| Predicted mutation | |||||||
|---|---|---|---|---|---|---|---|
| evidence | seq id | position | mutation | freq | annotation | gene | description |
| RA | minE | 412,911 | T→C | 61.5% | Q424Q (CAA→CAG) | lnt ← | apolipoprotein N‑acyltransferase |
| Read alignment evidence... | |||||||||||
|---|---|---|---|---|---|---|---|---|---|---|---|
| seq id | position | ref | new | freq | score (cons/poly) | reads | annotation | genes | product | ||
| * | minE | 412,911 | 0 | T | C | 61.5% | 38.2 / 42.3 | 70 | Q424Q (CAA→CAG) | lnt | apolipoprotein N‑acyltransferase |
| Reads supporting (aligned to +/- strand): ref base T (10/17); new base C (8/35); total (18/52) | |||||||||||
| Fisher's exact test for biased strand distribution p-value = 1.00e-01 | |||||||||||
| Kolmogorov-Smirnov test that lower quality scores support variant p-value = 9.82e-01 | |||||||||||
Only 100 of 104 total aligned reads displayed.
CCGTTGTTGGTGCTGCGCAACAGTGGGCGCGCCAGCTCCAGCGCACGCATTCGCGCCATCTGGAAGTGTTGCCATGGACCAATAGATTTACCAAACCACGCATCGTTGGAGATAGTCAGCAGATAGTCGGTATCCGG > minE/412843‑412979 | ccGTTGTTGGTGCTGCGCAACAGTGGGCGCGCCAGCTCCAGCGCACGCATTCGCGCCATCTGGAAgtgt > 1:1213030/1‑69 (MQ=255)ccGTTGTTGGTGCTGCGCAACAGTGGGCGCGCCAGCTCCAGCGCACGCATTCGCGCCATCTGGAAgtgt > 1:1560750/1‑69 (MQ=255)ccGTTGTTGGTGCTGCGCAACAGTGGGCGCGCCAGCTCCAGCGCACGCATTCGCGCCATCTGGAAgtgt > 1:1859251/1‑69 (MQ=255)ccGTTGTTGGTGCTGCGCAACAGTGGGCGCGCCAGCTCCAGCGCACGCATTCGCGCCATCTGGAAgtgt > 1:568601/1‑69 (MQ=255)ccGTTGTTGGTGCTGCGCAACAGTGGGCGCGCCAGCTCCAGCGCACGCATTCGCGCCATCTGGAAgtgt > 1:623037/1‑69 (MQ=255)ccGTTGTTGGTGCTGCGCAACAGTGGGCGCGCCAGCTCCAGCGCACGCATTCGCGCCATCTGGAAgtgt > 1:654117/1‑69 (MQ=255)ccGTTGTTGGTGCTGCGCAACAGTGGGCGCGCCAGCTCCAGCGCACGCATTCGCGCCATCTGGAAgtgt > 1:2933919/1‑69 (MQ=255)ccGTTGTTGGTGCTGCGCAACAGTGGGCGCGCCAGCTCCAGCGCACGCATTCGCGCCATCTGGAAgtgt > 1:907686/1‑69 (MQ=255)ccGTTGTTGGTGCTGCGCAACAGTGGGCGCGCCAGCTCCAGCGCACGCATTCGCGCCATCTGGAAgtgt > 1:270154/1‑69 (MQ=255)ccGTTGTTGGTGCTGCGCAACAGTGGGCGCGCCAGCTCAAGCGCACGCATTCGCGCCATCTGGAAgtgt > 1:1946686/1‑69 (MQ=255)cagttgttGGTGCTGCGCAACAGTGGGCGCGCCAGCTCCAGCGCACGCATTCGCGCCATCTGGAAgtgt > 1:2695746/3‑69 (MQ=255) gttgGTGCTGCGCAACAGTGGGCGCGCCAGCTCCAGCGCACGCATTCGCGCCATCTGGAAGTGTTGCCa > 1:1529112/1‑69 (MQ=255) tgGTGCTGCGCAACAGTGGGCGCGCCAGCTCCAGCGCACGCATTCGCGCCATCTGGAAGTGCTGCCAt < 1:468385/68‑1 (MQ=255) ggTGCTGCGCAACAGTGGGCGCGCCAGCTCCAGCGCACGCATTCGCGCCATCTGGAAGTGCTGCCATg < 1:2056416/68‑1 (MQ=255) ggTGCTGCGCAACAGTGGGCGCGCCAGCTCCAGCGCACGCATTCGCGCCATCTGGAAGTGCTGCCATg < 1:1988976/68‑1 (MQ=255) ggTGCTGCGCAACAGTGGGCGCGCCAGCTCCAGCGCACGCATTCGCGCCATCTGGAAGTGCTGCCATg < 1:1977970/68‑1 (MQ=255) ggTGCTGCGCAACAGTGGGCGCGCCAGCTCCAGCGCACGCATTCGCGCCATCTGGAAGTGCTGCCATg < 1:2546811/68‑1 (MQ=255) ggTGCTGCGCAACAGTGGGCGCGCCAGCTCCAGCGCACGCATTCGCGCCATCTGGAAGTGCTGCCATg < 1:2242975/68‑1 (MQ=255) ggTGCTGCGCAACAGTGGGCGCGCCAGCTCCAGCGCACGCATTCGCGCCATCTGGAAGTGCTGCCATg < 1:193335/68‑1 (MQ=255) ggTGCTGCGCAACAGTGGGCGCGCCAGCTCCAGCGCACGCATTCGCGCCATCTGGAAGTGCTGCCATg < 1:2698436/68‑1 (MQ=255) ggTGCTGCGCAACAGTGGGCGCGCCAGCTCCAGCGCACGCATTCGCGCCATCTGGAAGTGCTGCCATg < 1:508427/68‑1 (MQ=255) ggTGCTGCGCAACAGTGGGCGCGCCAGCTCCAGCGCACGCATTCGCGCCATCTGGAAGTGCTGCCATg < 1:906554/68‑1 (MQ=255) ggTGCTGCGCAACAGTGGGCGCGCCAGCTCCAGCGCACGCATTCGCGCCATCTGGAAGTGCTGCCATg < 1:1141707/68‑1 (MQ=255) ggTGCTGCGCAACAGTGGGCGCGCCAGCTCCAGCGCACGCATTCGCGCCATCTGGAAGTGCTGCCATg < 1:754586/68‑1 (MQ=255) ggTGCTGCGCAACAGTGGGCGCGCCAGCTCCAGCGCACGCATTCGCGCCATCTGGAAGTGCTGCCATg < 1:1446024/68‑1 (MQ=255) gcgcAACAGTGGGCGCGCCAGCTCCAGCGCACGCATTCGCGCCATCTGGAAGTGCTGCCATGGAcc > 1:280023/1‑66 (MQ=255) gcgcAACAGTGGGCGCGCCAGCTCCAGCGCACGCATTCGCGCCATCTGGAAGTGCTGCCATGGAcc > 1:873613/1‑66 (MQ=255) gcgcAACAGTGGGCGCGCCAGCTCCAGCGCACGCATTCGCGCCATCTGGAAGTGCTGCCATGGAcc > 1:2307213/1‑66 (MQ=255) gcgcAACAGTGGGCGCGCCAGCTCCAGCGCACGCATTCGCGCCATCTGGAAGTGCTGCCATGGAcc > 1:2073807/1‑66 (MQ=255) gcgcAACAGTGGGCGCGCCAGCTCCAGCGCACGCATTCGCGCCATCTGGAAGTGCTGCCATGGAcc > 1:992936/1‑66 (MQ=255) gcgcAACAGTGGGCGCGCCAGCTCCAGCGCACGCATTCGCGCCATCTGGAAGTGCTGCCATGGAcc > 1:1631692/1‑66 (MQ=255) gcgcAACAGTGGGCGCGCCAGCTCCAGCGCACGCATTCGCGCCATCTGGAAGTGCTGCCATGGAc > 1:1734267/1‑65 (MQ=255) aCAGTGGGCGCGCCAGCTCCAGCGCACGCATTCGCGCCATCTGGAAGTGTTGCCATGGACCAATAGAtt < 1:917203/69‑1 (MQ=255) aCAGTGGGCGCGCCAGCTCCAGCGCACGCATTCGCGCCATCTGGAAGTGTTGCCATGGACCAATAGAtt < 1:702687/69‑1 (MQ=255) aCAGTGGGCGCGCCAGCTCCAGCGCACGCATTCGCGCCATCTGGAAGTGTTGCCATGGACCAATAGAtt < 1:43326/69‑1 (MQ=255) gTGGGCGCGCCAGCTCCAGCGCACGCATTCGCGCCATCTGGAAGTGTTGCCATGGACCAATAGATTTAc < 1:1929214/69‑1 (MQ=255) gTGGGCGCGCCAGCTCCAGCGCACGCATTCGCGCCATCTGGAAGTGTTGCCATGGACCAATAGATTTAc < 1:2166241/69‑1 (MQ=255) gTGGGCGCGCCAGCTCCAGCGCACGCATTCGCGCCATCTGGAAGTGTTGCCATGGACCAATAGATTTAc < 1:3061090/69‑1 (MQ=255) gTGGGCGCGCCAGCTCCAGCGCACGCATTCGCGCCATCTGGAAGTGTTGCCATGGACCAATAGATTTAc < 1:2077022/69‑1 (MQ=255) gTGGGCGCGCCAGCTCCAGCGCACGCATTCGCGCCATCTGGAAGTGTTGCCATGGACCAATAGATTTAc < 1:2426985/69‑1 (MQ=255) gTGGGCGCGCCAGCTCCAGCGCACGCATTCGCGCCATCTGGAAGTGTTGCCATGGACCAATAGATTTAc < 1:3280013/69‑1 (MQ=255) gggCGCGCCAGCTCCAGCGCACGCATTCGCGCCATCTGGAAGTGTTGCCATGGACCAATAGATTTACCa < 1:34661/69‑1 (MQ=255) gggCGCGCCAGCTCCAGCGCACGCATTCGCGCCATCTGGAAGTGTTGCCATGGACCAATAGATTTACCa > 1:1946055/1‑69 (MQ=255) ggCGCGCCAGCTCCAGCGCACGCATTCGCGCCATCTGGAAGTGTTGCCATGGACCAATAGATTTACCaa < 1:814621/69‑1 (MQ=255) gCTCCAGCGCACGCATTCGCGCCATCTGGAAGTGTTGc < 1:1257736/38‑1 (MQ=255) ccAGCGCACGCATTCGCGCCATCTGGAAGTGTTGCCATGGACCAATAGATTTACCAAACCACGCATCGt > 1:1871953/1‑69 (MQ=255) gcgcACGCATTCGCGCCATCTGGAAGTGTTGCCATGGACCAATAGAtt < 1:2677117/48‑1 (MQ=255) ctcaTTCGCGCCATCTGGAAGTGCTGCCATGGACCAATAGACTTACCAAACCACGCATCGTTGGAGATa < 1:446358/67‑1 (MQ=255) cgcaTTCGCGCCATCTGGAAGTGCTGCCATGGACCAATAGACTTACCAAACCACGCATCGTTGGAGATa < 1:103146/69‑1 (MQ=255) cgcaTTCGCGCCATCTGGAAGTGCTGCCATGGACCAATAGACTTACCAAACCACGCATCGTTGGAGATa < 1:2839220/69‑1 (MQ=255) cgcaTTCGCGCCATCTGGAAGTGCTGCCATGGACCAATAGACTTACCAAACCACGCATCGTTGGAGATa < 1:2896197/69‑1 (MQ=255) cgcaTTCGCGCCATCTGGAAGTGCTGCCATGGACCAATAGACTTACCAAACCACGCATCGTTGGAGATa < 1:3100486/69‑1 (MQ=255) cgcaTTCGCGCCATCTGGAAGTGCTGCCATGGACCAATAGACTTACCAAACCACGCATCGTTGGAGATa < 1:595649/69‑1 (MQ=255) cgcaTTCGCGCCATCTGGAAGTGCTGCCATGGACCAATAGACTTACCAAACCACGCATCGTTGGAGATa < 1:3280841/69‑1 (MQ=255) cgcaTTCGCGCCATCTGGAAGTGCTGCCATGGACCAATAGACTTACCAAACCACGCATCGTTGGAGATa < 1:422128/69‑1 (MQ=255) cgcaTTCGCGCCATCTGGAAGTGCTGCCATGGACCAATAGACTTACCAAACCACGCATCGTTGGAGATa < 1:525434/69‑1 (MQ=255) cgcaTTCGCGCCATCTGGAAGTGCTGCCATGGACCAATAGACTTACCAAACCACGCATCGTTGGAGATa < 1:1246462/69‑1 (MQ=255) cgcaTTCGCGCCATCTGGAAGTGCTGCCATGGACCAATAGACTTACCAAACCACGCATCGTTGGAGATa < 1:1570363/69‑1 (MQ=255) cgcaTTCGCGCCATCTGGAAGTGCTGCCATGGACCAATAGACTTACCAAACCACGCATCGTTGGAGATa < 1:1400705/69‑1 (MQ=255) cgcaTTCGCGCCATCTGGAAGTGCTGCCATGGACCAATAGACTTACCAAACCACGCATCGTTGGAGATa < 1:2096917/69‑1 (MQ=255) cgcaTTCGCGCCATCTGGAAGTGCTGCCATGGACCAATAGACTTACCAAACCACGCATCGTTGGAGATa < 1:2185811/69‑1 (MQ=255) cgcaTTCGCGCCATCTGGAAGTGCTGCCATGGACCAATAGACTTACCAAACCACGCATCGTTGGAGATa < 1:1204419/69‑1 (MQ=255) cgcaTTCGCGCCATCTGGAAGTGCTGCCATGGACCAATAGACTTACCAAACCACGCATCGTTGGAGATa < 1:2205091/69‑1 (MQ=255) cgcaTTCGCGCCATCTGGAAGTGCTGCCATGGACCAATAGACTTACCAAACCACGCATCGTTGGAGATa < 1:2249382/69‑1 (MQ=255) cgcaTTCGCGCCATCTGGAAGTGCTGCCATGGACCAATAGACTTACCAAACCACGCATCGTTGGAGATa < 1:1171634/69‑1 (MQ=255) gcaTTCGCGCCATCTGGAAGTGCTGCCATGGACCAATAGACTTACCAAACCACGCATCGTTGGAGATa < 1:3222195/68‑1 (MQ=255) cgcgCCATCTGGAAGTGTTGCCATGGACCAATAGATTTACCAAACCACGCAt > 1:795146/1‑52 (MQ=255) cgcgCCATCTGGAAGTGTTGCCATGGACCAATAGATTTACCAAACCACGCATCGTTGgaga < 1:1348661/61‑1 (MQ=255) cgcgCCATCTGGAAGTGTTGCCATGGACCAATAGATTTACCAAACCACGCATCGTTGgaga > 1:2303042/1‑61 (MQ=255) cgcgCCATCTGGAAGTGTTGCCATGGACCAATAGATTTACCAAACCACGCATCGTTGgaga > 1:553400/1‑61 (MQ=255) cgcgCCATCTGGAAGTGTTGCCATGGACCAATAGATTTACCAAACCACGCATCGTTGgaga < 1:1498282/61‑1 (MQ=255) cgcgCCATCTGGAAGTGTTGCCATGGACCAATAGATTTACCAAACCACGCATCGTTGgaga < 1:2436909/61‑1 (MQ=255) cgcgCCATCTGGAAGTGTTGCCATGGACCAATAGATTTACCAAACCACGCATCGTTGgag > 1:1088289/1‑60 (MQ=255) cgcgCCATCTGGAAGTGTTGCCATGGACCAATAGATTTACCAAACCACGCATCGTTGGAGATAGTc > 1:1025786/1‑66 (MQ=255) cgcgCCATCTGGAAGTGTTGCCATGGACCAATAGATTTACCAAACCACGCATCGTTGGAGATAGTc > 1:312404/1‑66 (MQ=255) tCTGGAAGTGCTGCCATGGACCAATAGACTTACCAAACCACGCATCGTTGGAGATAGTCAGCAGATAGt < 1:1848766/69‑1 (MQ=255) tCTGGAAGTGCTGCCATGGACCAATAGACTTACCAAACCACGCATCGTTGGAGATAGTCAGCAGATAGt < 1:850175/69‑1 (MQ=255) cTGGAAGTGCTGCCATGGACCAATAGACTTACCAAACCACGCATCGTTGGAGATAGTCAGCAGATAGt < 1:593535/68‑1 (MQ=255) gtTGCCATGGACCAATAGATTTACCAAACCACGCATCGTTGGAGATAGTCAGCAGATAGTCgg < 1:2540620/63‑1 (MQ=255) gtTGCCATGGACCAATAGATTTACCAAACCACGCATCGTTGGAGATAGTCAGCAGATAGTCgg < 1:1893140/63‑1 (MQ=255) gtTGCCATGGACCAATAGATTTACCAAACCACGCATCGTTGGAGATAGTCAGCAGATAGTCgg < 1:2734290/63‑1 (MQ=255) gtTGCCATGGACCAATAGATTTACCAAACCACGCATCGTTGGAGATAGTCAGCAGATAGTCgg < 1:792478/63‑1 (MQ=255) gtTGCCATGGACCAATAGATTTACCAAACCACGCATCGTTGGAGATAGTCAGCAGATAGTCgg < 1:2160386/63‑1 (MQ=255) gtTGCCATGGACCAATAGATTTACCAAACCACGCATCGTTGGAGATAGTCAGCAGATAGTCgg < 1:1604947/63‑1 (MQ=255) gtTGCCATGGACCAATAGATTTACCAAACCACGCATCGTTGGAGATAGTCACCAGATAGTCgg < 1:2325026/63‑1 (MQ=255) gtTGCCATGGACCAATAGATTTACCAAACAACGCATCGTTGGAGATAGTCAGCAGATAGTCgg < 1:129508/63‑1 (MQ=255) ttGCCATGGACCAATAGATTTACCAAACCACGCATCGTTGGAGATAGTCAGCAGATAGTCgg < 1:1212280/62‑1 (MQ=255) ttGCCATGGACCAATAGATTTACCAAACCACGCATCGTTGGAGATAGTCAGCAGATAGTCGGTATCCgg > 1:3145895/1‑69 (MQ=255) ttGCCATGGACCAATAGATTTACCAAACCACGCATCGTTGGAGATAGTCAGCAGATAGTCGGTATCCgg > 1:1825712/1‑69 (MQ=255) ttGCCATGGACCAATAGATTTACCAAACCACGCATCGTTGGAGATAGTCAGCAGATAGTCGGTATCCgg > 1:1154593/1‑69 (MQ=255) ttGCCATGGACCAATAGATTTACCAAACCACGCATCGTTGGAGATAGTCAGCAGATAGTCGGTATCCgg > 1:2259797/1‑69 (MQ=255) ttGCCATGGACCAATAGATTTACCAAACCACGCATCGTTGGAGATAGTCAGCAGATAGTCGGTATCCgg > 1:1184524/1‑69 (MQ=255) ttGCCATGGACCAATAGATTTACCAAACCACGCATCGTTGGAGATAGTCAGCAGATAGTCGGTATCCgg > 1:1812055/1‑69 (MQ=255) ttGCCATGGACCAATAGATTTACCAAACCACGCATCGTTGGAGATAGTCAGCAGATAGTCGGTATCCgg > 1:834287/1‑69 (MQ=255) ttGCCATGGACCAATAGATTTACCAAACCACGCATCGTTGGAGATAGTCAGCAGATAGTCGGTATCCgg > 1:1199496/1‑69 (MQ=255) ttGCCATGGACCAATAGATTTACCAAACCACGCATCGTTGGAGATAGTCAGCAGATAGTCGGTATCCgg > 1:2201432/1‑69 (MQ=255) ttGCCATGGACCAATAGATTTACCAAACCACGCATCGTTGGAGATAGTCAGCAGATAGTCGGTATCCgg > 1:1990047/1‑69 (MQ=255) ttGCCATGGACCAATAGATTTACCAAACCACGCATCGTTGGAGATAGTCAGCAGATAGTCGGTATCCgg > 1:3107741/1‑69 (MQ=255) ttGCCATGGACCAATAGATTTACCAAACCACGCATCGTTGGAGATAGTCAGCAGATAGTCGGTATCCgc > 1:28528/1‑68 (MQ=255) ttGCCATGGACCAATAGATTTACCAAACCACGCATCGTTGGAGATAGTCAGCAGATAGTCGGTATCCg > 1:1682258/1‑68 (MQ=255) | CCGTTGTTGGTGCTGCGCAACAGTGGGCGCGCCAGCTCCAGCGCACGCATTCGCGCCATCTGGAAGTGTTGCCATGGACCAATAGATTTACCAAACCACGCATCGTTGGAGATAGTCAGCAGATAGTCGGTATCCGG > minE/412843‑412979 |
| Alignment Legend |
|---|
Aligned base mismatch/match (shaded by quality score): ATCG/ATCG < 3 ≤ ATCG/ATCG < 21 ≤ ATCG/ATCG < 32 ≤ ATCG/ATCG < 36 ≤ ATCG/ATCG |
Unaligned base: atcg Masked matching base: atcg Alignment gap: ‑ Deleted base: ‑ |