| Predicted mutation | |||||||
|---|---|---|---|---|---|---|---|
| evidence | seq id | position | mutation | freq | annotation | gene | description |
| RA | minE | 464,263 | C→T | 36.4% | I40I (ATC→ATT) | sdhB → | succinate dehydrogenase, FeS subunit |
| Read alignment evidence... | |||||||||||
|---|---|---|---|---|---|---|---|---|---|---|---|
| seq id | position | ref | new | freq | score (cons/poly) | reads | annotation | genes | product | ||
| * | minE | 464,263 | 0 | C | T | 36.4% | 47.1 / 43.3 | 74 | I40I (ATC→ATT) | sdhB | succinate dehydrogenase, FeS subunit |
| Reads supporting (aligned to +/- strand): ref base C (33/14); new base T (10/17); total (43/31) | |||||||||||
| Fisher's exact test for biased strand distribution p-value = 7.33e-03 | |||||||||||
| Kolmogorov-Smirnov test that lower quality scores support variant p-value = 9.91e-01 | |||||||||||
CGTATGCAGGATTACACCCTGGAAGCGGATGAAGGTCGCGACATGATGCTGCTGGATGCGCTTATCCAGCTAAAAGAGAAAGATCCCAGCCTGTCGTTCCGCCGCTCCTGCCGTGA > minE/464198‑464313 | cgTATGCAGGATTACACCCTGGAAGCGGATGAAGGTCGCGACATGATGCTGCTGGATGCGCTTATcc < 1:2925589/67‑1 (MQ=255) cAGGATTACACCCTGGAAGCGGATGAAGGTCGCGACATGATGCTGCTGGATGCGCTTATCCAGCTaa > 1:974140/1‑67 (MQ=255) cAGGATTACACCCTGGAAGCGGATGAAGGTCGCGACATGATGCTGCTGGATGCGCTTATCCAGCTaa > 1:96890/1‑67 (MQ=255) cAGGATTACACCCTGGAAGCGGATGAAGGTCGCGACATGATGCTGCTGGATGCGCTTATCCAGCTaa > 1:610379/1‑67 (MQ=255) cAGGATTACACCCTGGAAGCGGATGAAGGTCGCGACATGATGCTGCTGGATGCGCTTATCCAGCTaa > 1:431558/1‑67 (MQ=255) cAGGATTACACCCTGGAAGCGGATGAAGGTCGCGACATGATGCTGCTGGATGCGCTTATCCAGCTaa > 1:398070/1‑67 (MQ=255) cAGGATTACACCCTGGAAGCGGATGAAGGTCGCGACATGATGCTGCTGGATGCGCTTATCCAGCTaa > 1:3377841/1‑67 (MQ=255) cAGGATTACACCCTGGAAGCGGATGAAGGTCGCGACATGATGCTGCTGGATGCGCTTATCCAGCTaa > 1:2234041/1‑67 (MQ=255) cAGGATTACACCCTGGAAGCGGATGAAGGTCGCGACATGATGCTGCTGGATGCGCTTATCCAGCTaa > 1:1480450/1‑67 (MQ=255) cAGGATTACACCCTGGAAGCGGATGAAGGTCGCGACATGATGCTGCTGGATGCGCTTATCCAGCTa > 1:1055595/1‑66 (MQ=255) cAGGATTACACCCTGGAAGCGGATGAAGGTCGCGACATGATGCTGCTGGATGCGCTTATCCAGATaa > 1:2544083/1‑67 (MQ=255) cAGGATTACACCCTAGAAGCGGATGAAGGTCGCGACATGATGCTGCTGGATGCGCTTATCCAGCTaa > 1:1262063/1‑67 (MQ=255) ttACACCCTGGAAGCGGATGAAGGTCGCGACATGATGCTGCTGGATGCGCTTATCCAGCTAAAaga > 1:288879/1‑66 (MQ=255) ttACACCCTGGAAGCGGATGAAGGTCGCGACATGATGCTGCTGGATGCGCTTATCCAGCTAAAaga > 1:1650151/1‑66 (MQ=255) ttACACCCTGGAAGCGGATGAAGGTCGCGACATGATGCTGCTGGATGCGCTTATCCAGCTAAAaga > 1:1718589/1‑66 (MQ=255) ttACACCCTGGAAGCGGATGAAGGTCGCGACATGATGCTGCTGGATGCGCTTATCCAGCTAAAaga > 1:3271268/1‑66 (MQ=255) ttACACCCTGGAAGCGGATGAAGGTCGCGACATGATGCTGCTGGATGCGCTTATCCAGCTAAAaga > 1:330986/1‑66 (MQ=255) ttACACCCTGGAAGCGGATGAAGGTCGCGACATGATGCTGCTGGATGCGCTTATCCAGCTAAAaga > 1:2362094/1‑66 (MQ=255) ttACACCCTGGAAGCGGATGAAGGTCGCGACATGATGCTGCTGGATGCGCTTATCCAGCTAAAaga > 1:2349463/1‑66 (MQ=255) acacCCTGGAAGCGGATGAAGGTCGCGACATGATGCTGCTGGATGCGCTTATCCAGCTaa > 1:398401/1‑60 (MQ=255) acacCCTGGAAGCGGATGAAGGTCGCGACATGATGCTGCTGGATGCGCTTATCCAGCTaa > 1:2594964/1‑60 (MQ=255) acacCCTGGAAGCGGATGAAGGTCGCGACATGATGCTGCTGGATGCGCTTATCCAGCTaa > 1:1971804/1‑60 (MQ=255) acacCCTGGAAGCGGATGAAGGTCGCGACATGATGCTGCTGGATGCGCTTATCCAGCTaa > 1:1830372/1‑60 (MQ=255) acacCCTGGAAGCGGATGAAGGTCGCGACATGATGCTGCTGGATGCGCTTATCCAGCTaa > 1:1746848/1‑60 (MQ=255) cccTGGAAGCGGAAGAAGGTCGCGACATGATGCTGCTGGATGCGCTTATTCAGCTGAAAGAGGAAGAt > 1:3375203/1‑68 (MQ=255) cccTGGAAGCGGAAGAAGGTCGCGACATGATGCTGCTGGATGCGCTTATTCAGCTGAAAGAGAAAGAt > 1:840843/1‑68 (MQ=255) cccTGGAAGCGGAAGAAGGTCGCGACATGATGCTGCTGGATGCGCTTATTCAGCTGAAAGAGAAAGAt > 1:2165846/1‑68 (MQ=255) cccTGGAAGCGGAAGAAGGTCGCGACATGATGCTGCTGGATGCGCTTATTCAGCTGAAAGAGAAAGAt > 1:315961/1‑68 (MQ=255) cccTGGAAGCGGAAGAAGGTCGCGACATGATGCTGCTGGATGCGCTTATTCAGCTGAAAGAGAAAGAt > 1:2192077/1‑68 (MQ=255) cccTGGAAGCGGAAGAAGGTCGCGACATGATGCTGCTGGATGCGCTTATTCAGCTGAAAGAGAAAGAt > 1:3191684/1‑68 (MQ=255) cccTGGAAGCGGAAGAAGGTCGCGACATGATGCTGCTGGATGCGCTTATTCAGCTGAAAGAGAAAGAt > 1:872885/1‑68 (MQ=255) cccTGGAAGCGGAAGAAGGTCGCGACATGATGCTGCTGGATGCGCTTATTCAGCTGAAAGAGAAAGAt > 1:959612/1‑68 (MQ=255) cccTGGAAGCGGAAGAAGGTCGCGACATGATGCTGCTGGATGCGCTTATTCAGATGAAAGAGAAAGAt > 1:1921481/1‑68 (MQ=255) cccTGCAAGCGGAAGAAGGTCGCGACATGATGCTGCTGGATGCGCTTATTCAGCTGAAAGAGAAAGAt > 1:2239057/1‑68 (MQ=255) aGCGGAAGATGGTCGCGACATGATGCTGCTGGATGCGCTTATTCAGCTGAAAGTGAAAGATCCCAGc < 1:3390465/67‑1 (MQ=255) aGCGGAAGAAGGTCGCGACATGATGCTGCTGGATGCGCTTATTCAGCTGAAAGAGAAAGATCCCAGc < 1:1037290/67‑1 (MQ=255) aGCGGAAGAAGGTCGCGACATGATGCTGCTGGATGCGCTTATTCAGCTGAAAGAGAAAGATCCCAGc < 1:1097082/67‑1 (MQ=255) aGCGGAAGAAGGTCGCGACATGATGCTGCTGGATGCGCTTATTCAGCTGAAAGAGAAAGATCCCAGc < 1:1157106/67‑1 (MQ=255) aGCGGAAGAAGGTCGCGACATGATGCTGCTGGATGCGCTTATTCAGCTGAAAGAGAAAGATCCCAGc < 1:1570583/67‑1 (MQ=255) aGCGGAAGAAGGTCGCGACATGATGCTGCTGGATGCGCTTATTCAGCTGAAAGAGAAAGATCCCAGc < 1:769529/67‑1 (MQ=255) aGCGGAAGAAGGTCGCGACATGATGCTGCTGGATGCGCTTATTCAGCTGAAAGAGAAAGATCCCAGc < 1:81480/67‑1 (MQ=255) aGCGGAAGAAGGTCGCGACATGATGCTGCTGGATGCGCTTATTCAGCTGAAAGAGAAAGATCCCAGc < 1:1493266/67‑1 (MQ=255) aGCGGAAGAAGGTCGCGACATGATGCTGCTGGATGCGCTTATTCAGCTGAAAGAGAAAGATCCCAGc < 1:1756769/67‑1 (MQ=255) aGCGGAAGAAGGTCGCGACATGATGCTGCTGGATGCGCTTATTCAGCTGAAAGAGAAAGATCCCAGc < 1:2874834/67‑1 (MQ=255) aGCGGAAGAAGGTCGCGACATGATGCTGCTGGATGCGCTTATTCAGCTGAAAGAGAAAGATCCCAGc < 1:2825482/67‑1 (MQ=255) aGCGGAAGAAGGTCGCGACATGATGCTGCTGGATGCGCTTATTCAGCTGAAAGAGAAAGATCCCAGc < 1:2799478/67‑1 (MQ=255) aGCGGAAGAAGGTCGCGACATGATGCTGCTGGATGCGCTTATTCAGCTGAAAGAGAAAGATCCCAGc < 1:2099582/67‑1 (MQ=255) aGCGGAAGAAGGTCGCGACATGATGCTGCTGGATGCGCTTATTCAGCTGAAAGAGAAAGATCCCAGc < 1:2226435/67‑1 (MQ=255) aGCGGAAGAAGGTCGCGACATGATGCTGCTGGATGCGCTTATTCAGCTGAAAGAGAAAGATCCCAGc < 1:2154083/67‑1 (MQ=255) gCGGAAGAAGGTCGCGACATGATGCTGCTGGATGCGCTTATTCAGCTGAAAGAGAAAGATCCCAGc < 1:342497/66‑1 (MQ=255) cGGAAGAAGGTCGCGACATGATGCTGCTGGATGCGCTTATTCAGCTGAAAGAGAAAGATCCCAGc < 1:839980/65‑1 (MQ=255) aGGTCGCGACATGATGCTGCTGGATGCGCTTATCCAGCTAAAAGAGAAAGATCCCAGCCTGTCGTTccg > 1:49810/1‑69 (MQ=255) aGGTCGCGACATGATGCTGCTGGATGCGCTTATCCAGCTAAAAGAGAAAGATCCCAGCCTGTCGTTccg > 1:709383/1‑69 (MQ=255) aGGTCGCGACATGATGCTGCTGGATGCGCTTATCCAGCTAAAAGAGAAAGATCCCAGCCTGTCGTTccg > 1:2107991/1‑69 (MQ=255) aGGTCGCGACATGATGCTGCTGGATGCGCTTATCCAGCTAAAAGAGAAAGATCCCAGCCTGTCGTTccg > 1:3369704/1‑69 (MQ=255) aGGTCGCGACATGATGCTGCTGGATGCGCTTATCCAGCTAAAAGAGAAAGATCCCAGCCTGTCGTTccg > 1:2436739/1‑69 (MQ=255) atgatgCTGCTGGATGCGCTTATCCAGCTAAAAGAGAAAGATCCCAGCCTGTCGTTCCGCCGCTCCTGc < 1:791994/69‑1 (MQ=255) atgatgCTGCTGGATGCGCTTATCCAGCTAAAAGAGAAAGATCCCAGCCTGTCGTTCCGCCGCTCCTGc < 1:60508/69‑1 (MQ=255) atgatgCTGCTGGATGCGCTTATCCAGCTAAAAGAGAAAGATCCCAGCCTGTCGTTCCGCCGCTCCTGc < 1:946886/69‑1 (MQ=255) atgatgCTGCTGGATGCGCTTATCCAGCTAAAAGAGAAAGATCCCAGCCTGTCGTTCCGCCGCTCCTGc < 1:1145782/69‑1 (MQ=255) atgatgCTGCTGGATGCGCTTATCCAGCTAAAAGAGAAAGATCCCAGCCTGTCGTTCCGCCGCTCCTGc < 1:558553/69‑1 (MQ=255) atgatgCTGCTGGATGCGCTTATCCAGCTAAAAGAGAAAGATCCCAGCCTGTCGTTCCGCCGCTCCTGc < 1:1458258/69‑1 (MQ=255) atgatgCTGCTGGATGCGCTTATCCAGCTAAAAGAGAAAGATCCCAGCCTGTCGTTCCGCCGCTCCTGc < 1:2347163/69‑1 (MQ=255) atgatgCTGCTGGATGCGCTTATCCAGCTAAAAGAGAAAGATCCCAGCCTGTCGTTCCGCCGCTCCTGc < 1:3319099/69‑1 (MQ=255) atgatgCTGCTGGATGCGCTTATCCAGCTAAAAGAGAAAGATCCCAGCCTGTCGTTCCGCCGCTCCTGc < 1:3003922/69‑1 (MQ=255) tgatgCTGCTGGATGCGCTTATCCAGCTAAAAGAGAAAGATCCCAGCCTGTCGTTCCGCCGCTCCTGc < 1:2516886/68‑1 (MQ=255) atgCTGCTGGATGCGCTTATCCAGCTAAAAGAGAAAGATCCCAGCCTGTCGTTCCGCCGCTCCTGCCg > 1:1161396/1‑68 (MQ=255) atgCTGCTGGATGCGCTTATCCAGCTAAAAGAGAAAGATCCCAGCCTGTCGTTCCGCCGCTCCTGCCg > 1:2080452/1‑68 (MQ=255) gctgctGGATGCGCTTATCCAGCTAAAAGAGAAAGATCCCAGCCTGTCGTTCCGCCGCTCCTGCCGTg < 1:3383054/68‑1 (MQ=255) gctgctGGATGCGCTTATCCAGCTAAAAGAGAAAGATCCCAGCCTGTCGTTCCGCCGCTCCTGCCGTGa > 1:1107433/1‑69 (MQ=255) gctgctGGATGCGCTTATCCAGCTAAAAGAGAAAGATCCCAGCCTGTCGTTCCGCCGCTCCTGCCGTGa > 1:3041074/1‑69 (MQ=255) gctgctGGATGCGCTTATCCAGCTAAAAGAGAAAGATCCCAGCCTGTCGTTCCGCCGCTCCTGCCGTGa > 1:1625766/1‑69 (MQ=255) gcgcTTATCCAGCTAAAAGAGAAAGATCCCAGCCTGTCGTTCCGCCGCTCCTGCCGTg < 1:578626/58‑1 (MQ=255) gcgcTTATCCAGCTAAAAGAGAAAGATCCCAGCCTGTCGTTCCGCCGCTCCTGCCGTg < 1:2189278/58‑1 (MQ=255) cTTATCCAGCTAAAAGAGAAAGATCCCAGCCTGTCGTTCCGCCGCTCCAGCCGTg < 1:3127780/55‑1 (MQ=255) | CGTATGCAGGATTACACCCTGGAAGCGGATGAAGGTCGCGACATGATGCTGCTGGATGCGCTTATCCAGCTAAAAGAGAAAGATCCCAGCCTGTCGTTCCGCCGCTCCTGCCGTGA > minE/464198‑464313 |
| Alignment Legend |
|---|
Aligned base mismatch/match (shaded by quality score): ATCG/ATCG < 3 ≤ ATCG/ATCG < 21 ≤ ATCG/ATCG < 32 ≤ ATCG/ATCG < 36 ≤ ATCG/ATCG |
Unaligned base: atcg Masked matching base: atcg Alignment gap: ‑ Deleted base: ‑ |