| Predicted mutation | |||||||
|---|---|---|---|---|---|---|---|
| evidence | seq id | position | mutation | freq | annotation | gene | description |
| RA | minE | 441,066 | A→G | 70.7% | I167I (ATT→ATC) | potE ← | putrescine/proton symporter |
| Read alignment evidence... | |||||||||||
|---|---|---|---|---|---|---|---|---|---|---|---|
| seq id | position | ref | new | freq | score (cons/poly) | reads | annotation | genes | product | ||
| * | minE | 441,066 | 0 | A | G | 70.7% | 48.5 / 20.0 | 51 | I167I (ATT→ATC) | potE | putrescine/proton symporter |
| Reads supporting (aligned to +/- strand): ref base A (8/7); new base G (28/8); total (36/15) | |||||||||||
| Fisher's exact test for biased strand distribution p-value = 1.01e-01 | |||||||||||
| Kolmogorov-Smirnov test that lower quality scores support variant p-value = 9.37e-01 | |||||||||||
ACGGTGCATGATGCGGATTCCAGGAATCAACGTACAGCGTCGGGCTAAACCAGAACCAGCCAATAATGCACAGACCGACGACCGGAATAATGACCCCCCACACGGTAATGCTACT > minE/441005‑441119 | aCGGTGCATGATGCGGATTCCAGGAATCAACGTACAGCGTCGGGCTAAACCAGAACCAGCCAATAATg > 1:1999833/1‑68 (MQ=255)aCGGTGCATGATGCGGATTCCAGGAATCAACGTACAGCGTCGGGCTAAACCAGAACCAGCCAATAATg > 1:2772264/1‑68 (MQ=255)aCGGTGCATGATGCGGATTCCAGGAATCAACGTACAGCGTCGGGCTAAACCAGAACCAGCCAATAATg > 1:162058/1‑68 (MQ=255)aCGGTGCATGATGCGGATTCCAGGAATCAACGTACAGCGTCGGGCTAAACCAGAACCAGCCAATAATg > 1:2827632/1‑68 (MQ=255)aCGGTGCATGATGCGGATTCCAGGAATCAACGTACAGCGTCGGGCTAAACCAGAACCAGCCAATAATg > 1:3006754/1‑68 (MQ=255) atgCGGATTCCAGGAATCAACGTACAGCGTCGGGCTAAACCAGAACCAGCCAATAATGCACAGACcgac > 1:7307/1‑69 (MQ=255) aTTCCAGGAATCAACGTAAAGTGTCGGGCTAAACCAGAACCAGCCGATAATGCACAGGcct > 1:535071/1‑60 (MQ=255) aTTCCAGGAATCAACGTAAAGTGTCGGGCTAAACCAGAACCAGCCGATAATGCACAGGcct > 1:2478896/1‑60 (MQ=255) aTTCCAGGAATCAACGTAAAGTGTCGGGCTAAACCAGAACCAGCCGATAATGCACAGGcct > 1:2498096/1‑60 (MQ=255) aTTCCAGGAATCAACGTAAAGTGTCGGGCTAAACCAGAACCAGCCGATAATGCACAGGcct > 1:2754060/1‑60 (MQ=255) aTTCCAGGAATCAACGTAAAGTGTCGGGCTAAACCAGAACCAGCCGATAATGCACAGGcct > 1:1846200/1‑60 (MQ=255) aTTCCAGGAATCAACGTAAAGTGTCGGGCTAAACCAGAACCAGCCGATAATGCACAGGcct > 1:1123511/1‑60 (MQ=255) aTTCCAGGAATCAACGTAAAGTGTCGGGCTAAACCAGAACCAGCCGATAATGCACAGGcct > 1:1192740/1‑60 (MQ=255) aTTCCAGGAATCAACGTAAAGTGTCGGGCTAAACCAGAACCAGCCGATAATGCACAGGcct > 1:3166485/1‑60 (MQ=255) aTTCCAGGAATCAACGTAAAGTGTCGGGCTAAACCAGAACCAGCCGATAATGCACAGGcct > 1:3237410/1‑60 (MQ=255) aTTCCAGGAATCAACGTAAAGTGTCGGGCTAAACCAGAACCAGCCGATAATGCACAGGcct > 1:3340269/1‑60 (MQ=255) aTTCCAGGAATCAACGTAAAGTGTCGGGCTAAACCAGAACCAGCCGATAATGCACAGGcct > 1:3393584/1‑60 (MQ=255) aTTCCAGGAATCAACGTAAAGTGTCGGGCTAAACCAGAACCAGCCGATAATGCACAGGcct > 1:1252801/1‑60 (MQ=255) aTTCCAGGAATCAACGTAAAGTGTAGGGCTAAACCAGAACCAGCCGATAATGCACAGGcct > 1:2800480/1‑60 (MQ=255) ccAGGAATCAACGTACAGCGTCGGGCTAAACCAGAACCAGCCAATAATGCACAGACCGACGACCGGaat < 1:1453806/69‑1 (MQ=255) ccAGGAATCAACGTACAGCGTCGGGCTAAACCAGAACCAGCCAATAATGCACAGACCGACGACCGGaat > 1:3101177/1‑69 (MQ=255) ccAGGAATCAACGTACAGCGTCGGGCTAAACCAGAACCAGCCAATAATGCACAGACCGACGACCGGaat < 1:1237639/69‑1 (MQ=255) ccAGGAATCAACGTACAGCGTCGGGCTAAACCAGAACCAGCCAATAATGCACAGACCGACGACCGGaat < 1:1969284/69‑1 (MQ=255) cAGGAATCAACGTAAAGTGTCGGGCTAAACCAGAACCAGCCGATAATg > 1:606375/1‑48 (MQ=255) cAGGAATCAACGTAAAGTGTCGGGCTAAACCAGAACCAGCCGATAATGCACAGGCCTACCACCGGaata > 1:3001096/1‑69 (MQ=255) cAGGAATCAACGTAAAGTGTCGGGCTAAACCAGAACCAGCCGATAATGCACAGGCCTACCACCGGaata > 1:3209070/1‑69 (MQ=255) cAGGAATCAACGTAAAGTGTCGGGCTAAACCAGAACCAGCCGATAATGCACAGGCCTACCACCGGaata > 1:2779645/1‑69 (MQ=255) cAGGAATCAACGTAAAGTGTCGGGCTAAACCAGAACCAGCCGATAATGCACAGGCCTACCACCGGaata > 1:2264645/1‑69 (MQ=255) cAGGAATCAACGTAAAGTGTCGGGCTAAACCAGAACCAGCCGATAATGCACAGGCCTACCACCGGaata > 1:1069910/1‑69 (MQ=255) cAGGAATCAACGTAAAGTGTCGGGCTAAACCAGAACCAGCCGATAATGCACAGGCCTACCACCGGaata > 1:1499974/1‑69 (MQ=255) cAGGAATCAACGTAAAGTGTCGGGCTAAACCAGAACCAGCCGATAATGCACAGGCCTACCACCGGaata > 1:1454413/1‑69 (MQ=255) cAGGAATCAACGTAAAGTGTCGGGCTAAACCAGAACCAGCCGATAATGCACAGGCCTACCACCGGaata > 1:1380532/1‑69 (MQ=255) cAGGAATCAACGTAAAGTGTCGGGCTAAACCAGAACCAGCCGATAATGCACAGGCCTACCACCGGaata > 1:1940286/1‑69 (MQ=255) cAGGAATCAACGTAAAGTGTCGGGCTAAACCAGAACCAGCCGATAATGCACAGGCCTACCACCGGaata > 1:196640/1‑69 (MQ=255) cAGGAATCAACGTAAAGTGTCGGGCTAAACCAGAACCAGCCGATAATGCACAGGCCTACCACCGGaata > 1:1097818/1‑69 (MQ=255) cAGGAATCAACGTAAAGTGTCGGGCTAAACCAGAACCAGCCGATAATGCACAGGCCTACCACCGGaat > 1:942764/1‑68 (MQ=255) cAGGAATCAACGTAAAGTGTCGGGCTAAACCAGAACCAGCCGATAATGCACAGGCCTACCACCGGaat > 1:2189682/1‑68 (MQ=255) cAGGAATCAACGTAAAGTGTCGGGCTAAACCAGAACCAGCCGATAATGCACAGGCCTACCACCGGaa > 1:574001/1‑67 (MQ=255) gAATCAACGTAAAGTGTCGGGCTAAACCAGAACCAGCCgataat > 1:518655/1‑44 (MQ=255) gAATCAACGTAAAGTGTCGGGCTAAACCAGAACCAGCCgataat > 1:869728/1‑44 (MQ=255) gAATCAACGTAAAGTGTCGGGCTAAACCAGAACCAGCCgataat > 1:49383/1‑44 (MQ=255) gAATCAACGTAAAGTGTCGGGCTAAACCAGAACCAGCCgataat > 1:1340280/1‑44 (MQ=255) gAATCAACGTAAAGTGTCGGGCTAAACCAGAACCAGCCgataat > 1:1375092/1‑44 (MQ=255) gAATCAACGTAAAGTGTCGGGCTAAACCAGAACCAGCCgataat > 1:1399934/1‑44 (MQ=255) gAATCAACGTAAAGTGTCGGGCTAAACCAGAACCAGCCgataat > 1:902898/1‑44 (MQ=255) gAATCAACGTAAAGTGTCGGGCTAAACCAGAACCAGCCgataat > 1:1487890/1‑44 (MQ=255) gAATCAACGTAAAGTGTCGGGCTAAACCAGAACCAGCCgataat > 1:2895768/1‑44 (MQ=255) gAATCAACGTAAAGTGTCGGGCTAAACCAGAACCAGCCgataat > 1:1559692/1‑44 (MQ=255) gAATCAACGTAAAGTGTCGGGCTAAACCAGAACCAGCCgataat > 1:2185519/1‑44 (MQ=255) gAATCAACGTAAAGTGTCGGGCTAAACCAGAACCAGCCgataat > 1:175374/1‑44 (MQ=255) gAATCAACGTAAAGTGTCGGGCTAAACCAGAACCAGCCgataat > 1:1847588/1‑44 (MQ=255) gAATCAACGTAAAGTGTCGGGCTAAACCAGAACCAGCCgataat > 1:2735355/1‑44 (MQ=255) gAATCAACGTAAAGTGTCGGGCTAAACCAGAACCAGCCgataat > 1:2458604/1‑44 (MQ=255) gAATCAACGTAAAGTGTCGGGCTAAACCAGAACCAGCCgataat > 1:2470965/1‑44 (MQ=255) gAATCAACGTAAAGTGTCGGGCTAAACCAGAACCAGCCgataa > 1:3230618/1‑43 (MQ=255) gAATCAACGTAAAGTGTCGGGCTAAACCAGAACCAGCCgat > 1:3069794/1‑41 (MQ=255) aaCGTACAGCGTCGGGCTAAACCAGAACCAGCCAATAATGCACAGACCGACGACCGGAATAATGAccc > 1:3325297/1‑68 (MQ=255) cGTACAGCGTCGGGCTAAACCAGAACCAGCCAATAATGCACAGATCGACGACCGGAATAATGAccccc < 1:1342493/68‑1 (MQ=255) tgTCGGGCTAAACCAGAACCAGCCGATAATGCACAGGCCTACCACCGGAATAATGACCCCCCACACGGt < 1:2153518/68‑1 (MQ=255) tgTCGGGCTAAACCAGAACCAGCCGATAATGCACAGGCCTACCACCGGAATAATGACCCCCCACACGGt < 1:2222550/68‑1 (MQ=255) tgTCGGGCTAAACCAGAACCAGCCGATAATGCACAGGCCTACCACCGGAATAATGACCCCCCACACGGt < 1:1044461/68‑1 (MQ=255) tgTCGGGCTAAACCAGAACCAGCCGATAATGCACAGGCCTACCACCGGAATAATGACCCCCCACACGGt < 1:1878285/68‑1 (MQ=255) tgTCGGGCTAAACCAGAACCAGCCGATAATGCACAGGCCTACCACCGGAATAATGACCCCCCACACGGt < 1:2626151/68‑1 (MQ=255) tgTCGGGCTAAACCAGAACCAGCCGATAATGCACAGGCCTACCACCGGAATAATGACCCCCCACACGGt < 1:1771044/68‑1 (MQ=255) tgTCGGGCTAAACCAGAACCAGCCGATAATGCACAGGCCTACCACCGGAATAATGACCCCCCACACGGt < 1:3157311/68‑1 (MQ=255) tgTCGGGCTAAACCAGAACCAGCCGATAATGCACAGGCCTACCACCGGAATAATGACCCCCCACACGGt < 1:2042939/68‑1 (MQ=255) aaaCCAGAACCAGCCAATAATGCACAGACCGACGACCGGAATAATGACCCCCCACACGGTAATGCTACt < 1:2475284/69‑1 (MQ=255) aaaCCAGAACCAGCCAATAATGCACAGACCGACGACCGGAATAATGACCCCCCACACGGTAATGCTACt < 1:1295316/69‑1 (MQ=255) aaaCCAGAACCAGCCAATAATGCACAGACCGACGACCGGAATAATGACCCCCCACACGGTAATGCTACt < 1:1563941/69‑1 (MQ=255) | ACGGTGCATGATGCGGATTCCAGGAATCAACGTACAGCGTCGGGCTAAACCAGAACCAGCCAATAATGCACAGACCGACGACCGGAATAATGACCCCCCACACGGTAATGCTACT > minE/441005‑441119 |
| Alignment Legend |
|---|
Aligned base mismatch/match (shaded by quality score): ATCG/ATCG < 3 ≤ ATCG/ATCG < 14 ≤ ATCG/ATCG < 32 ≤ ATCG/ATCG < 36 ≤ ATCG/ATCG |
Unaligned base: atcg Masked matching base: atcg Alignment gap: ‑ Deleted base: ‑ |