| Predicted mutation | |||||||
|---|---|---|---|---|---|---|---|
| evidence | seq id | position | mutation | freq | annotation | gene | description |
| RA | minE | 303,976 | A→T | 35.3% | P43P (CCA→CCT) | ybaY → | predicted outer membrane lipoprotein |
| Read alignment evidence... | |||||||||||
|---|---|---|---|---|---|---|---|---|---|---|---|
| seq id | position | ref | new | freq | score (cons/poly) | reads | annotation | genes | product | ||
| * | minE | 303,976 | 0 | A | T | 35.3% | 87.4 / 80.1 | 99 | P43P (CCA→CCT) | ybaY | predicted outer membrane lipoprotein |
| Reads supporting (aligned to +/- strand): ref base A (34/30); new base T (7/28); total (41/58) | |||||||||||
| Fisher's exact test for biased strand distribution p-value = 1.45e-03 | |||||||||||
| Kolmogorov-Smirnov test that lower quality scores support variant p-value = 1.00e+00 | |||||||||||
AAAAGCGCGGATATTCAGACGCCAGCACCGGCTGCAAATACGTCTATTTCAGCAACACAACAACCAGCTATCCAGCAACCGAATGTCTCCGGTACCGTCTGGATCCGTCAGAAAGTCGCACTGCCGCCTGA > minE/303911‑304041 | aaaaGCGCGGATATTCAGACGCCAGCACCGGCTGCAAATACGTCTATTTCAGCAACACAACAACCAGc < 1:2974608/68‑1 (MQ=255) aaaGCGCGGATATTCAGACGCCAGCACCGGCTGCAAATACGTCTATTTCAGCAACACAACAACCAGCTa > 1:2998097/1‑69 (MQ=255) aaaGCGCGGATATTCAGACGCCAGCACCGGCTGCAAATACGTCTATTTCAGCAACACAACAACCAGCTa > 1:1438514/1‑69 (MQ=255) ggATATTCAGACGCCAGCACCGGCTGCAAATACGTCTATTTCAGCAACACAACAACCTGCTATCCAGCa > 1:209330/1‑69 (MQ=255) ggATATTCAGACGCCAGCACCGGCTGCAAATACGTCTATTTCAGCAACACAACAACCTGCTATCCAGCa > 1:997051/1‑69 (MQ=255) ggATATTCAGACGCCAGCACCGGCTGCAAATACGTCTATTTCAGCAACACAACAACCTGCTATCCAGCa > 1:2071125/1‑69 (MQ=255) ggATATTCAGACGCCAGCACCGGCTGCAAATACGTCTATTTCAGCAACACAACAACCTGCTATCCAGCa > 1:235378/1‑69 (MQ=255) ggATATTCAGACGCCAGCACCGGCTGCAAATACGTCTATTTCAGCAACACAACAACCTGCTATCCAGCa > 1:2398135/1‑69 (MQ=255) ggATATTCAGACGCCAGCACCGGCTGCAAATACGTCTATTTCAGCAACACAACAACCTGCTATCCAGCa > 1:2453390/1‑69 (MQ=255) ggATATTCAGACGCCAGCACCGGCTGCAAATACGTCTATTTCAACAACACAACAACCTGCTATCCAGc > 1:2834150/1‑68 (MQ=255) ttCAGACGCCAGCACCGGCTGCAAATACGTCTATTTCAGCAACACAACAACCAGCTATCCAGCAACCGa < 1:2333267/69‑1 (MQ=255) ttCAGACGCCAGCACCGGCTGCAAATACGTCTATTTCAGCAACACAACAACCAGCTATCCAGCAACCGa < 1:2754209/69‑1 (MQ=255) ttCAGACGCCAGCACCGGCTGCAAATACGTCTATTTCAGCAACACAACAACCAGCTATCCAGCAACCGa < 1:3362129/69‑1 (MQ=255) tCAGACGCCAGCACCGGCTGCAAATACGTCTATTTCAGCAACACAACAACCAGCTATCCAGCAACCGa < 1:927976/68‑1 (MQ=255) gCACCGGCTGCAAATACGTCTATTTCAGCAACACAACAACCAGCTATCCAGCAACCGAATGTCTCCGGt < 1:2658484/69‑1 (MQ=255) aCCGGCTGCAAATACGTCTATTTCAGCAACACAACAACCAGCTATCCAGCAACCGAATGTCTCCGGTAc > 1:998233/1‑69 (MQ=255) aCCGGCTGCAAATACGTCTATTTCAGCAACACAACAACCAGCTATCCAGCAACCGAATGTCTCCGGTAc > 1:1253413/1‑69 (MQ=255) aaTACGTCTATTTCAGCAACACAACAACCAGCTATCCAGCAACCGAATGTCTCCGGTACCGTCTGGa < 1:360607/67‑1 (MQ=255) aaTACGTCTATTTCAGCAACACAACAACCAGCTATCCAGCAACCGAATGTCTCCGGTACCGTCTGGa < 1:1126288/67‑1 (MQ=255) aaTACGTCTATTTCAGCAACACAACAACCAGCTATCCAGCAACCGAATGTCTCCGGTACCGTCTGGa < 1:894952/67‑1 (MQ=255) aaTACGTCTATTTCAGCAACACAACAACCAGCTATCCAGCAACCGAATGTCTCCGGTACCGTCTGGa < 1:1853084/67‑1 (MQ=255) aaTACGTCTATTTCAGCAACACAACAACCAGCTATCCAGCAACCGAATGTCTCCGGTACCGTCTGGa < 1:2781563/67‑1 (MQ=255) aaTACGTCTATTTCAGCAACACAACAACCAGCTATCCAGCAACCGAATGTCTCCGGTACCGTCTGGa < 1:1277740/67‑1 (MQ=255) aaTACGTCTATTTCAGCAACACAACAACCAGCTATCCAGCAACCGAATGTCTCCGGTACCGTCTGGa < 1:652733/67‑1 (MQ=255) aaTACGTCTATTTCAGCAACACAACAACCAGCTATCCAGCAACCGAATGTCTCCGGTACCGTCTGGa < 1:319706/67‑1 (MQ=255) aaTACGTCTATTTCAGCAACACAACAACCAGCTATCCAGCAACCGAATGTCTCCGGTACCGTCTGGa < 1:3173687/67‑1 (MQ=255) aaTACGTCTATTTCAGAAACACAACAACCAGCTATCCAGCAACCGAATGTCTCCGGTACCGTCTGGa < 1:1143169/67‑1 (MQ=255) tACGTCTATTTCAGCAACACAACAACCAGCTATCCAGCAACCGAATGTCTCCGGTACCGTCTGGATcc > 1:154634/1‑68 (MQ=255) tACGTCTATTTCAGCAACACAACAACCAGCTATCCAGCAACCGAATGTCTCCGGTACCGTCTGGATcc > 1:1738012/1‑68 (MQ=255) tACGTCTATTTCAGCAACACAACAACCAGCTATCCAGCAACCGAATGTCTCCGGTACCGTCTGGATcc > 1:309863/1‑68 (MQ=255) tACGTCTATTTCAGCAACACAACAACCAGCTATCCAGCAACCGAATGTCTCCGGTACCGTCTGGATcc > 1:1234915/1‑68 (MQ=255) tACGTCTATTTCAGCAACACAACAACCAGCTATCCAGCAACCGAATGTCTCCGGTACCGTCTGGATcc > 1:882990/1‑68 (MQ=255) tACGTCTATTTCAGCAACACAACAACCAGCTATCCAGCAACCGAATGTCTCCGGTACCGTCTGGATcc > 1:2022393/1‑68 (MQ=255) aCGTCTATTTCAGCAACACAACAACCAGCTATCCAg > 1:275153/1‑36 (MQ=255) aCGTCTATTTCAGCAACACAACAACCAGCTATCCAGCAACCGAATGTCTCCGGTACCGTCTGGATcc > 1:2530611/1‑67 (MQ=255) aCGTCTATTTCAGCAACACAACAACCAGCTATCCAGCAACCGAATGTCTCCGGTACCGTCTGGATcc > 1:874649/1‑67 (MQ=255) aCGTCTATTTCAGCAACACAACAACCAGCTATCCAGCAACCGAATGTCTCCGGTACCGTCTGGATcc > 1:884479/1‑67 (MQ=255) aCGTCTATTTCAGCAACACAACAACCAGCTATCCAGCAACCGAATGTCTCCGGTACCGTCTGGATcc > 1:271248/1‑67 (MQ=255) aCGTCTATTTCAGCAACACAACAACCAGCTATCCAGCAACCGAATGTCTCCGGTACCGTCTGGATcc > 1:2773359/1‑67 (MQ=255) aCGTCTATTTCAGCAACACAACAACCAGCTATCCAGCAACCGAATGTCTCCGGTACCGTCTGGATcc > 1:1412928/1‑67 (MQ=255) aCGTCTATTTCAGCAACACAACAACCAGCTATCCAGCAACCGAATGTCTCCGGTACCGTCTGGATcc > 1:1651648/1‑67 (MQ=255) aCGTCTATTTCAGCAACACAACAACCAGCTATCCAGCAACCGAATGTCTCCGGTACCGTCTGGATcc > 1:146782/1‑67 (MQ=255) aCGTCTATTTCAGCAACACAACAACCAGCTATCCAGCAACCGAATGTCTCCGGTACCGTCTGGATcc > 1:1931956/1‑67 (MQ=255) aCGTCTATTTCAGCAACACAACAACCAGCTATCCAGCAACCGAATGTCTCCGGTACCGTCTGGATcc > 1:1232952/1‑67 (MQ=255) aCGTCTATTTCAGCAACACAACAACCAGCTATCCAGCAACCGAATGTCT‑‑GGTACCGTCTGGATCCGTc > 1:731874/1‑68 (MQ=255) gTCTATTTCAGCAACACAACAACCAGCTATCCAGCAACCGAATGTATCCGGTACCGTCTGGa < 1:2440078/62‑1 (MQ=255) tATTTCAGCAACACAACAACCAGCTATCCAGCAACCGAATGTCTCCGGTACGGTCTGGATCCGTCa > 1:534549/1‑66 (MQ=255) aGCAACACAACAACCAGCTATCCAGCAACCGAATGTCTCCGGTACCGTCTGGATCCGTCAGAAAGTCg < 1:1136099/68‑1 (MQ=255) gCAACACAACAACCAGCTATCCAGCAACCGAATGTCTCCGGTACCGTCTGGATCCGTCAGAAAGTCg < 1:377275/67‑1 (MQ=255) gCAACACAACAACCAGCTATCCAGCAACCGAATGTCTCCGGTACCGTCTGGATCCGTCAGAAAGTCGc < 1:1504960/68‑1 (MQ=255) caacacaacaACCTGCTATCCAGCAACCGAATGTCTCCGGTACCGTTTGGATCCGTCAGAAAGTCGCAc < 1:3406731/69‑1 (MQ=255) caacacaacaACCTGCTATCCAGCAACCGAATGTCTCCGGTACCGTTTGGATCCGTCAGAAAGTCGCAc < 1:1542306/69‑1 (MQ=255) caacacaacaACCTGCTATCCAGCAACCGAATGTCTCCGGTACCGTTTGGATCCGTCAGAAAGTCGCAc < 1:290869/69‑1 (MQ=255) caacacaacaACCTGCTATCCAGCAACCGAATGTCTCCGGTACCGTTTGGATCCGTCAGAAAGTCGCAc < 1:1476867/69‑1 (MQ=255) caacacaacaACCTGCTATCCAGCAACCGAATGTCTCCGGTACCGTTTGGATCCGTCAGAAAGTCGCAc < 1:3015100/69‑1 (MQ=255) caacacaacaACCTGCTATCCAGCAACCGAATGTCTCCGGTACCGTTTGGATCCGTCAGAAAGTCGCAc < 1:961361/69‑1 (MQ=255) caacacaacaACCTGCTATCCAGCAACCGAATGTCTCCGGTACCGTTTGGATCCGTCAGAAAGTCGCAc < 1:1447164/69‑1 (MQ=255) caacacaacaACCTGCTATCCAGCAACCGAATGTCTCCGGTACCGTTTGGATCCGTCAGAAAGTCGCAc < 1:3233423/69‑1 (MQ=255) caacacaacaACCTGCTATCCAGCAACCGAATGTCTCCGGTACCGTTTGGATCCGTCAGAAAGTCGCAc < 1:1424771/69‑1 (MQ=255) caacacaacaACCTGCTATCCAGCAACCGAATGTCTCCGGTACCGTTTGGATCCGTCAGAAAGTCGCAc < 1:1160640/69‑1 (MQ=255) caacacaacaACCTGCTATCCAGCAACCGAATGTCTCCGGTACCGTTTGGATCCGTCAGAAAGTCGCAc < 1:1057705/69‑1 (MQ=255) caacacaacaACCTGCTATCCAGCAACCGAATGTCTCCGGTACCGTTTGGATCCGTCAGAAAGTCGCAc < 1:443107/69‑1 (MQ=255) caacacaacaACCTGCTATCCAGCAACCGAATGTCTCCGGTACCGTTTGGATCCGTCAGAAAGTCGCAc < 1:1341427/69‑1 (MQ=255) caacacaacaACCTGCTATCCAGCAACCGAATGTCTCCGGTACCGTTTGGATCCGTCAGAAAGTCGCAc < 1:1267659/69‑1 (MQ=255) caacacaacaACCTGCTATCCAGCAACCGAATGTCTCCGGTACCGTTTGGATCCGTCAGAAAGTCGCAc < 1:2722388/69‑1 (MQ=255) caacacaacaACCTGCTATCCAGCAACCGAATGTCTCCGGTACCGTTTGGATCCGTCAGAAAGTCGCAc < 1:1932365/69‑1 (MQ=255) caacacaacaACCTGCTATCCAGCAACCGAATGTCTCCGGTACCGTTTGGATCCGTCAGAAAGTCGCAc < 1:2556817/69‑1 (MQ=255) caacacaacaACCTGCTATCCAGCAACCGAATGTCTCCGGTACCGTTTGGATCCGTCAGAAAGTCGCAc < 1:2623785/69‑1 (MQ=255) caacacaacaACCTGCTATCCAGCAACCGAATGTCTCCGGTACCGTTTGGATCCGTCAGAAAGTCGCAc < 1:2436842/69‑1 (MQ=255) caacacaacaACCTGCTATCCAGCAACCGAATGTCTCCGGTACCGTTTGGATCCGTCAGAAAGTCGCAc < 1:2716327/69‑1 (MQ=255) caacacaacaACCTGCTATCCAGCAACCGAATGTCTCCGGTACCGTTTGGATCCGTCAGAAAGTCGCAc < 1:2046001/69‑1 (MQ=255) caacacaacaACCTGCTATCCAGCAACCGAATGTCTCCGGTACCGTTTGGATCCGTCAGAAAGTCGCAc < 1:1748026/69‑1 (MQ=255) caacacaacaACCTGCTATCCAGCAACCGAATGTCTCCGGTACCGTTTGGATCCGTCAGAAAGTCGCAc < 1:22183/69‑1 (MQ=255) caacacaacaACCTGCTATCCAGCAACCGAATGTCTCCGGTACCGTTTGGATCCGTCAGAAAGTCGCAc < 1:2755731/69‑1 (MQ=255) caacacaacaACCTGCTATCCAGCAACCGAATGTCTCCGGTACCGTTTGGATCCGTCAGAAAGTCGCAc < 1:2198813/69‑1 (MQ=255) caacacaacaACCTGCTATCCAGCAACCGAATGTCTCCGGTACCGTTTGGATCCGTCAGAAAGTCGCAc < 1:2787584/69‑1 (MQ=255) aacacaacaACCTGCTATCCAGCAACCGAATGTCTCCGGTACCGTTTGGATCCGTCAGAAAGTCGCAc < 1:1224574/68‑1 (MQ=255) aacacaacaACCTGCTATCCAGCAACCGAATGTCTCCGGTACCGTTTGGATCCGTCAGAAAGTCGCAc < 1:399240/68‑1 (MQ=255) acaacaACCAGCTATCCAGCAACCGAATGTCTCCg > 1:968041/1‑35 (MQ=255) acaacaACCAGCTATCCAGCAACCGAATGTCTCCGGTACCGTCTGGATCCGTCAGAAAGTCGCACTgcc > 1:2766715/1‑69 (MQ=255) acaacaACCAGCTATCCAGCAACCGAATGTCTCCGGTACCGTCTGGATCCGTCAGAAAGTCGCACTgcc < 1:625711/69‑1 (MQ=255) acaacaACCAGCTATCCAGCAACCGAATGTCTCCGGTACCGTCTGGATCCGTCAGAAAGTCGCACTgcc < 1:2664248/69‑1 (MQ=255) acaacCAGCTATCCAGCAACCGAATGTCTCCGGTACCGTCTGGATCCGTCAGAAAGTCGCACTgccgc > 1:208318/1‑68 (MQ=255) acaacCAGCTATCCAGCAACCGAATGTCTCCGGTACCGTCTGGATCCGTCAGAAAGTCGCACTgccgc > 1:2181245/1‑68 (MQ=255) acaacCAGCTATCCAGCAACCGAATGTCTCCGGTACCGTCTGGATCCGTCAGAAAGTCGCACTgccgc > 1:561802/1‑68 (MQ=255) acaacCAGCTATCCAGCAACCGAATGTCTCCGGTACCGTCTGGATCCGTCAGAAAGTCGCACTgccgc > 1:1004710/1‑68 (MQ=255) acaacCAGCTATCCAGCAACCGAATGTCTCCGGTACCGTCTGGATCCGTCAGAAAGTCGCACTgccgc > 1:347689/1‑68 (MQ=255) acaacCAGCTATCCAGCAACCGAATGTCTCCGGTACCGTCTGGATCCGTCAGAAAGTCGCACTgccgc > 1:1896469/1‑68 (MQ=255) acaacCAGCTATCCAGCAACCGAATGTCTCCGGTACCGTCTGGATCCGTCAGAAAGTCGCACTgccgc > 1:1747145/1‑68 (MQ=255) acaacCAGCTATCCAGCAACCGAATGTCTCCGGTACCGTCTGGATCCGTCAGAAAGTCGCACTgccgc > 1:2823839/1‑68 (MQ=255) acaacCAGCTATCCAGCAACCGAATGTCTCCGGTACCGTCTGGATCCGTCAGAAAGTCGCACTgcc > 1:280072/1‑66 (MQ=255) acCAGCTATCCAGTAACCGAATGTCTCCGGTACCGTCTGGATCCGTCAGAAAGTCGCACTGCCGCCTGa < 1:2325156/69‑1 (MQ=255) acCAGCTATCCAGCAACCGAATGTCTCCGGTACCGTCTGGATCCGTCAGAAAGTCGCACTGCCGCCTGa < 1:3338033/69‑1 (MQ=255) acCAGCTATCCAGCAACCGAATGTCTCCGGTACCGTCTGGATCCGTCAGAAAGTCGCACTGCCGCCTGa < 1:1988961/69‑1 (MQ=255) acCAGCTATCCAGCAACCGAATGTCTCCGGTACCGTCTGGATCCGTCAGAAAGTCGCACTGCCGCCTGa < 1:1434170/69‑1 (MQ=255) acCAGCTATCCAGCAACCGAATGTCTCCGGTACCGTCTGGATCCGTCAGAAAGTCGCACTGCCGCCTGa < 1:2724072/69‑1 (MQ=255) acCAGCTATCCAGCAACCGAATGTCTCCGGTACCGTCTGGATCCGTCAGAAAGTCGCACTGCCGCCTGa < 1:3059122/69‑1 (MQ=255) acCAGCTATCCAGCAACCGAATGTCTCCGGTACCGTCTGGATCCGTCAGAAAGTCGCACTGCCGCCTGa < 1:1161153/69‑1 (MQ=255) acCAGCTATCCAGCAACCGAATGTCTCCGGTACCGTCTGGATCCGTCAGAAAGTCGCACTGCCGCCTGa < 1:1656218/69‑1 (MQ=255) | AAAAGCGCGGATATTCAGACGCCAGCACCGGCTGCAAATACGTCTATTTCAGCAACACAACAACCAGCTATCCAGCAACCGAATGTCTCCGGTACCGTCTGGATCCGTCAGAAAGTCGCACTGCCGCCTGA > minE/303911‑304041 |
| Alignment Legend |
|---|
Aligned base mismatch/match (shaded by quality score): ATCG/ATCG < 3 ≤ ATCG/ATCG < 21 ≤ ATCG/ATCG < 32 ≤ ATCG/ATCG < 36 ≤ ATCG/ATCG |
Unaligned base: atcg Masked matching base: atcg Alignment gap: ‑ Deleted base: ‑ |