Predicted mutation | |||||||
---|---|---|---|---|---|---|---|
evidence | seq id | position | mutation | freq | annotation | gene | description |
RA | minE | 316,042 | T→A | 44.5% | S346S (TCT→TCA) | kefA → | fused mechanosensitive channel proteins |
Read alignment evidence... | |||||||||||
---|---|---|---|---|---|---|---|---|---|---|---|
seq id | position | ref | new | freq | score (cons/poly) | reads | annotation | genes | product | ||
* | minE | 316,042 | 0 | T | A | 44.5% | 37.5 / 117.2 | 110 | S346S (TCT→TCA) | kefA | fused mechanosensitive channel proteins |
Reads supporting (aligned to +/- strand): ref base T (45/16); new base A (25/24); total (70/40) | |||||||||||
Fisher's exact test for biased strand distribution p-value = 1.71e-02 | |||||||||||
Kolmogorov-Smirnov test that lower quality scores support variant p-value = 1.00e+00 |
Only 100 of 110 total aligned reads displayed.
GGCGCTGCAATCGGAACGCAATATTAAAGAGCAGATTGCCGTCCTGAAGGGCAGCCTGCTGTTGTCTCGTATCCTTTACCAGCAACAACAAACGCTGCCCTCGGCGGATGAACTGGAAAACATG > minE/315976‑316099 | ggAACGCAATATTAAAGAGCAGATTGCCGTCCTGAAGGGCAGCCTGCTGTTGTCTCg > 1:834285/1‑57 (MQ=255) ggAACGCAATATTAAAGAGCAGATTGCCGTCCTGAAGGGCAGCCTGCTGTTGTCTCGTATCCTTTAcc > 1:1310432/1‑68 (MQ=255) ggAACGCAATATTAAAGAGCAGATTGCCGTCCTGAAGGGCAGCCTGCTGTTGTCTCGTATCCTTTAc > 1:76699/1‑67 (MQ=255) atTAAAGAGCAGATTGCCGTCCTGAAGGGCAGCGTGCTGTTGTCTCGTATCCTTTACCAGcaacaacaa > 1:1369128/1‑69 (MQ=255) atTAAAGAGCAGATTGCCGTCCTGAAGGGCAGCCTGCTGTTGTCTCGTATCCTTTACCAGcaacaacaa > 1:3121673/1‑69 (MQ=255) atTAAAGAGCAGATTGCCGTCCTGAAGGGCAGCCTGCTGTTGTCTCGTATCCTTTACCAGcaacaacaa > 1:961571/1‑69 (MQ=255) atTAAAGAGCAGATTGCCGTCCTGAAGGGCAGCCTGCTGTTGTCTCGTATCCTTTACCAGcaacaacaa > 1:1929554/1‑69 (MQ=255) atTAAAGAGCAGATTGCCGTCCTGAAGGGCAGCCTGCTGTTGTCTCGTATCCTTTACCAGcaacaacaa > 1:1524687/1‑69 (MQ=255) atTAAAGAGCAGATTGCCGTCCTGAAGGGCAGCCCGCTGTTGTCTCGTATCCTTTACCAGcaacaacaa > 1:877283/1‑69 (MQ=255) ttAAAGAGCAGATTGCCGTCCTGAAGGGCAGCCTGCTGTTGTCTCGTATCCTTTACCAGcaacaacaa > 1:768853/1‑68 (MQ=255) ttAAAGAGCAGATTGCCGTCCTGAAGGGCAGCCTGCTGTTGTCTCGTATCCTTTACCAGCAACAACaaa > 1:2427784/1‑69 (MQ=255) ttAAAGAGCAGATTGCCGTCCTGAAGGGCAGCCTGCTGTTGTCTCGTATCCTTTACCAGCAACAACaaa > 1:1621204/1‑69 (MQ=255) ttAAAGAGCAGATTGCCGTCCTGAAGGGCAGCCTGCTGTTGTCTCGTATCCTTTACCAGCAACAACaaa > 1:421133/1‑69 (MQ=255) ttAAAGAGCAGATTGCCGTCCTGAAGGGCAGCCTGCTGTTGTCTCGTATCCTTTACCAGCAACAACaaa > 1:1985398/1‑69 (MQ=255) ttAAAGAGCAGATTGCCGTCCTGAAGGGCAGCCTGCTGTTGTCTCGTATCCTTTACCAGCAACAACaaa > 1:2157236/1‑69 (MQ=255) ttAAAGAGCAGATTGCCGTCCTGAAGGGCAGCCTGCTGTTGTCTCGTATCCTTTACCAGCAACAACaaa > 1:2209371/1‑69 (MQ=255) ttAAAGAGCAGATTGCCGTCCTGAAGGGCAGCCTGCTGTTGTCTCGTATCCTTTACCAGCAACAACaaa > 1:228125/1‑69 (MQ=255) ttAAAGAGCAGATTGCCGTCCTGAAGGGCAGCCTGCTGTTGTCTCGTATCCTTTACCAGCAACAACaaa > 1:2365534/1‑69 (MQ=255) ttAAAGAGCAGATTGCCGTCCTGAAGGGCAGCCTGCTGTTGTCTCGTATCCTTTACCAGCAACAACaaa > 1:1032008/1‑69 (MQ=255) ttAAAGAGCAGATTGCCGTCCTGAAGGGCAGCCTGCTGTTGTCTCGTATCCTTTACCAGCAACAACaaa > 1:2604993/1‑69 (MQ=255) ttAAAGAGCAGATTGCCGTCCTGAAGGGCAGCCTGCTGTTGTCTCGTATCCTTTACCAGCAACAACaaa > 1:2650860/1‑69 (MQ=255) ttAAAGAGCAGATTGCCGTCCTGAAGGGCAGCCTGCTGTTGTCTCGTATCCTTTACCAGCAACAACaaa > 1:2687803/1‑69 (MQ=255) ttAAAGAGCAGATTGCCGTCCTGAAGGGCAGCCTGCTGTTGTCTCGTATCCTTTACCAGCAACAACaaa > 1:3164471/1‑69 (MQ=255) ttAAAGAGCAGATTGCCGTCCTGAAGGGCAGCCTGCTGTTGTCTCGTATCCTTTACCAGCAACAACaaa > 1:2951849/1‑69 (MQ=255) ttAAAGAGCAGATTGCCGTCCTGAAGGGCAGCCTGCTGTTGTCTCGTATCCTTTACCAGCAACAACaaa > 1:1032268/1‑69 (MQ=255) ttAAAGAGCAGATTGCCGTCCTGAAGGGCAGCCTGCTGTTGTCTCGTATCCTTTACCAGCAACAACaaa > 1:1594545/1‑69 (MQ=255) ttAAAGAGCAGATTGCCGTCCTGAAGGGCAGCCTGCTGTTGTCTCGTATCCTTTACCAGCAACAACaaa > 1:156441/1‑69 (MQ=255) ttAAAGAGCAGATTGCCGTCCTGAAGGGCAGCCTGCTGTTGTCTCGTATCCTTTACCAGCAACAACaaa > 1:1546029/1‑69 (MQ=255) aaaGAGCAGATTGCCGTCCTGAAGGGCAGCCTGCTGTTGTCTCg > 1:2359585/1‑44 (MQ=255) aaaGAGCAGATTGCCGTCCTGAAGGGCAGCCTGCTGTTGTCTCGTATCCTTTACCAGCAACAACAAAc > 1:3246014/1‑68 (MQ=255) aaaGAGCAGATTGCCGTCCTGAAGGGCAGCCTGCTGTTGTCTCGTATCCTTTACCAGCAACAACAAACg > 1:3088300/1‑69 (MQ=255) aaaGAGCAGATTGCCGTCCTGAAGGGCAGCCTGCTGTTGTCTCGTATCCTTTACCAGCAACAACAAACg > 1:349776/1‑69 (MQ=255) aaaGAGCAGATTGCCGTCCTGAAGGGCAGCCTGCTGTTGTCTCGTATCCTTTACCAGCAACAACAAACg > 1:1440022/1‑69 (MQ=255) aaaGAGCAGATTGCCGTCCTGAAGGGCAGCCTGCTGTTGTCTCGTATCCTTTACCAGCAACAACAAACg > 1:1268574/1‑69 (MQ=255) aaaGAGCAGATTGCCGTCCTGAAGGGCAGCCTGCTGTTGTCTCGTATCCTTTACCAGCAACAACAAACg > 1:2996390/1‑69 (MQ=255) aaaGAGCAGATTGCCGTCCTGAAGGGCAGCCTGCTGTTGTCTCGTATCCTTTACCAGCAACAACAAACg > 1:193941/1‑69 (MQ=255) aaaGAGCAGATTGCCGTCCTGAAGGGCAGCCTGCTGTTGTCTCGTATCCTTTACCAGCAACAACAAACg > 1:1726888/1‑69 (MQ=255) aaaGAGCAGATTGCCGTCCTGAAGGGCAGCCTGCTGTTGTCTCGTATCCTTTACCAGCAACAACAAACg > 1:1607598/1‑69 (MQ=255) ggagCAGATTGCCGTTCTGAAGGGCAGTCTGCTGTTGTCACGTATCCTGTACCAGCAACAACAAAcac < 1:2646247/67‑3 (MQ=255) ggagCAGATTGCCGTTCTGAAGGGCAGTCTGCTGTTGTCACGTATCCTGTACCAGCAACAACAAAcac < 1:1183341/67‑3 (MQ=255) ggagCAGATTGCCGTTCTGAAGGGCAGTCTGCTGTTGTCACGTATCCTGTACCAGCAACAACAAAcac < 1:2542005/67‑3 (MQ=255) ggagCAGATTGCCGTTCTGAAGGGCAGTCTGCTGTTGTCACGTATCCTGTACCAGCAACAACAAAcac < 1:1145748/67‑3 (MQ=255) ggagCAGATTGCCGTTCTGAAGGGCAGTCTGCTGTTGTCACGTATCCTGTACCAGCAACAACAAAcac < 1:1085865/67‑3 (MQ=255) ggagCAGATTGCCGTTCTGAAGGGCAGTCTGCTGTTGTCACGTATCCTGTACCAGCAACAACAAAcac < 1:2708759/67‑3 (MQ=255) ggagCAGATTGCCGTTCTGAAGGGCAGTCTGCTGTTGTCACGTATCCTGTACCAGCAACAACAAAcac < 1:3150912/67‑3 (MQ=255) ggagCAGATTGCCGTTCTGAAGGGCAGTCTGCTGTTGTCACGTATCCTGTACCAGCAACAACAAAcac < 1:339824/67‑3 (MQ=255) ggagCAGATTGCCGTTCTGAAGGGCAGTCTGCTGTTGTCACGTATCCTGTACCAGCAACAACAAAcac < 1:2994846/67‑3 (MQ=255) ggagCAGATTGCCGTTCTGAAGGGCAGTCTGCTGTTGTCACGTATCCTGTACCAGCAACAACAAAcac < 1:365077/67‑3 (MQ=255) ggagCAGATTGCCGTTCTGAAGGGCAGTCTGCTGTTGTCACGTATCCTGTACCAGCAACAACAAAcac < 1:1474330/67‑3 (MQ=255) ggagCAGATTGCCGTTCTGAAGGGCAGTCTGCTGTTGTCACGTATCCTGTACCAGCAACAACAAAcac < 1:211595/67‑3 (MQ=255) ggagCAGATTGCCGTTCTGAAGGGCAGTCTGCTGTTGTCACGTATCCTGTACCAGCAACAACAAAcac < 1:418723/67‑3 (MQ=255) ggagCAGATTGCCGTTCTGAAGGGCAGTCTGCTGTTGTCACGTATCCTGTACCAGCAACAACAAAcac < 1:1888165/67‑3 (MQ=255) gagCAGATTGCCGTTCTGAAGGGCAGTCTGCTGTTGTCACGTATCCTGTACCAGCAACAACAAAcac < 1:748295/67‑3 (MQ=255) gagCAGATTGCCGTTCTGAAGGGCAGTCTGCTGTTGTCACGTATCCTGTACCAGCAACAACAAAcac < 1:2786511/67‑3 (MQ=255) gagCAGATTGCCGTTCTGAAGGGCAGTCTGCTGTTGTCACGTATCCTGTACCAGCAACAACAAAcac < 1:1083779/67‑3 (MQ=255) gagCAGATTGCCGTTCTGAAGGGCAGTCTGCTGTTGTCACGTATCCTGTACCAGCAACAACAAAcac < 1:461258/67‑3 (MQ=255) gagCAGATTGCCGTTCTGAAGGGCAGTCTGCTGTTGTCACGTATCCTGTACCAGCAACAACAAAcac < 1:3285046/67‑3 (MQ=255) gagCAGATTGCCGTTCTGAAGGGCAGTCCGCTGTTGTCACGTATCCTGTACCAGCAACAACAAAcac < 1:2309280/67‑3 (MQ=255) tCCTGAAGGGCAGCCTGCTGTTGTCTCGTATCCTTTACCAGCAACAACAAACGCTGCCCTCGGCGGATg < 1:1813787/69‑1 (MQ=255) tCCTGAAGGGCAGCCTGCTGTTGTCTCGTATCCTTTACCAGCAACAACAAACGCTGCCCTCGGCGGATg < 1:3090097/69‑1 (MQ=255) tCCTGAAGGGCAGCCTGCTGTTGTCTCGTATCCTTTACCAGCAACAACAAACGCTGCCCTCGGCGGATg < 1:3235003/69‑1 (MQ=255) gCAGCCTGCTGTTGTCTCGTATCCTTTACCAGCAACAACAAACGCTGCCCTCGGCGGATGAACTGGaa > 1:1596826/1‑68 (MQ=255) gCAGCCTGCTGTTGTCTCGTATCCTTTACCAGCAACAACAAACGCTGCCCTCGGCGGATGAACTGGaa > 1:2336515/1‑68 (MQ=255) cAGCCTGCTGTTGTCTCGTATCCTTTACCAGCAACAACAGACGCTGCCCTCGGCGGATGAACTGGaaaa > 1:3195869/1‑69 (MQ=255) cAGCCTGCTGTTGTCTCGTATCCTTTACCAGCAACAACAAACGCTGCCCTCGGCGGATGAACTGGaaaa < 1:272972/69‑1 (MQ=255) cAGCCTGCTGTTGTCTCGTATCCTTTACCAGCAACAACAAACGCTGCCCTCGGCGGATGAACTGGaaaa < 1:305868/69‑1 (MQ=255) ctgctgTTGTCTCGTATCCTTTACCAGCAACAACAAACGCTGCCCTCGGCGGATGAACTGGAAAACATg < 1:975545/69‑1 (MQ=255) ctgctgTTGTCTCGTATCCTTTACCAGCAACAACAAACGCTGCCCTCGGCGGATGAACTGGAAAACATg < 1:560466/69‑1 (MQ=255) ctgctgTTGTCTCGTATCCTTTACCAGCAACAACAAACGCTGCCCTCGGCGGATGAACTGGAAAACATg < 1:367116/69‑1 (MQ=255) ctgctgTTGTCTCGTATCCTTTACCAGCAACAACAAACGCTGCCCTCGGCGGATGAACTGGAAAACATg < 1:1163584/69‑1 (MQ=255) ctgctgTTGTCTCGTATCCTTTACCAGCAACAACAAACGCTGCCCTCGGCGGATGAACTGGAAAACATg < 1:2879662/69‑1 (MQ=255) ctgctgTTGTCTCGTATCCTTTACCAGCAACAACAAACGCTGCCCTCGGCGGATGAACTGGAAAACATg < 1:1388203/69‑1 (MQ=255) ctgctgTTGTCTCGTATCCTTTACCAGCAACAACAAACGCTGCCCTCGGCGGATGAACTGGAAAACATg < 1:1459865/69‑1 (MQ=255) ctgctgTTGTCTCGTATCCTTTACCAGCAACAACAAACGCTGCCCTCGGCGGATGAACTGGAAAACATg < 1:1931101/69‑1 (MQ=255) ctgctgTTGTCTCGTATCCTTTACCAGCAACAACAAACGCTGCCCTCGGCGGATGAACTGGAAAACATg < 1:193410/69‑1 (MQ=255) ctgctgTTGTCTCGTATCCTTTACCAGCAACAACAAACGCTGCCCTCGGCGGATGAACTGGAAAACATg < 1:2189493/69‑1 (MQ=255) ctgTTGTCACGTATCCTGTACCAGGAACAACAAACACTCCCCTCGGCAGATGAACTGGaa > 1:498141/1‑60 (MQ=255) ctgTTGTCACGTATCCTGTACCAGCAACAACAAACACTCCCCTCGGCAGATTAACTGGaa > 1:110501/1‑60 (MQ=255) ctgTTGTCACGTATCCTGTACCAGCAACAACAAACACTCCCCTCGGCAGATGAACTTGaa > 1:10087/1‑60 (MQ=255) ctgTTGTCACGTATCCTGTACCAGCAACAACAAACACTCCCCTCGGCAGATGAACTGGaa > 1:3396181/1‑60 (MQ=255) ctgTTGTCACGTATCCTGTACCAGCAACAACAAACACTCCCCTCGGCAGATGAACTGGaa > 1:3029657/1‑60 (MQ=255) ctgTTGTCACGTATCCTGTACCAGCAACAACAAACACTCCCCTCGGCAGATGAACTGGaa > 1:1040817/1‑60 (MQ=255) ctgTTGTCACGTATCCTGTACCAGCAACAACAAACACTCCCCTCGGCAGATGAACTGGaa > 1:931767/1‑60 (MQ=255) ctgTTGTCACGTATCCTGTACCAGCAACAACAAACACTCCCCTCGGCAGATGAACTGGaa > 1:2974368/1‑60 (MQ=255) ctgTTGTCACGTATCCTGTACCAGCAACAACAAACACTCCCCTCGGCAGATGAACTGGaa > 1:2893353/1‑60 (MQ=255) ctgTTGTCACGTATCCTGTACCAGCAACAACAAACACTCCCCTCGGCAGATGAACTGGaa > 1:809880/1‑60 (MQ=255) ctgTTGTCACGTATCCTGTACCAGCAACAACAAACACTCCCCTCGGCAGATGAACTGGaa > 1:1215895/1‑60 (MQ=255) ctgTTGTCACGTATCCTGTACCAGCAACAACAAACACTCCCCTCGGCAGATGAACTGGaa > 1:1226882/1‑60 (MQ=255) ctgTTGTCACGTATCCTGTACCAGCAACAACAAACACTCCCCTCGGCAGATGAACTGGaa > 1:2812717/1‑60 (MQ=255) ctgTTGTCACGTATCCTGTACCAGCAACAACAAACACTCCCCTCGGCAGATGAACTGGaa > 1:2746342/1‑60 (MQ=255) ctgTTGTCACGTATCCTGTACCAGCAACAACAAACACTCCCCTCGGCAGATGAACTGGaa > 1:1656394/1‑60 (MQ=255) ctgTTGTCACGTATCCTGTACCAGCAACAACAAACACTCCCCTCGGCAGATGAACTGGaa > 1:247195/1‑60 (MQ=255) ctgTTGTCACGTATCCTGTACCAGCAACAACAAACACTCCCCTCGGCAGATGAACTGGaa > 1:2061044/1‑60 (MQ=255) ctgTTGTCACGTATCCTGTACCAGCAACAACAAACACTCCCCTCGGCAGATGAACTGGaa > 1:2335357/1‑60 (MQ=255) ctgTTGTCACGTATCCTGTACCAGCAACAACAAACACTCCCCTCGGCAGATGAACTGGaa > 1:3412188/1‑60 (MQ=255) ctgTTGTCACGTATCCTGTACCAGCAACAACAAACACTCCCCTCGGCAGATGAACTGGaa > 1:2391205/1‑60 (MQ=255) ctgTTGTCACGTATCCTGTACCAGCAACAACAAACACTCCCCTCGGCAGATGAACTGGa > 1:2710240/1‑59 (MQ=255) ctgTTGTCACGTATCCTGTACCAGCAACAACAAACACTCCCCTCGGCAGATGAACTGGa > 1:2421099/1‑59 (MQ=255) ctgTTGTCACGTATCCTGTACCAGCAACAACAAACACTCACCTCGGCAGATGAACTGGaa > 1:3238085/1‑60 (MQ=255) ctgTTGTCACGTATCCTGTACCAGCAACAACAAACACTCACCTCGGCAGATGAACTGGaa > 1:23363/1‑60 (MQ=255) | GGCGCTGCAATCGGAACGCAATATTAAAGAGCAGATTGCCGTCCTGAAGGGCAGCCTGCTGTTGTCTCGTATCCTTTACCAGCAACAACAAACGCTGCCCTCGGCGGATGAACTGGAAAACATG > minE/315976‑316099 |
Alignment Legend |
---|
Aligned base mismatch/match (shaded by quality score): ATCG/ATCG < 3 ≤ ATCG/ATCG < 14 ≤ ATCG/ATCG < 32 ≤ ATCG/ATCG < 36 ≤ ATCG/ATCG |
Unaligned base: atcg Masked matching base: atcg Alignment gap: ‑ Deleted base: ‑ |