Predicted mutation
evidence seq id position mutation freq annotation gene description
RA minE 413,265 C→T 27.9% K306K (AAG→AAA lnt ← apolipoprotein N‑acyltransferase

Read alignment evidence...
  seq id position ref new freq score (cons/poly) reads annotation genes product
*minE413,2650CT27.9% 60.7 / 20.5 57K306K (AAG→AAAlntapolipoprotein N‑acyltransferase
Reads supporting (aligned to +/- strand):  ref base C (21/20);  new base T (14/2);  total (35/22)
Fisher's exact test for biased strand distribution p-value = 1.52e-02
Kolmogorov-Smirnov test that lower quality scores support variant p-value = 1.00e+00

ACCTTTACCCAGCGTGATGATGGTGTTGTAGGTATCGTAGCGGTTCTGCTTATTGAGACGCGCGTCGACAATCCCGGTTACCAGCGAGCTACCTTTATCACGCAACTCACCGTC  >  minE/413217‑413330
                                                |                                                                 
aCCTTTACCCAGCGTGATGATGGTGTTGTAGGTATCGTAGCGGTTCTGCTTATTGAGACGCGCGTCGAc                                               <  1:556577/69‑1 (MQ=255)
aCCTTTACCCAGCGTGATGATGGTGTTGTAGGTATCGTAGCGGTTCTGCTTATTGAGACGCGCGTCGAc                                               <  1:3283049/69‑1 (MQ=255)
aCCTTTACCCAGCGTGATGATGGTGTTGTAGGTATCGTAGCGGTTCTGCTTATTGAGACGCGCGTCGAc                                               <  1:1245425/69‑1 (MQ=255)
aCCTTTACCCAGCGTGATGATGGTGTTGTAGGTATCGTAGCGGTTCTGCTTATTGAGACGCGCGTCGAc                                               <  1:2872504/69‑1 (MQ=255)
aCCTTTACCCAGCGTGATGATGGTGTTGTAGGTATCGTAGCGGTTCTGCTTATTGAGACGCGCGTCGAc                                               <  1:2467426/69‑1 (MQ=255)
               gatgatGGTGTTGTAGGTATCGTAGCGGGTCTGTTTATTGAGACGCGCGTCGACAATCCCGGtg                                     <  1:3311161/64‑2 (MQ=255)
                atgatgGTGTTGTAGGTATCGTAGCGGTTCTGCTTATTga                                                            >  1:2729285/1‑40 (MQ=255)
                atgatgGTGTTGTAGGTATCGTAGCGGTTCTGCTTATTGAGACGCGCGTCTACAATCCCGGTTACCa                                 >  1:296176/1‑67 (MQ=255)
                atgatgGTGTTGTAGGTATCGTAGCGGTTCTGCTTATTGAGACGCGCGTCGACAATCCCGGTTACCa                                 >  1:75985/1‑67 (MQ=255)
                atgatgGTGTTGTAGGTATCGTAGCGGTTCTGCTTATTGAGACGCGCGTCGACAATCCCGGTTACCa                                 >  1:314781/1‑67 (MQ=255)
                atgatgGTGTTGTAGGTATCGTAGCGGTTCTGCTTATTGAGACGCGCGTCGACAATCCCGGTTACCa                                 >  1:2876556/1‑67 (MQ=255)
                atgatgGTGTTGTAGGTATCGTAGCGGTTCTGCTTATTGAGACGCGCGTCGACAATCCCGGTTACCa                                 >  1:2848549/1‑67 (MQ=255)
                atgatgGTGTTGTAGGTATCGTAGCGGTTCTGCTTATTGAGACGCGCGTCGACAATCCCGGTTACCa                                 >  1:2758282/1‑67 (MQ=255)
                atgatgGTGTTGTAGGTATCGTAGCGGTTCTGCTTATTGAGACGCGCGTCGACAATCCCGGTTACCa                                 >  1:3353775/1‑67 (MQ=255)
                atgatgGTGTTGTAGGTATCGTAGCGGTTCTGCTTATTGAGACGCGCGTCGACAATCCCGGTTACCa                                 >  1:2308800/1‑67 (MQ=255)
                atgatgGTGTTGTAGGTATCGTAGCGGTTCTGCTTATTGAGACGCGCGTCGACAATCCCGGTTACCa                                 >  1:344076/1‑67 (MQ=255)
                atgatgGTGTTGTAGGTATCGTAGCGGTTCTGCTTATTGAGACGCGCGTCGACAATCCCGGTTACCa                                 >  1:1227453/1‑67 (MQ=255)
                atgatgGTGTTGTAGGTATCGTAGCGGTTCTGCTTATTGAGACGCGCGTCGACAATCCCGGTTACCa                                 >  1:9259/1‑67 (MQ=255)
                atgatgGTGTTGTAGGTATCGTAGCGGTTCTGCTTATTGAGACGCGCGTCGACAATCCCGGTTACCa                                 >  1:1339762/1‑67 (MQ=255)
                  gatgGTGTTGTAGGTATCGTAGCGGTTCTGCTTATTGAGACGCGCGTCGACAATCCCGGTTACCAGCg                              <  1:1871507/68‑1 (MQ=255)
                  gatgGTGTTGTAGGTATCGTAGCGGTTCTGCTTATTGAGACGCGCGTCGACAATCCCGGTTACCAGCg                              <  1:2570638/68‑1 (MQ=255)
                  gatgGTGTTGTAGGTATCGTAGCGGTTCTGCTTATTGAGACGCGCGTCGACAATCCCGGTTACCAGCg                              <  1:1328119/68‑1 (MQ=255)
                  gatgGTGTTGTAGGTATCGTAGCGGTTCTGCTTATTGAGACGCGCGTCGACAATCCCGGTTACCAGCg                              <  1:1450682/68‑1 (MQ=255)
                        gttgtAGGTATCGTAGCGGTTCTGCTTATTGAGACGCGCGTCGACAATCCCGGTTACCAGCGa                             <  1:1614600/63‑1 (MQ=255)
                         ttgtAGGTATCGTAGCGGTTCTGTTTATTGAGACGCGCGTCGACAATCCCGGtg                                     <  1:92906/54‑2 (MQ=39)
                           gtAGGTATCGTAGCGGTTCTGCTTATTGAGACGCGCGTCGACAATCCCGGTTACCAGCGAGCTACCttt                    <  1:2600640/69‑1 (MQ=255)
                           gtAGGTATCGTAGCGGTTCTGCTTATTGAGACGCGCGTCGACAATCCCGGTTACCAGCGAGCTACCttt                    <  1:2611343/69‑1 (MQ=255)
                           gtAGGTATCGTAGCGGTTCTGCTTATTGAGACGCGCGTCGACAATCCCGGTTACCAGCGAGCTACCttt                    <  1:1838563/69‑1 (MQ=255)
                           gtAGGTATCGTAGCGGTTCTGCTTATTGAGACGCGCGTCGACAATCCCGGTTACCAGCGAGCTACCtt                     <  1:1040759/68‑1 (MQ=255)
                           gtAGGTATCGTAGCGGTTCTGCTTATTGAGACGCGCGTCGACAATCCCGGTTACCAGCGAGCTACCtt                     <  1:1214735/68‑1 (MQ=255)
                           gtAGGTATCGTAGCGGTTCTGCTTATTGAGACGCGCGTCGACAATCCCGGTTACCAGCGAGCTACCtt                     <  1:1281658/68‑1 (MQ=255)
                           gtAGGTATCGTAGCGGTTCTGCTTATTGAGACGCGCGTCGACAATCCCGGTTACCAGCGAGCTACCtt                     <  1:1461540/68‑1 (MQ=255)
                           gtAGGTATCGTAGCGGTTCTGCTTATTGAGACGCGCGTCGACAATCCCGGTTACCAGCGAGCTACCtt                     <  1:1745685/68‑1 (MQ=255)
                              ggTATCGTAGCGGTTCTGCTTATTGAGACGCGCGTCGACAATCCCGGTTa                                    >  1:1992657/1‑50 (MQ=255)
                              ggTATCGTAGCGGTTCTGCTTATTGAGACGCGCGTCGACAATCCCGGTTACCAGCGAGCTACCTTTAt                  >  1:822597/1‑68 (MQ=255)
                              ggTATCGTAGCGGTTCTGCTTATTGAGACGCGCGTCGACAATCCCGGTTACCAGCGAGCTACCTTTATc                 >  1:1714689/1‑69 (MQ=255)
                              ggTATCGTAGCGGTTCTGCTTATTGAGACGCGCGTCGACAATCCCGGTTACCAGCGAGCTACCTTTATc                 >  1:2193174/1‑69 (MQ=255)
                              ggTATCGTAGCGGTTCTGCTTATTGAGACGCGCGTCGACAATCACgg                                       >  1:316170/1‑47 (MQ=255)
                               gTATCGTAGCGGTTCTGCTTATTGAGACGCGCGTCGACAATCCCGGTTACCAGCGAGCTACCTTTATCa                >  1:692732/1‑69 (MQ=255)
                                tATCGTAGCGGTTCTGCTTATTGAGACGCGCGTCGACAATCCCGGTTACCAGCGAGCTACCTTTATCa                >  1:2505720/1‑68 (MQ=255)
                                tATCGTAGCGGTTCTGCTTATTGAGACGCGCGTCGACAATCCCGGTTACCAGCGAGCTACCTTTATCa                >  1:3129310/1‑68 (MQ=255)
                                 aTCGTAGCGGTTCTGTTTATTGAGACGCGCGTCGACAATCCCGGTGACCAGCGAGCTACCTTTATcgc               >  1:2742767/1‑66 (MQ=255)
                                 aTCGTAGCGGTTCTGTTTATTGAGACGCGCGTCGACAATCCCGGTGACCAGCGAGCTACCTTTATcgc               >  1:849962/1‑66 (MQ=255)
                                 aTCGTAGCGGTTCTGTTTATTGAGACGCGCGTCGACAATCCCGGTGACCAGCGAGCTACCTTTATcgc               >  1:707423/1‑66 (MQ=255)
                                 aTCGTAGCGGTTCTGTTTATTGAGACGCGCGTCGACAATCCCGGTGACCAGCGAGCTACCTTTATcgc               >  1:921579/1‑66 (MQ=255)
                                 aTCGTAGCGGTTCTGTTTATTGAGACGCGCGTCGACAATCCCGGTGACCAGCGAGCTACCTTTATcgc               >  1:952172/1‑66 (MQ=255)
                                 aTCGTAGCGGTTCTGTTTATTGAGACGCGCGTCGACAATCCCGGTGACCAGCGAGCTACCTTTATcgc               >  1:431113/1‑66 (MQ=255)
                                 aTCGTAGCGGTTCTGTTTATTGAGACGCGCGTCGACAATCCCGGTGACCAGCGAGCTACCTTTATcgc               >  1:3310778/1‑66 (MQ=255)
                                 aTCGTAGCGGTTCTGTTTATTGAGACGCGCGTCGACAATCCCGGTGACCAGCGAGCTACCTTTATcgc               >  1:2757736/1‑66 (MQ=255)
                                 aTCGTAGCGGTTCTGTTTATTGAGACGCGCGTCGACAATCCCGGTGACCAGCGAGCTACCTTTATcgc               >  1:1951327/1‑66 (MQ=255)
                                 aTCGTAGCGGTTCTGTTTATTGAGACGCGCGTCGACAATCCCGGTGACCAGCGAGCTACCTTTATcgc               >  1:1309657/1‑66 (MQ=255)
                                 aTCGTAGCGGTTCTGTTTATTGAGACGCGCGTCGACAATCCCGGTGACCAGCGAGCTACCTTTATcgc               >  1:1158239/1‑66 (MQ=255)
                                 aTCGTAGCGGTTCTGTTTATTGAGACGCGCGTCGACAATCCCGGTGACCAGCGAGCTACCTTTATcgc               >  1:1109232/1‑66 (MQ=255)
                                 aTCGTAGCGGTTCTGTTTATTGAGACGCGCGTCGACAATCCCGGTGACCAGCGAGCTACCTTTATcg                >  1:1601959/1‑66 (MQ=255)
                                 aTCGTAGCGGTTCTGTTTATTGAGACGCGCGTCGACAATCCCGG‑‑ACCAGCGAGCTACCTTTATCGCGCa            >  1:748042/1‑69 (MQ=255)
                                 aTCGTAGCGGTTCTGCTTATTGAGACGCGCGTGGACAATCCCGGTTACCAGCGAGCTACCtt                     <  1:377101/62‑1 (MQ=255)
                                             cTGCTTATTGAGACGCGCGTCGACAATCCCGGTTACCAGCGAGCTACCTTTATCACGCAACTCACCGTc  <  1:363713/69‑1 (MQ=255)
                                                |                                                                 
ACCTTTACCCAGCGTGATGATGGTGTTGTAGGTATCGTAGCGGTTCTGCTTATTGAGACGCGCGTCGACAATCCCGGTTACCAGCGAGCTACCTTTATCACGCAACTCACCGTC  >  minE/413217‑413330

Alignment Legend
Aligned base mismatch/match (shaded by quality score): ATCG/ATCG < 3 ≤ ATCG/ATCG < 14 ≤ ATCG/ATCG < 32 ≤ ATCG/ATCG < 36 ≤ ATCG/ATCG
Unaligned base: atcg    Masked matching base: atcg    Alignment gap:     Deleted base: