCACGTTTCAt < 1:1007812/41‑1 (MQ=255) aTCCTGACCTCCACTGAACACAACGACAGCACGTTTCATAGATAATCCTGCTTGAACAATAAAAGCGt < 1:1470841/68‑1 (MQ=255) aTCCTGACCTCCACTGAACACAACGACAGCACGTTTCATAGATAATCCTGCTTGAACAATAAAAGCGt < 1:3376394/68‑1 (MQ=255) aTCCTGACCTCCACTGAACACAACGACAGCACGTTTCATAGATAATCCTGCTTGAACAATAAAAGCGt < 1:2851069/68‑1 (MQ=255) aTCCTGACCTCCACTGAACACAACGACAGCACGTTTCATAGATAATCCTGCTTGAACAATAAAAGCGt < 1:407343/68‑1 (MQ=255) aTCCTGACCTCCACTGAACACAACGACAGCACGTTTCATAGATAATCCTGCTTGAACAATAAAAGCGt < 1:1666900/68‑1 (MQ=255) aTCCTGACCTCCACTGAACACAACGACAGCACGTTTCATAGATAATCCTGCTTGAACAATAAAAGCGt < 1:1559409/68‑1 (MQ=255) aTCCTGACCTCCACTGAACACAACGACAGCACGTTTCATAGATAATCCTGCTTGAACAATAAAAGCGt < 1:2141916/68‑1 (MQ=255) aTCCTGACCTCCACTGAACACAACGACAGCACGTTTCATAGATAATCCTGCTTGAACAATAAAAGCGt < 1:1318706/68‑1 (MQ=255) aTCCTGACCTCCACTGAACACAACGACAGCACGTTTCATAGATAATCCTGCTTGAACAATAAAAGCGt < 1:103204/68‑1 (MQ=255) aTCCTGACCTCCACTGAACACAACGACAGCACGTTTCATAGATAATCCTGCTTGAACAATAAAAGCGt < 1:1021779/68‑1 (MQ=255) aTCCTGACCTCCACTGAACACAACGACAGCACGTTTCATAGATAATCCTGCTTGAACAATAAAAGCGt < 1:2345806/68‑1 (MQ=255) aTCCTGACCTCCACTGAACACAACGACAGCACGTTTCATAGATAATCCTGCTTGAACAATAAAAGCGt < 1:940534/68‑1 (MQ=255) aTCCTGACCTCCACTGAACACAACGACAGCACGTTTCATAGATAATCCTGCTTGAACAATAAAAGCGt < 1:3003757/68‑1 (MQ=255) aTCCTGACCTCCACTGAACACAACGACAGCACGTTTCATAGATAATCCTGCTTGAACAATAAAAGCGt < 1:2690818/68‑1 (MQ=255) tCCTGACCTCCACTGAACACAACGACAGCACGTTTCATAGATAATCCTGCTTGAACAATa < 1:1320524/60‑1 (MQ=255) tCCTGACCTCCACTGAACACAACGACAGCACGTTTCATAGATAATCCTGCTTGAACAATa < 1:1720550/60‑1 (MQ=255) tCCTGACCTCCACTGAACACAACGACAGCACGTTTCATAGATAATCCTGCTTGAACAATa < 1:1508566/60‑1 (MQ=255) tCCTGACCTCCACTGAACACAACGACAGCACGTTTCATAGATAATCCTGCTTGAACAATa < 1:1830734/60‑1 (MQ=255) tCCTGACCTCCACTGAACACAACGACAGCACGTTTCATAGATAATCCTGCTTGAACAATa < 1:1833159/60‑1 (MQ=255) tCCTGACCTCCACTGAACACAACGACAGCACGTTTCATAGATAATCCTGCTTGAACAATa > 1:2045625/1‑60 (MQ=255) tCCTGACCTCCACTGAACACAACGACAGCACGTTTCATAGATAATCCTGCTTGAACAATa < 1:2112405/60‑1 (MQ=255) tCCTGACCTCCACTGAACACAACGACAGCACGTTTCATAGATAATCCTGCTTGAACAATa < 1:2230234/60‑1 (MQ=255) tCCTGACCTCCACTGAACACAACGACAGCACGTTTCATAGATAATCCTGCTTGAACAATa < 1:2168586/60‑1 (MQ=255) tCCTGACCTCCACTGAACACAACGACAGCACGTTTCATAGATAATCCTGCTTGAACAATa < 1:3247722/60‑1 (MQ=255) tCCTGACCTCCACTGAACACAACGACAGCACGTTTCATAGATAATCCTGCTTGAACAATa < 1:3212597/60‑1 (MQ=255) cTGACCTCCACTGAACACAACGACAGCACGTTTCATAGa < 1:2073690/39‑1 (MQ=255) cTGACCTCCACTGAACACAACGACAGCACGTTTCATAGa < 1:1508913/39‑1 (MQ=255) cTGACCTCCACTGAACACAACGACAGCACGTTTCATAGATAATCCTGCTTGAACAATAAAAGCGTTAt > 1:2197759/1‑68 (MQ=255) cTGACCTCCACTGAACACAACGACAGCACGTTTCATAGATAATCCTGCTTGAACAATAAAAGCGTTAt > 1:81919/1‑68 (MQ=255) cTGACCTCCACTGAACACAACGACAGCACGTTTCATAGATAATCCTGCTTGAACAATAAAAGCGTTAt > 1:1159512/1‑68 (MQ=255) cTGACCTCCACTGAACACAACGACAGCACGTTTCATAGATAATCCTGCTTGAACAATAAAAGCGTTAt > 1:3186474/1‑68 (MQ=255) cTGACCTCCACTGAACACAACGACAGCACGTTTCATAGATAATCCTGCTTGAACAATAAAAGCGTTAt > 1:510613/1‑68 (MQ=255) cTGACCTCCACTGAACACAACGACAGCACGTTTCATAGATAATCCTGCTTGAACAATAAAAGCGTTAt > 1:1533124/1‑68 (MQ=255) cTGACCTCCACTGAACACAACGACAGCACGTTTCATAGATAATCCTGCTTGAACAATAAAAGCGTTAt > 1:3314162/1‑68 (MQ=255) gACCTCCACTGAACACAACGACAGCACGTTTCATAGATAATCCTGCTTGAACAATAAAAGCGTTATGGt < 1:888102/69‑1 (MQ=255) gACCTCCACTGAACACAACGACAGCACGTTTCATAGATAATCCTGCTTGAACAATAAAAGCGTTATGGt < 1:1002751/69‑1 (MQ=255) gACCTCCACTGAACACAACGACAGCACGTTTCATAGATAATCCTGCTTGAACAATAAAAGCGTTATGGt < 1:1088112/69‑1 (MQ=255) gACCTCCACTGAACACAACGACAGCACGTTTCATAGATAATCCTGCTTGAACAATAAAAGCGTTATGGt < 1:1886762/69‑1 (MQ=255) aCCTCCACTGAACACAACGACAGCACGTTTCATAGATAATCCTGCTTGAACAATAAAAGCGt > 1:439856/1‑62 (MQ=255) aCCTCCACTGAACACAACGACAGCACGTTTCATAGATAATCCTGCTTGAACAATAAAAGCGt > 1:2359636/1‑62 (MQ=255) | ATGGACTTCATCATATTGTTGTAATGCCTGCACCAGACAGGTGGTGGAATCCTGACCTCCACTGAACACAACGACAGCACGTTTCATAGATAATCCTGCTTGAACAATAAAAGCGTTATGGT > minE/293930‑294051 |
| Alignment Legend |
|---|
Aligned base mismatch/match (shaded by quality score): ATCG/ATCG < 3 ≤ ATCG/ATCG < 27 ≤ ATCG/ATCG < 32 ≤ ATCG/ATCG < 36 ≤ ATCG/ATCG |
Unaligned base: atcg Masked matching base: atcg Alignment gap: ‑ Deleted base: ‑ |