| Predicted mutation | |||||||
|---|---|---|---|---|---|---|---|
| evidence | seq id | position | mutation | freq | annotation | gene | description |
| RA | minE | 501,984 | T→C | 46.0% | V147V (GTT→GTC) | modA → | molybdate transporter subunit |
| Read alignment evidence... | |||||||||||
|---|---|---|---|---|---|---|---|---|---|---|---|
| seq id | position | ref | new | freq | score (cons/poly) | reads | annotation | genes | product | ||
| * | minE | 501,984 | 0 | T | C | 46.0% | 2.0 / 40.3 | 50 | V147V (GTT→GTC) | modA | molybdate transporter subunit |
| Reads supporting (aligned to +/- strand): ref base T (12/15); new base C (13/10); total (25/25) | |||||||||||
| Fisher's exact test for biased strand distribution p-value = 5.71e-01 | |||||||||||
| Kolmogorov-Smirnov test that lower quality scores support variant p-value = 1.00e+00 | |||||||||||
GACAGCAAAACCAACTGGACTTCACTGCTGAATGGCGGTCGCCTGGCGGTTGGCGATCCGGAACATGTTCCCGCTGGCATTTATGCAAAAGAAGCACTGCAAAAACTGGGCGCATGGGATACGCTCTCTCCGAAAC > minE/501916‑502051 | gACAGCAAAACCAACTGGACTTCACTGCTGAATGGCGGTCGCCTGGCGGTTGGCGATCCGGAACATGtt > 1:2970461/1‑69 (MQ=255)gACAGCAAAACCAACTGGACTTCACTGCTGAATGGCGGTCGCCTGGCGGTTGGCGATCCGGAACATGtt < 1:2088448/69‑1 (MQ=255)gACAGCAAAACCAACTGGACTTCACTGCTGAATGGCGGTCGCCTGGCGGTTGGCGATCCGGAACATGtt > 1:1912252/1‑69 (MQ=255)gACAGCAAAACCAACTGGACTTCACTGCTGAATGGCGGTCGCCTGGCGGTTGGCGATCCGGAACATGtt > 1:2619027/1‑69 (MQ=255)gACAGCAAAACCAACTGGACTTCACTGCTGAATGGCGGTCGCCTGGCGGTTGGCGATCCGGAACATGtt < 1:3420608/69‑1 (MQ=255)gACAGCAAAACCAACTGGACTTCACTGCTGAATGGCGGTCGCCTGGCGGTTGGCGATCCGGAACATGtt > 1:1220561/1‑69 (MQ=255)gACAGCAAAACCAACTGGACTTCACTGCTGAATGGCGGTCGCCTGGCGGTTGGCGATCCGGAACATGtt < 1:121057/69‑1 (MQ=255)gACAGCAAAACCAACTGGACTTCACTGCTGAATGGCGGTCGCCTGGCGGTTGGCGATCCGGAACATGtt > 1:32705/1‑69 (MQ=255)gACAGCAAAACCAACTGGACTTCACTGCTGAATGGCGGTCGCCTGGCGGTTGGCGATCCGGAACATGtt < 1:1079247/69‑1 (MQ=255)gACAGCAAAACCAACTGGACTTCACTGCTGAATGGCGGTCGCCTGGCGGTTGGCGATCCGGAACATGtt < 1:1075403/69‑1 (MQ=255)gACAGCAAAACCAACTGGACTTCACTGCTGAATGGCGGTCGCCTGGCGGTTGGCGATCCGGAACATGtt < 1:115067/69‑1 (MQ=255)gACAGCAAAACCAACTGGACTTCACTGCTGAATGGCGGTCGCCTGGCGGTTGGCGATCCGGAACATGtt < 1:3113121/69‑1 (MQ=255)gACAGCAAAACCAACTGGACTTCACTGCTGAATGGCGGTCGCCTGGCGGTTGGCGATCCGGAACATGtt > 1:1193379/1‑69 (MQ=255) cTGGACTTCACTGCTGAATGGCGGTCGCCTGGCGGTTGGCGAGCCGGAACATGtt < 1:2994035/55‑1 (MQ=255) cgctgctgAATGGCGGTCGCCTCGCGGTTGGTGATCCGGAACATGTCCCTGCTGGCATTTATGCgaa > 1:1681129/3‑67 (MQ=255) cgctgctgAATGGCGGTCGCCTCGCGGTTGGTGATCCGGAACATGTCCCTGCTGGCATTTATGCgaa > 1:215007/3‑67 (MQ=255) cgctgctgAATGGCGGTCGCCTCGCGGTTGGTGATCCGGAACATGTCCCTGCTGGCATTTATGCgaa > 1:485498/3‑67 (MQ=255) cgctgctgAATGGCGGTCGCCTCGCGGTTGGTGATCCGGAACATGTCCCTGCTGGCATTTATGCgaa > 1:3119218/3‑67 (MQ=255) cgctgctgAATGGCGGTCGCCTCGCGGTTGGTGATCCGGAACATGTCCCTGCTGGCATTTATGCgaa > 1:445187/3‑67 (MQ=255) cgctgctgAATGGCGGTCGCCTCGCGGTTGGTGATCCGGAACATGTCCCTGCTGGCATTTATGCgaa > 1:1762549/3‑67 (MQ=255) cgctgctgAATGGCGGTCGCCTCGCGGTTGGTGATCCGGAACATGTCCCTGCTGGCATTTATGCgaa > 1:1730154/3‑67 (MQ=255) cgctgctgAATGGCGGTCGCCTCGCGGTTGGTGATCCGGAACATGTCCCTGCTGGCATTTATGCgaa > 1:1721745/3‑67 (MQ=255) cgctgctgAATGGCGGTCGCCTCGCGGTTGGTGATCCGGAACATGTCCCTGCTGGCATTTATGCgaa > 1:2715456/3‑67 (MQ=255) cgctgctgAATGGCGGTCGCCTCGCGGTTGGTGATCCGGAACATGTCCCTGCTGGCATTTATGCgaa > 1:1109510/3‑67 (MQ=255) cgctgctgAATGGCGGTCGCCTCGCGGTTGGTGATCCGGAACATGTCCCTGCTGGCATTTATGCgaa > 1:2758511/3‑67 (MQ=255) cgctgctgAATGGCGGTCGCCTCGCGGTTGGTGATCCGGAACATGTCCCTGCTGGCATTTATGCgaa > 1:1186386/3‑67 (MQ=255) cgctgctgAAAGGCGGTCGCCTCGCGGTTGGTGATCCGGAACATGTCCCTGCTGGCATTTATGCgaa > 1:1395921/3‑67 (MQ=255) cACTGCTGAATGGCGGTCGCCTGGCGGTTGGCGATCCGGAACATGTTCCCGCTGGCATTTATGCaaa > 1:2756262/1‑67 (MQ=255) cACTGCTGAATGGCGGTCGCCTGGCGGTTGGCGATCCGGAACATGTTCCCGCTGGCATTTATGCaaa > 1:3196363/1‑67 (MQ=255) cACTGCTGAATGGCGGTCGCCTGGCGGTTGGCGATCCGGAACATGTTCCCGCTGGCATTTATGCaaa > 1:1101447/1‑67 (MQ=255) cACTGCTGAATGGCGGTCGCCTGGCGGTTGGCGATCCGGAACATGTTCCCGCTGGCATTTATGCaaa > 1:761543/1‑67 (MQ=255) cACTGCTGAATGGCGGTCGCCTGGCGGTTGGCGATCCGGAACATGTTCCCGCTGGCATTTATGCaaa > 1:1595590/1‑67 (MQ=255) cACTGCTGAATGGCGGTCGCCTGGCGGTTGGCGATCCGGAACATGTTCCCGCTGGCATTTATGCaaa > 1:1699066/1‑67 (MQ=255) cACTGCTGAATGGCGGTCGCCTGGCGGTTGGCGATCCGGAACATGTTCCCGCTGGCATTTATGCaaa > 1:1778036/1‑67 (MQ=255) cACTGCTGAATGGCGGTCGCCTGGCGGTTGGCGATCCGGAACATGTTCCCGCTGGCATTTATGCaaa > 1:604149/1‑67 (MQ=255) aCTGCTGAATGGCGGTCGCCTGGCGGTTGGCGATCCGGAACATGTTCCCGCTGGCATTTATGCAAaaga > 1:2077611/1‑69 (MQ=255) aCTGCTGAATGGCGGTCGCCTGGCGGTTGGCGATCCGGAACATGTTCCCGCTGGCATTTATGCAAaaga > 1:1885744/1‑69 (MQ=255) aCTGCTGAATGGCGGTCGCCTGGCGGTTGGCGATCCGGAACATGTTCCCGCTGGCATTTATGCAAaaga > 1:150431/1‑69 (MQ=255) aCTGCTGAATGGCGGTCGCCTGGCGGTTGGCGATCCGGAACATGTTCCCGCTGGCATTTATGCAAaaga > 1:1622763/1‑69 (MQ=255) tgctgAATGGCGGTCGCCTGGCGGTTGGCGATCCGGAACATGTTCCCGCTGGCATTTATGCAAaagaag < 1:281908/69‑1 (MQ=255) tgctgAATGGCGGTCGCCTGGCGGTTGGCGATCCGGAACATGTTCCCGCTGGCATTTATGCAAaagaag < 1:2418655/69‑1 (MQ=255) tgctgAATGGCGGTCGCCTGGCGGTTGGCGATCCGGAACATGTTCCCGCTGGCATTTATGCAAaagaac < 1:379301/69‑2 (MQ=255) tgctgAATGGCGGTCGCCTCGCGGTTGGTGATCCGGAACATGTCCCTTCTGGCATTTATGCGAaagaag < 1:2386204/69‑1 (MQ=255) tgctgAATGGCGGTCGCCTCGCGGTTGGTGATCCGGAACATGTCCCTGCTGGCATTTATGCGAaagaag < 1:2568018/69‑1 (MQ=255) tgctgAATGGCGGTCGCCTCGCGGTTGGTGATCCGGAACATGTCCCTGCTGGCATTTATGCGAaagaag < 1:2532615/69‑1 (MQ=255) tgctgAATGGCGGTCGCCTCGCGGTTGGTGATCCGGAACATGTCCCTGCTGGCATTTATGCGAaagaag < 1:2451247/69‑1 (MQ=255) tgctgAATGGCGGTCGCCTCGCGGTTGGTGATCCGGAACATGTCCCTGCTGGCATTTATGCGAaagaag < 1:2347321/69‑1 (MQ=255) tgctgAATGGCGGTCGCCTCGCGGTTGGTGATCCGGAACATGTCCCTGCTGGCATTTATGCGAaagaag < 1:1232763/69‑1 (MQ=255) tgctgAATGGCGGTCGCCTCGCGGTTGGTGATCCGGAACATGTCCCTGCTGGCATTTATGCGAaagaag < 1:1205917/69‑1 (MQ=255) tgctgAATGGCGGTCGCCTCGCGGTTGGTGATCCGGAACATGTCCCTGCTGGCATTTATGCGAaagaag < 1:1105023/69‑1 (MQ=255) tgctgAATGGCGGTCGCCTCGCGGTTGGTGATCCGGAACATGTCCCTGCTGGCATTTATGCGAaagaag < 1:1976817/69‑1 (MQ=255) tgcagAATGGCGGTCGCCTCGCGGTTGGTGATCCGGAACATGTCCCTGCTGGCATTTATGCGAaagaag < 1:261820/69‑1 (MQ=255) gctgTCGCCTGGCGGTTGGCGATCCGGAACATGTTCCCGCTGGCATTTATGCAAAAGAAGCACTGCaaa < 1:3384187/66‑1 (MQ=255) gCGGTCGCCTGGCGGTTGGCGATCCGGAACATGTTCCCGCTGGCATTTATGCAAAAGAAGCACTGCaaa < 1:915316/69‑1 (MQ=255) gCGGTCGCCTGGCGGTTGGCGATCCGGAACATGTTCCCGCTGGCATTTATGCAAAAGAAGCACTGCaaa < 1:2247919/69‑1 (MQ=255) gCGGTCGCCTGGCGGTTGGCGATCCGGAACATGTTCCCGCTGGCATTTATGCAAAAGAAGCACTGCaaa < 1:1167438/69‑1 (MQ=255) tGGCGATCCGGAACATGTTCCCGCTGGCATTTATGCAAAAGAAGCACTGCAAAAACTGGGCGCATGGGa < 1:3024011/69‑1 (MQ=255) tCCGGAACATGTTCCCGCTGGCATTTATGCAAAATAAGCACTGCAAAAACTGGGCGCATGGGATACGct < 1:1479826/69‑1 (MQ=255) tCCGGAACATGTTCCCGCTGGCATTTATGCAAAAGAAGCACTGCAAAAACTGGGCGCATGGGATACGct < 1:3119461/69‑1 (MQ=255) tCCGGAACATGTTCCCGCTGGCATTTATGCAAAAGAAGCACTGCAAAAACTGGGCGCATGGGATACGct < 1:3199469/69‑1 (MQ=255) tCCGGAACATGTTCCCGCTGGCATTTATGCAAAAGAAGCACTGCAAAAACTGGGCGCATGGGATACGct < 1:2744315/69‑1 (MQ=255) tCCGGAACATGTTCCCGCTGGCATTTATGCAAAAGAAGCACTGCAAAAACTGGGCGCATGGGATACGct < 1:2361496/69‑1 (MQ=255) tCCGGAACATGTTCCCGCTGGCATTTATGCAAAAGAAGCACTGCAAAAACTGGGCGCATGGGATACGct < 1:911842/69‑1 (MQ=255) ccGGAACATGTTCCCGCTGGCATTTATGCAAAAGAAGCACTGCAAAAACTGGGCGCATGGGATACGct < 1:3373481/68‑1 (MQ=255) ttCCCGCTGGCATTTATGCAAATGAAGCACTGCAAAAACTGGGCGCATGGGATACGCTCTCTCCGAAAc > 1:2774709/1‑69 (MQ=255) ttCCCGCTGGCATTTATGCAAAAGAAGCACTGCAAAAACTGGGCGCATGGGATACGCTCTCTCCGAAAc > 1:2117815/1‑69 (MQ=255) ttCCCGCTGGCATTTATACAAAAGAAGCACTGCAAAAACTGGGCGCATGGGATACGCTCTCTCCGAAAc > 1:2630307/1‑69 (MQ=255) | GACAGCAAAACCAACTGGACTTCACTGCTGAATGGCGGTCGCCTGGCGGTTGGCGATCCGGAACATGTTCCCGCTGGCATTTATGCAAAAGAAGCACTGCAAAAACTGGGCGCATGGGATACGCTCTCTCCGAAAC > minE/501916‑502051 |
| Alignment Legend |
|---|
Aligned base mismatch/match (shaded by quality score): ATCG/ATCG < 3 ≤ ATCG/ATCG < 14 ≤ ATCG/ATCG < 32 ≤ ATCG/ATCG < 36 ≤ ATCG/ATCG |
Unaligned base: atcg Masked matching base: atcg Alignment gap: ‑ Deleted base: ‑ |