| Predicted mutation | |||||||
|---|---|---|---|---|---|---|---|
| evidence | seq id | position | mutation | freq | annotation | gene | description |
| RA | minE | 413,091 | C→T | 64.6% | S364S (TCG→TCA) | lnt ← | apolipoprotein N‑acyltransferase |
| Read alignment evidence... | |||||||||||
|---|---|---|---|---|---|---|---|---|---|---|---|
| seq id | position | ref | new | freq | score (cons/poly) | reads | annotation | genes | product | ||
| * | minE | 413,091 | 0 | C | T | 64.6% | 28.2 / 25.8 | 48 | S364S (TCG→TCA) | lnt | apolipoprotein N‑acyltransferase |
| Reads supporting (aligned to +/- strand): ref base C (14/3); new base T (11/20); total (25/23) | |||||||||||
| Fisher's exact test for biased strand distribution p-value = 2.54e-03 | |||||||||||
| Kolmogorov-Smirnov test that lower quality scores support variant p-value = 1.00e+00 | |||||||||||
ATAGCCGCAGTAAGCTCAATACCATTTGCCGACAGCGGCGGCTGGATATATGGCCCACGGCTGAACGACGACATCGGCAGATCAAAGAACGGTGCTAACGGACGCAGAATCGACTCCAGCGGGACAAA > minE/413026‑413153 | aTAGCCGCAGTAAGCTCAATACCATTTGCCGACAGCGGCGGCTGGATATATGGCCCACGGCTGAacgac < 1:145945/69‑1 (MQ=255) tAGCCGCAGTAAGCTCAATACCATTTGCCGACAGCGGCGGCTGGATATATGGCCCACGGCTGAacgac < 1:2164338/68‑1 (MQ=255) tACCATTTGCCGACAGCGGCGGCTGGATATATGGCCCACGGCTGAACGACGACATCGGCAGATCAAAg < 1:3072716/68‑1 (MQ=255) tACCATTTGCCGACAGCGGCGGCTGGATATATGGCCCACGGCTGAACGACGACATCGGCAGATCAAAg < 1:1721012/68‑1 (MQ=255) tACCATTTGCCCACAGCGGCGGCTGGATATATGGCCCACGGCTGAACGACGACATCGGCAGATCAAAg < 1:2635460/68‑1 (MQ=255) ccATTTGCCGACAGCGGCGGCTGGATATATGGCCCACGGCTGAACGACGACATCGGCAGATCAAAGAAc > 1:1339300/1‑69 (MQ=255) ccATTTGCCGACAGCGGCGGCTGGATATATGGCCCACGGCTGAACGACGACATCGGCAGATCAAAGAAc > 1:1436920/1‑69 (MQ=255) ccATTTGCCGACAGCGGCGGCTGGATATATGGCCCACGGCTGAACGACGACATCGGCAGATCAAAGAAc > 1:1536832/1‑69 (MQ=255) aCAGCGGCGGCTGGATATATGGCCCACGGCTGAacgac < 1:3382640/38‑1 (MQ=255) aGCGGCGGCTGGATATATGGCCCACGGCTGAACGACGACATCGGCAGATCAAAGAACGGTGCt > 1:1163170/1‑63 (MQ=255) aGCGGCGGCTGGATATATGGCCCACGGCTGAACGACGACATCGGCAGATCAAAGAACGGTGCt > 1:1682644/1‑63 (MQ=255) aGCGGCGGCTGGATATATGGCCCACGGCTGAACGACGACATCGGCAGATCAAAGAACGGTGCTAACGGa > 1:608175/1‑69 (MQ=255) aGCGGCGGCTGGATATATGGCCCACGGCTGAACGACGACATCGGCAGATCAAAGAACGGTGCTAACGGa > 1:2050770/1‑69 (MQ=255) aGCGGCGGCTGGATATATGGCCCACGGCTGAACGACGACATCGGCAGATCAAAGAACGGTGCTAACGGa > 1:1593153/1‑69 (MQ=255) atatGGCCCACGGCTGAACGACGACATCGGCAGATCAAAGAACGGTGCTAACGGACg > 1:806745/1‑57 (MQ=255) atatGGCCCACGGCTGAACGACGACATCGGCAGATCAAAGAACGGTGCTAACGGACGCAGAATCGAc > 1:2646345/1‑67 (MQ=255) atatGGCCCACGGCTGAACGACGACATCGGCAGATCAAAGAACGGTGCTAACGGACGCAGAATCGAc > 1:350544/1‑67 (MQ=255) atGGTCCGCGGCTGAATGAAGACATCGGCAAATCAAAGAACGGTGCt < 1:945694/47‑1 (MQ=255) atGGTCCGCGGCTGAATGAAGACATCGGCAAATCAAAGAACGGTGCt < 1:3362736/47‑1 (MQ=255) atGGTCCGCGGCTGAATGAAGACATCGGCAAATCAAAGAACGGTGCt < 1:866392/47‑1 (MQ=255) atGGTCCGCGGCTGAATGAAGACATCGGCAAATCAAAGAACGGTGCt < 1:3383061/47‑1 (MQ=255) atGGTCCGCGGCTGAATGAAGACATCGGCAAATCAAAGAACGGTGCt < 1:3420669/47‑1 (MQ=255) atGGTCCGCGGCTGAATGAAGACATCGGCAAATCAAAGAACGGTGCt < 1:351491/47‑1 (MQ=255) atGGTCCGCGGCTGAATGAAGACATCGGCAAATCAAAGAACGGTGCt < 1:462443/47‑1 (MQ=255) atGGTCCGCGGCTGAATGAAGACATCGGCAAATCAAAGAACGGTGCt < 1:478139/47‑1 (MQ=255) atGGTCCGCGGCTGAATGAAGACATCGGCAAATCAAAGAACGGTGCt < 1:583354/47‑1 (MQ=255) atGGTCCGCGGCTGAATGAAGACATCGGCAAATCAAAGAACGGTGCt < 1:60565/47‑1 (MQ=255) atGGTCCGCGGCTGAATGAAGACATCGGCAAATCAAAGAACGGTGCt < 1:2937674/47‑1 (MQ=255) atGGTCCGCGGCTGAATGAAGACATCGGCAAATCAAAGAACGGTGCt < 1:13825/47‑1 (MQ=255) atGGTCCGCGGCTGAATGAAGACATCGGCAAATCAAAGAACGGTGCt < 1:1820306/47‑1 (MQ=255) atGGTCCGCGGCTGAATGAAGACATCGGCAAATCAAAGAACGGTGCt < 1:1846753/47‑1 (MQ=255) atGGTCCGCGGCTGAATGAAGACATCGGCAAATCAAAGAACGGTGCt < 1:2189286/47‑1 (MQ=255) atGGTCCGCGGCTGAATGAAGACATCGGCAAATCAAAGAACGGTGCt < 1:2272132/47‑1 (MQ=255) atGGTCCGCGGCTGAATGAAGACATCGGCAAATCAAAGAACGGTGCt < 1:267907/47‑1 (MQ=255) atGGTCCGCGGCTGAATGAAGACATCGGCAAATCAAAGAACGGTGCt < 1:2277951/47‑1 (MQ=255) atGGTCCGCGGCTGAATGAAGACATCGGCAAATCAAAGAACGGTGCt < 1:2320419/47‑1 (MQ=255) tGGTCCGCGGCTGAATGAAGACATCGGCAAATCAAAGAACGGTGCt < 1:2776181/46‑1 (MQ=255) tGGCCCACGGCTGAACGACGACATCGGCAGATCAAAGAACGGTGCTAACgg > 1:1106052/1‑51 (MQ=255) tGGCCCACGGCTGAACGACGACATCGGCAGATCAAAGAACGGTGCTAACGGACGCAGAATCGACTCCAg > 1:3382393/1‑69 (MQ=255) ccgcGGCTGAATGAGGACATCGGCAAATCAAAGAACGGTGCTAACGGACGCAGTATCGACTCCAGTgg > 1:3195376/4‑68 (MQ=255) ccgcGGCTGAATGAAGACATCGGCAAATCAAAGAACGGTGCTAACGGACGCAGTATCGACTCCAGTgg > 1:2639209/4‑68 (MQ=255) ccgcGGCTGAATGAAGACATCGGCAAATCAAAGAACGGTGCTAACGGACGCAGTATCGACTCCAGTgg > 1:446005/4‑68 (MQ=255) ccgcGGCTGAATGAAGACATCGGCAAATCAAAGAACGGTGCTAACGGACGCAGTATCGACTCCAGTgg > 1:2853679/4‑68 (MQ=255) ccgcGGCTGAATGAAGACATCGGCAAATCAAAGAACGGTGCTAACGGACGCAGTATCGACTCCAGTgg > 1:3303627/4‑68 (MQ=255) ccgcGGCTGAATGAAGACATCGGCAAATCAAAGAACGGTGCTAACGGACGCAGTATCGACTCCAGTgg > 1:1711706/4‑68 (MQ=255) ccgcGGCTGAATGAAGACATCGGCAAATCAAAGAACGGTGCTAACGGACGCAGTATCGACTCCAGTgg > 1:775139/4‑68 (MQ=255) ccgcGGCTGAATGAAGACATCGGCAAATCAAAGAACGGTGCTAACGGACGCAGTATCGACTCCAGTgg > 1:3094038/4‑68 (MQ=255) ccgcGGCTGAATGAAGACATCGGCAAATCAAAGAACGGTGCTAACGGACGCAGTATCGACTCCAGTgg > 1:1187851/4‑68 (MQ=255) ccgcGGCTGAATGAAGACATCGGCAAATCAAAGAACGGTGCTAACGGACGCAGTATCGACTCCAGTgg > 1:911651/4‑68 (MQ=255) ccgcGGCTGAATGAAGACATCGGCAAATCAAAGAACGGTGCTAACGGACGCAGTATCGACTCCAGTgg > 1:3046505/4‑68 (MQ=255) gCTGAACGACGACATCGGCAGATCAAAGAACGGTGCTAACGGACGCAGAATCGACTCCAGCGGGACaaa > 1:911544/1‑69 (MQ=255) | ATAGCCGCAGTAAGCTCAATACCATTTGCCGACAGCGGCGGCTGGATATATGGCCCACGGCTGAACGACGACATCGGCAGATCAAAGAACGGTGCTAACGGACGCAGAATCGACTCCAGCGGGACAAA > minE/413026‑413153 |
| Alignment Legend |
|---|
Aligned base mismatch/match (shaded by quality score): ATCG/ATCG < 3 ≤ ATCG/ATCG < 14 ≤ ATCG/ATCG < 32 ≤ ATCG/ATCG < 36 ≤ ATCG/ATCG |
Unaligned base: atcg Masked matching base: atcg Alignment gap: ‑ Deleted base: ‑ |