| Predicted mutation | |||||||
|---|---|---|---|---|---|---|---|
| evidence | seq id | position | mutation | freq | annotation | gene | description |
| RA | minE | 345,177 | A→C | 29.0% | R42R (CGA→CGC) | ybbM → | predicted inner membrane protein |
| Read alignment evidence... | |||||||||||
|---|---|---|---|---|---|---|---|---|---|---|---|
| seq id | position | ref | new | freq | score (cons/poly) | reads | annotation | genes | product | ||
| * | minE | 345,177 | 0 | A | C | 29.0% | 66.5 / 34.9 | 62 | R42R (CGA→CGC) | ybbM | predicted inner membrane protein |
| Reads supporting (aligned to +/- strand): ref base A (16/28); new base C (14/4); total (30/32) | |||||||||||
| Fisher's exact test for biased strand distribution p-value = 4.68e-03 | |||||||||||
| Kolmogorov-Smirnov test that lower quality scores support variant p-value = 1.00e+00 | |||||||||||
GTGGCAATCTTAATTAGCCATAAAGAAAAACTGGCGCTGGAGAAAGATATTCTCTGGAGCGTCGGGCGAGCGATAATTCAGCTGATTATTGTCGGCTATGTGCTGAAGTATATTTTCAGCGTGGATGATGC > minE/345109‑345239 | gtggCAATCTTAATTAGCCATAAAGAAAAACTGGCGCTGGAGAAAGATATTCTCTGGAGCGTCGGgcga > 1:3199732/1‑69 (MQ=255)gtggCAATCTTAATTAGCCATAAAGAAAAACTGGCGCTGGAGAAAGATATTCTCTGGAGCGTCGGgcga > 1:1233654/1‑69 (MQ=255)gtggCAATCTTAATTAGCCATAAAGAAAAACTGGCGCTGGAGAAAGATATTCTCTGGAGCGTCGGgcga > 1:1397451/1‑69 (MQ=255)gtggCAATCTTAATTAGCCATAAAGAAAAACTGGCGCTGGAGAAAGATATTCTCTGGAGCGTCGGgcga > 1:227454/1‑69 (MQ=255) cTTAATTAGCCATAAAGAAAAACTGGCGCTGGAGAAAGATATTCTCTGGAGCGTCGGGCGAGCGATaa > 1:1259820/1‑68 (MQ=255) cTTAATTAGCCATAAAGAAAAACTGGCGCTGGAGAAAGATATTCTCTGGAGCGTCGGGCGAGCGATaa > 1:3029015/1‑68 (MQ=255) aGCCATAAAGAAAAACTGGCGCTGGAGAAAGATATTCTCTGGAGCGTCGGgcgcgcga < 1:2642311/58‑1 (MQ=255) aGCCATAAAGAAAAACTGGCGCTGGAGAAAGATATTCTCTGGAGCGTCGGgcgcgcga < 1:192948/58‑1 (MQ=255) aGCCATAAAGAAAAACTGGCGCTGGAGAAAGATATTCTCTGGAGCGTCGGgcgcgcga < 1:3111463/58‑1 (MQ=255) aGCCATAAAGAAAAACTGGCGCTGGAGAAAGATATTCTCTGGAGCGTCGGgcgcgcga < 1:2839593/58‑1 (MQ=255) aGCCATAAAGAAAAACTGGCGCTGGAGAAAGATATTCTCTGGAGCGTCGGgcgcgcga < 1:913049/58‑1 (MQ=255) gCCATAAAGAAAAACTGGCGCTGGAGAAAGATATTCTCTGGAGCGTCGGgcgcgcga < 1:1589435/57‑1 (MQ=255) tAAAGAAAAACTGGCGCTGGAGAAAGATATTCTCTGGAGCGTCGGGCGAGCGATAATTCAGCTGatta < 1:1676503/68‑1 (MQ=255) aaaGAAAAACTGGCGCTGGAGAAAGATATTCTCTGGAGCGTCGGGCGCGCGATAAt > 1:2395115/1‑56 (MQ=255) aaaGAAAAACTGGCGCTGGAGAAAGATATTCTCTGGAGCGTCGGGCGCGCGATAATTCAGCTg > 1:2773748/1‑63 (MQ=255) aaaGAAAAACTGGCGCTGGAGAAAGATATTCTCTGGAGCGTCGGGCGCGCGATAATTCAGCTg > 1:2690743/1‑63 (MQ=255) aaaGAAAAACTGGCGCTGGAGAAAGATATTCTCTGGAGCGTCGGGCGCGCGATAATTCAGCTg > 1:2162211/1‑63 (MQ=255) aaaGAAAAACTGGCGCTGGAGAAAGATATTCTCTGGAGCGTCGGGCGCGCGATAATTCAGCTg > 1:3131808/1‑63 (MQ=255) aaaGAAAAACTGGCGCTGGAGAAAGATATTCTCTGGAGCGTCGGGCGCGCGATAATTCAGCTg > 1:2048275/1‑63 (MQ=255) aaaGAAAAACTGGCGCTGGAGAAAGATATTCTCTGGAGCGTCGGGCGCGCGATAATTCAGCTg > 1:2646047/1‑63 (MQ=255) aaaGAAAAACTGGCGCTGGAGAAAGATATTCTCTGGAGCGTCGGGCGCGCGATAATTCAGCTg > 1:1127697/1‑63 (MQ=255) aaaGAAAAACTGGCGCTGGAGAAAGATATTCTCTGGAGCGTCGGGCGCGCGATAATTCAGCTg > 1:1817759/1‑63 (MQ=255) aaaGAAAAACTGGCGCTGGAGAAAGATATTCTCTGGAGCGTCGGGCGCGCGATAATTCAGCTg > 1:1305194/1‑63 (MQ=255) aaaGAAAAACTGGCGCTGGAGAAAGATATTCTCTGGAGCGTCGGGCGCGCGATAATTCAGCTg > 1:1422739/1‑63 (MQ=255) aaaGAAAAACTGGCGCTGGAGAAAGATATTCTCTGGAGCGTCGGGCGCGCGATAATTCAGCTg > 1:1671402/1‑63 (MQ=255) aaaGAAAAACTGGCGCTGGAGAAAGATATTCTCTGGAGCGTCGGGCGCGCGATAATTCAGCTg > 1:583974/1‑63 (MQ=255) aaaGAAAAACTGGCGCTGGAGAAAGATATTCTCTGGAGCGTCGGGCGCGCGATAATTCAGCTg > 1:1740550/1‑63 (MQ=255) aaaGAAAAACTGGCGCTGGAGAAAGATATTCTCTGGAGCGTCGGGCGAGCGATAATTCAGCTGattatt < 1:342743/69‑1 (MQ=255) aaaGAAAAACTGGCGCTGGAGAAAGATATTCTCTGGAGCGTCGGGCGAGCGATAATTCAGCTGattatt < 1:2663496/69‑1 (MQ=255) aaaGAAAAACTGGCGCTGGAGAAAGATATTCTCTGGAGCGTCGGGCGAGCGATAATTCAGCTGattatt < 1:1784551/69‑1 (MQ=255) aaGAAAAACTGGCGCTGGAGAAAGATATTCTCTGGAGCGTCGGGCGAGCGATAATTCAGCTg > 1:785398/1‑62 (MQ=255) aaGAAAAACTGGCGCTGGAGAAAGATATTCTCTGGAGCGTCGGGCGAGCGATAATTCAGCTGATTATTg > 1:1810376/1‑69 (MQ=255) aaGAAAAACTGGCGCTGGAGAAAGATATTCTCTGGAGCGTCGGGCGAGCGATAATTCAGCTGATTATTg > 1:1620738/1‑69 (MQ=255) aaGAAAAACTGGCGCTGGAGAAAGATATTCTCTGGAGCGTCGGGCGAGCGATAATTCAGCTGATTATTg > 1:2034848/1‑69 (MQ=255) aaGAAAAACTGGCGCTGGAGAAAGATATTCTCTGGAGCGTCGGGCGAGCGATAATTCAGCTGATTATTg > 1:2506527/1‑69 (MQ=255) aaGAAAAACTGGCGCTGGAGAAAGATATTCTCTGGAGCGTCGGGCGAGCGATAATTCAGCTGATTATTg > 1:550937/1‑69 (MQ=255) aaGAAAAACTGGCGCTGGAGAAAGATATTCTCTGGAGCGTCGGGCGAGCGATAATTCAGCTGATTATTg > 1:1153218/1‑69 (MQ=255) gAAAAACTGGCGCTGGAGAAAGATATTCTCTGGAGCGTCGGGCGAGCGATAATTCAGCTGATTATTGt > 1:1725434/1‑68 (MQ=255) aaaCTGGCGCTGGAGAAAGATATTCTCTGGAGCGTCGGGCGAGCGATAATTCAGCTGATTATTGTCGGc > 1:3110738/1‑69 (MQ=255) aaaCTGGCGCTGGAGAAAGATATTCTCTGGAGCGTCGGGCGAGCGATAATTCAGCTGATTATTGTCGGc > 1:2709410/1‑69 (MQ=255) aaaCTGGCGCTGGAGAAAGATATTCTCTGGAGCGTCGGGCGAGCGATAATTCAGCTGATTATTGTCGGc > 1:50862/1‑69 (MQ=255) aaaCTGGCGCTGGAGAAAGATATTCTCTGGAGCGTCGGGCGAGCGATAATTCAGCTGATTATTGTCGGc > 1:1132149/1‑69 (MQ=255) aaaCTGGCGCTGGAGAAAGATATTCTCTGGAGCGTCGGGCGAGCGATAATTCAGCTGATTATTGTCGGc > 1:2048794/1‑69 (MQ=255) aCTGGCGCTGGAGAAAGATATTCTCTGGAGCGTCGGGCGAGCGATAATTCAGCTGATTATTGTCGGCTa < 1:3294497/69‑1 (MQ=255) aCTGGCGCTGGAGAAAGATATTCTCTGGAGCGTCGGGCGAGCGATAATTCAGCTGATTATTGTCGGCTa < 1:2573019/69‑1 (MQ=255) aCTGGCGCTGGAGAAAGATATTCTCTGGAGCGTCGGGCGAGCGATAATTCAGCTGATTATTGTCGGCTa < 1:2514265/69‑1 (MQ=255) aCTGGCGCTGGAGAAAGATATTCTCTGGAGCGTCGGGCGAGCGATAATTCAGCTGATTATTGTCGGCTa < 1:2499037/69‑1 (MQ=255) aCTGGCGCTGGAGAAAGATATTCTCTGGAGCGTCGGGCGAGCGATAATTCAGCTGATTATTGTCGGCTa < 1:236626/69‑1 (MQ=255) aCTGGCGCTGGAGAAAGATATTCTCTGGAGCGTCGGGCGAGCGATAATTCAGCTGATTATTGTCGGCTa < 1:2258760/69‑1 (MQ=255) aCTGGCGCTGGAGAAAGATATTCTCTGGAGCGTAGGGCGAGCGATAATTCAGCTGATTATTGTCGGCTa < 1:1842782/69‑1 (MQ=255) cgcTGGAGAAAGATATTCTCTGGAGCGTCGGGCGAGCGATAATTCAGCTGattatt < 1:1686177/56‑1 (MQ=255) gaAAGATATTCTCTGGAGCGTCGGGCGAGCTATAATTCAGCTGATTATTGTCGGCTATGTGCTGAAGta < 1:717685/69‑1 (MQ=255) gaAAGATATTCTCTGGAGCGTCGGGCGAGCGATAATTCAGCTGATTATTGTCGGCTATGTGCTGAAGta < 1:3387094/69‑1 (MQ=255) gaAAGATATTCTCTGGAGCGTCGGGCGAGCGATAATTCAGCTGATTATTGTCGGCTATGTGCTGAAGta < 1:684924/69‑1 (MQ=255) gaAAGATATTCTCTGGAGCGTCGGGCGAGCGATAATTCAGCTGATTATTGTCGGCTATGTGCTGAAGta < 1:2665270/69‑1 (MQ=255) gaAAGATATTCTCTGGAGCGTCGGGCGAGCGATAATTCAGCTGATTATTGTCGGCTATGTGCTGAAGta < 1:2601797/69‑1 (MQ=255) gaAAGATATTCTCTGGAGCGTCGGGCGAGCGATAATTCAGCTGATTATTGTCGGCTATGTGCTGAAGta < 1:2629164/69‑1 (MQ=255) gCGTCGGGCGCGCGATAATTCAGCTGATTATTGTCGGCTATGTGCTGAAGTATATTTTCAGCGTg < 1:672570/65‑1 (MQ=255) gCGTCGGGCGCGCGATAATTCAGCTGATTATTGTCGGCTATGTGCTGAAGTATATTTTCAGCGTg < 1:505411/65‑1 (MQ=255) gCGTCGGGCGCGCGATAATTCAGCTGATTATTGTCGGCTATGTGCTGAAGTATATTTTCAGCGTg < 1:26187/65‑1 (MQ=255) gCGTCGGGCGCGCGATAATTCAGCTGATTATTGTCGGCTATGTGCTGAAGTATATTTTCAGCGTg < 1:2210283/65‑1 (MQ=255) gCGTCGGGCGAGCGATAATTCAGCTGATTATTGTCGGCTATGTGCTGAAGTATATTTTCAGCGTGgat < 1:332375/68‑1 (MQ=255) gCGTCGGGCGAGCGATAATTCAGCTGATTATTGTCGGCTATGTGCTGAAGTATATTTTCAGCGTGgat < 1:2026651/68‑1 (MQ=255) gCGTCGGGCGAGCGATAATTCAGCTGATTATTGTCGGCTATGTGCTGAAGTATATTTTCAGCGTGgat < 1:1810652/68‑1 (MQ=255) gCGTCGGGCGAGCGATAATTCAGCTGATTATTGTCGGCTATGTGCTGAAGTATATTTTCAGCGTGgat < 1:564370/68‑1 (MQ=255) gCGTCGGGCGAGCGATAATTCAGCTGATTATTGTCGGCTATGTGCTGAAGTATATTTTCAGCGTGgat < 1:2114355/68‑1 (MQ=255) gCGTCGGGCGAGCGATAATTCAGCTGATTATTGTCGGCTATGTGCTGAAGTATATTTTCAGCGTGgat < 1:3004079/68‑1 (MQ=255) gCGTCGGGCGAGCGATAATTCAGCTGATTATTGTCGGCTATGTGCTGAAGTATATTTTCAGCGTGgat < 1:1378373/68‑1 (MQ=255) gCGTCGGGCGAGCGATAATTCAGCTGATTATTGTCGGCTATGTGCTGAAGTATATTTTCAGCGTGgat < 1:898062/68‑1 (MQ=255) gCGTCGGGCGAGCGATAATTCAGCTGATTATTGTCGGCTATGTGCTGAAGTATATTTTCAGCGTGgat < 1:1296231/68‑1 (MQ=255) cggcGGGCGAGCGATAATTCAGCTGATTATTGTCGGCTATGTGCTGAAGTATATTTTCAGCGTGgat < 1:2227849/64‑1 (MQ=255) gggCGAGCGATAATTCAGCTGATTATTGTCGGCTATGTGCTGAAGTATATTTTCAGCGTGGATGATGc > 1:1825518/1‑68 (MQ=255) | GTGGCAATCTTAATTAGCCATAAAGAAAAACTGGCGCTGGAGAAAGATATTCTCTGGAGCGTCGGGCGAGCGATAATTCAGCTGATTATTGTCGGCTATGTGCTGAAGTATATTTTCAGCGTGGATGATGC > minE/345109‑345239 |
| Alignment Legend |
|---|
Aligned base mismatch/match (shaded by quality score): ATCG/ATCG < 3 ≤ ATCG/ATCG < 21 ≤ ATCG/ATCG < 32 ≤ ATCG/ATCG < 36 ≤ ATCG/ATCG |
Unaligned base: atcg Masked matching base: atcg Alignment gap: ‑ Deleted base: ‑ |