| Predicted mutation | |||||||
|---|---|---|---|---|---|---|---|
| evidence | seq id | position | mutation | freq | annotation | gene | description |
| RA | minE | 501,987 | C→T | 43.3% | P148P (CCC→CCT) | modA → | molybdate transporter subunit |
| Read alignment evidence... | |||||||||||
|---|---|---|---|---|---|---|---|---|---|---|---|
| seq id | position | ref | new | freq | score (cons/poly) | reads | annotation | genes | product | ||
| * | minE | 501,987 | 0 | C | T | 43.3% | 14.6 / 37.8 | 53 | P148P (CCC→CCT) | modA | molybdate transporter subunit |
| Reads supporting (aligned to +/- strand): ref base C (15/15); new base T (13/10); total (28/25) | |||||||||||
| Fisher's exact test for biased strand distribution p-value = 7.82e-01 | |||||||||||
| Kolmogorov-Smirnov test that lower quality scores support variant p-value = 6.17e-01 | |||||||||||
CACTGCTGAATGGCGGTCGCCTGGCGGTTGGCGATCCGGAACATGTTCCCGCTGGCATTTATGCAAAAGAAGCACTGCAAAAACTGGGCGCATGGGATACGCTCTCTCCGAAAC > minE/501938‑502051 | cgctgctgAATGGCGGTCGCCTCGCGGTTGGTGATCCGGAACATGTCCCTGCTGGCATTTATGCgaa > 1:1730154/3‑67 (MQ=255)cgctgctgAATGGCGGTCGCCTCGCGGTTGGTGATCCGGAACATGTCCCTGCTGGCATTTATGCgaa > 1:2715456/3‑67 (MQ=255)cgctgctgAATGGCGGTCGCCTCGCGGTTGGTGATCCGGAACATGTCCCTGCTGGCATTTATGCgaa > 1:2758511/3‑67 (MQ=255)cgctgctgAATGGCGGTCGCCTCGCGGTTGGTGATCCGGAACATGTCCCTGCTGGCATTTATGCgaa > 1:3119218/3‑67 (MQ=255)cgctgctgAATGGCGGTCGCCTCGCGGTTGGTGATCCGGAACATGTCCCTGCTGGCATTTATGCgaa > 1:215007/3‑67 (MQ=255)cgctgctgAATGGCGGTCGCCTCGCGGTTGGTGATCCGGAACATGTCCCTGCTGGCATTTATGCgaa > 1:1762549/3‑67 (MQ=255)cgctgctgAATGGCGGTCGCCTCGCGGTTGGTGATCCGGAACATGTCCCTGCTGGCATTTATGCgaa > 1:1721745/3‑67 (MQ=255)cgctgctgAATGGCGGTCGCCTCGCGGTTGGTGATCCGGAACATGTCCCTGCTGGCATTTATGCgaa > 1:1681129/3‑67 (MQ=255)cgctgctgAATGGCGGTCGCCTCGCGGTTGGTGATCCGGAACATGTCCCTGCTGGCATTTATGCgaa > 1:445187/3‑67 (MQ=255)cgctgctgAATGGCGGTCGCCTCGCGGTTGGTGATCCGGAACATGTCCCTGCTGGCATTTATGCgaa > 1:485498/3‑67 (MQ=255)cgctgctgAATGGCGGTCGCCTCGCGGTTGGTGATCCGGAACATGTCCCTGCTGGCATTTATGCgaa > 1:1109510/3‑67 (MQ=255)cgctgctgAATGGCGGTCGCCTCGCGGTTGGTGATCCGGAACATGTCCCTGCTGGCATTTATGCgaa > 1:1186386/3‑67 (MQ=255)cgctgctgAAAGGCGGTCGCCTCGCGGTTGGTGATCCGGAACATGTCCCTGCTGGCATTTATGCgaa > 1:1395921/3‑67 (MQ=255)cACTGCTGAATGGCGGTCGCCTGGCGGTTGGCGATCCGGAACATGTTCCCGCTGGCATTTATGCaaa > 1:1595590/1‑67 (MQ=255)cACTGCTGAATGGCGGTCGCCTGGCGGTTGGCGATCCGGAACATGTTCCCGCTGGCATTTATGCaaa > 1:1101447/1‑67 (MQ=255)cACTGCTGAATGGCGGTCGCCTGGCGGTTGGCGATCCGGAACATGTTCCCGCTGGCATTTATGCaaa > 1:1699066/1‑67 (MQ=255)cACTGCTGAATGGCGGTCGCCTGGCGGTTGGCGATCCGGAACATGTTCCCGCTGGCATTTATGCaaa > 1:2756262/1‑67 (MQ=255)cACTGCTGAATGGCGGTCGCCTGGCGGTTGGCGATCCGGAACATGTTCCCGCTGGCATTTATGCaaa > 1:604149/1‑67 (MQ=255)cACTGCTGAATGGCGGTCGCCTGGCGGTTGGCGATCCGGAACATGTTCCCGCTGGCATTTATGCaaa > 1:1778036/1‑67 (MQ=255)cACTGCTGAATGGCGGTCGCCTGGCGGTTGGCGATCCGGAACATGTTCCCGCTGGCATTTATGCaaa > 1:761543/1‑67 (MQ=255)cACTGCTGAATGGCGGTCGCCTGGCGGTTGGCGATCCGGAACATGTTCCCGCTGGCATTTATGCaaa > 1:3196363/1‑67 (MQ=255) aCTGCTGAATGGCGGTCGCCTGGCGGTTGGCGATCCGGAACATGTTCCCGCTGGCATTTATGCAAaaga > 1:150431/1‑69 (MQ=255) aCTGCTGAATGGCGGTCGCCTGGCGGTTGGCGATCCGGAACATGTTCCCGCTGGCATTTATGCAAaaga > 1:2077611/1‑69 (MQ=255) aCTGCTGAATGGCGGTCGCCTGGCGGTTGGCGATCCGGAACATGTTCCCGCTGGCATTTATGCAAaaga > 1:1885744/1‑69 (MQ=255) aCTGCTGAATGGCGGTCGCCTGGCGGTTGGCGATCCGGAACATGTTCCCGCTGGCATTTATGCAAaaga > 1:1622763/1‑69 (MQ=255) tgctgAATGGCGGTCGCCTGGCGGTTGGCGATCCGGAACATGTTCCCGCTGGCATTTATGCAAaagaag < 1:281908/69‑1 (MQ=255) tgctgAATGGCGGTCGCCTGGCGGTTGGCGATCCGGAACATGTTCCCGCTGGCATTTATGCAAaagaag < 1:2418655/69‑1 (MQ=255) tgctgAATGGCGGTCGCCTGGCGGTTGGCGATCCGGAACATGTTCCCGCTGGCATTTATGCAAaagaac < 1:379301/69‑2 (MQ=255) tgctgAATGGCGGTCGCCTCGCGGTTGGTGATCCGGAACATGTCCCTTCTGGCATTTATGCGAaagaag < 1:2386204/69‑1 (MQ=255) tgctgAATGGCGGTCGCCTCGCGGTTGGTGATCCGGAACATGTCCCTGCTGGCATTTATGCGAaagaag < 1:1105023/69‑1 (MQ=255) tgctgAATGGCGGTCGCCTCGCGGTTGGTGATCCGGAACATGTCCCTGCTGGCATTTATGCGAaagaag < 1:2568018/69‑1 (MQ=255) tgctgAATGGCGGTCGCCTCGCGGTTGGTGATCCGGAACATGTCCCTGCTGGCATTTATGCGAaagaag < 1:2532615/69‑1 (MQ=255) tgctgAATGGCGGTCGCCTCGCGGTTGGTGATCCGGAACATGTCCCTGCTGGCATTTATGCGAaagaag < 1:2451247/69‑1 (MQ=255) tgctgAATGGCGGTCGCCTCGCGGTTGGTGATCCGGAACATGTCCCTGCTGGCATTTATGCGAaagaag < 1:1205917/69‑1 (MQ=255) tgctgAATGGCGGTCGCCTCGCGGTTGGTGATCCGGAACATGTCCCTGCTGGCATTTATGCGAaagaag < 1:1232763/69‑1 (MQ=255) tgctgAATGGCGGTCGCCTCGCGGTTGGTGATCCGGAACATGTCCCTGCTGGCATTTATGCGAaagaag < 1:2347321/69‑1 (MQ=255) tgctgAATGGCGGTCGCCTCGCGGTTGGTGATCCGGAACATGTCCCTGCTGGCATTTATGCGAaagaag < 1:1976817/69‑1 (MQ=255) tgcagAATGGCGGTCGCCTCGCGGTTGGTGATCCGGAACATGTCCCTGCTGGCATTTATGCGAaagaag < 1:261820/69‑1 (MQ=255) gctgTCGCCTGGCGGTTGGCGATCCGGAACATGTTCCCGCTGGCATTTATGCAAAAGAAGCACTGCaaa < 1:3384187/66‑1 (MQ=255) gCGGTCGCCTGGCGGTTGGCGATCCGGAACATGTTCCCGCTGGCATTTATGCAAAAGAAGCACTGCaaa < 1:915316/69‑1 (MQ=255) gCGGTCGCCTGGCGGTTGGCGATCCGGAACATGTTCCCGCTGGCATTTATGCAAAAGAAGCACTGCaaa < 1:1167438/69‑1 (MQ=255) gCGGTCGCCTGGCGGTTGGCGATCCGGAACATGTTCCCGCTGGCATTTATGCAAAAGAAGCACTGCaaa < 1:2247919/69‑1 (MQ=255) tGGCGATCCGGAACATGTTCCCGCTGGCATTTATGCAAAAGAAGCACTGCAAAAACTGGGCGCATGGGa < 1:3024011/69‑1 (MQ=255) tCCGGAACATGTTCCCGCTGGCATTTATGCAAAATAAGCACTGCAAAAACTGGGCGCATGGGATACGct < 1:1479826/69‑1 (MQ=255) tCCGGAACATGTTCCCGCTGGCATTTATGCAAAAGAAGCACTGCAAAAACTGGGCGCATGGGATACGct < 1:3119461/69‑1 (MQ=255) tCCGGAACATGTTCCCGCTGGCATTTATGCAAAAGAAGCACTGCAAAAACTGGGCGCATGGGATACGct < 1:3199469/69‑1 (MQ=255) tCCGGAACATGTTCCCGCTGGCATTTATGCAAAAGAAGCACTGCAAAAACTGGGCGCATGGGATACGct < 1:2361496/69‑1 (MQ=255) tCCGGAACATGTTCCCGCTGGCATTTATGCAAAAGAAGCACTGCAAAAACTGGGCGCATGGGATACGct < 1:2744315/69‑1 (MQ=255) tCCGGAACATGTTCCCGCTGGCATTTATGCAAAAGAAGCACTGCAAAAACTGGGCGCATGGGATACGct < 1:911842/69‑1 (MQ=255) ccGGAACATGTTCCCGCTGGCATTTATGCAAAAGAAGCACTGCAAAAACTGGGCGCATGGGATACGct < 1:3373481/68‑1 (MQ=255) ttCCCGCTGGCATTTATGCAAATGAAGCACTGCAAAAACTGGGCGCATGGGATACGCTCTCTCCGAAAc > 1:2774709/1‑69 (MQ=255) ttCCCGCTGGCATTTATGCAAAAGAAGCACTGCAAAAACTGGGCGCATGGGATACGCTCTCTCCGAAAc > 1:2117815/1‑69 (MQ=255) ttCCCGCTGGCATTTATACAAAAGAAGCACTGCAAAAACTGGGCGCATGGGATACGCTCTCTCCGAAAc > 1:2630307/1‑69 (MQ=255) | CACTGCTGAATGGCGGTCGCCTGGCGGTTGGCGATCCGGAACATGTTCCCGCTGGCATTTATGCAAAAGAAGCACTGCAAAAACTGGGCGCATGGGATACGCTCTCTCCGAAAC > minE/501938‑502051 |
| Alignment Legend |
|---|
Aligned base mismatch/match (shaded by quality score): ATCG/ATCG < 3 ≤ ATCG/ATCG < 14 ≤ ATCG/ATCG < 32 ≤ ATCG/ATCG < 36 ≤ ATCG/ATCG |
Unaligned base: atcg Masked matching base: atcg Alignment gap: ‑ Deleted base: ‑ |