| Predicted mutation | |||||||
|---|---|---|---|---|---|---|---|
| evidence | seq id | position | mutation | freq | annotation | gene | description |
| RA | minE | 504,034 | C→T | 70.1% | Y342Y (TAC→TAT) | modC → | molybdate transporter subunit |
| Read alignment evidence... | |||||||||||
|---|---|---|---|---|---|---|---|---|---|---|---|
| seq id | position | ref | new | freq | score (cons/poly) | reads | annotation | genes | product | ||
| * | minE | 504,034 | 0 | C | T | 70.1% | 73.4 / 36.8 | 80 | Y342Y (TAC→TAT) | modC | molybdate transporter subunit |
| Reads supporting (aligned to +/- strand): ref base C (9/15); new base T (39/17); total (48/32) | |||||||||||
| Fisher's exact test for biased strand distribution p-value = 1.20e-02 | |||||||||||
| Kolmogorov-Smirnov test that lower quality scores support variant p-value = 9.58e-01 | |||||||||||
TATCAGCCCGTGGGCCAGGGATGAACTGGCGATCAAACCTGGCCTGTGGCTGTACGCGCAAATTAAAAGTGTGTCGATAACCGCCTGATTAAATCAGGTGGCTATAAATGAACTGGGCAATGC > minE/503980‑504102 | tATCAGCCCGTGGGCCAGGGATTAACTGGCTATCAAACCTGGCCTGTGGCTGTATGCGCAAATTAAAAg > 1:998861/1‑69 (MQ=255)tATCAGCCCGTGGGCCAGGGATGAACTGGCGATCAAACCTGGCCTGTGGCTGTATGCGCAAATTaaaa > 1:2431730/1‑68 (MQ=255)tATCAGCCCGTGGGCCAGGGATGAACTGGCGATCAAACCTGGCCTGTGGCTGTATGCGCAAATTAAAAg > 1:2523485/1‑69 (MQ=255)tATCAGCCCGTGGGCCAGGGATGAACTGGCGATCAAACCTGGCCTGTGGCTGTATGCGCAAATTAAAAg > 1:700417/1‑69 (MQ=255)tATCAGCCCGTGGGCCAGGGATGAACTGGCGATCAAACCTGGCCTGTGGCTGTATGCGCAAATTAAAAg > 1:498776/1‑69 (MQ=255)tATCAGCCCGTGGGCCAGGGATGAACTGGCGATCAAACCTGGCCTGTGGCTGTATGCGCAAATTAAAAg > 1:2993509/1‑69 (MQ=255)tATCAGCCCGTGGGCCAGGGATGAACTGGCGATCAAACCTGGCCTGTGGCTGTATGCGCAAATTAAAAg > 1:1688043/1‑69 (MQ=255)tATCAGCCCGTGGGCCAGGGATGAACTGGCGATCAAACCTGGCCTGTGGCTGTATGCGCAAATTAAAAg > 1:1548977/1‑69 (MQ=255)tATCAGCCCGTGGGCCAGGGATGAACTGGCGATCAAACCTGGCCTGTGGCTGTATGCGCAAATTAAAAg > 1:143100/1‑69 (MQ=255)tATCAGCCCGTGGGCCAGGGATGAACTGGCGATCAAACCTGGCCTGTGGCTGTATGCGCAAATTAAAAg > 1:1391343/1‑69 (MQ=255)tATCAGCCCGTGGGCCAGGGATGAACTGGCGATCAAACCTGGCCTGTGGCTGTATGCGCAAATTAAAAg > 1:1118009/1‑69 (MQ=255) aGCCCGTGGGCCAGGGATGAACTGGCGATCAAACCTGGCCTGTGGCTGTACGCGCAAATTAAAAgtgtg > 1:3000635/1‑69 (MQ=255) cccGTGGGCCAGGGATGAACTGGCGATCAAACCTGGCCTGTGGCTGTACGCGCAAATTAAAAGTGTGTc < 1:50659/69‑1 (MQ=255) cccGTGGGCCAGGGATGAACTGGCGATCAAACCTGGCCTGTGGCTGTACGCGCAAATTAAAAGTGTGTc < 1:2859924/69‑1 (MQ=255) cccGTGGGCCAGGGATGAACTGGCGATCAAACCTGGCCTGTGGCTGTACGCGCAAATTAAAAGTGTGTc < 1:451842/69‑1 (MQ=255) cccGTGGGCCAGGGATGAACTGGCGATCAAACCTGGCCTGTGGCTGTACGCGCAAATTAAAAGTGTGTc < 1:1187402/69‑1 (MQ=255) cccGTGGGCCAGGGATGAACTGGCGATCAAACCTGGCCTGTGGCTGTACGCGCAAATTAAAAGTGTGTc < 1:2977815/69‑1 (MQ=255) gggATGAACTGGCGATCAAACCTGGCCTGTGTCTGTATGCGCAAATTAAAAGTGTGTCGATAACCGCCt > 1:476987/1‑69 (MQ=255) gggATGAACTGGCGATCAAACCTGGCCTGTGGCTGTATGCGCAAATTAAAAGTGTGTCGATAACCGCCt > 1:2474779/1‑69 (MQ=255) gggATGAACTGGCGATCAAACCTGGCCTGTGGCTGTATGCGCAAATTAAAAGTGTGTCGATAACCGCCt > 1:754001/1‑69 (MQ=255) gggATGAACTGGCGATCAAACCTGGCCTGTGGCTGTATGCGCAAATTAAAAGTGTGTCGATAACCGCCt > 1:1838531/1‑69 (MQ=255) gggATGAACTGGCGATCAAACCTGGCCTGTGGCTGTATGCGCAAATTAAAAGTGTGTCGATAACCGCCt > 1:2684932/1‑69 (MQ=255) gggATGAACTGGCGATCAAACCTGGCCTGTGGCTGTATGCGCAAATTAAAAGTGTGTCGATAACCGCCt > 1:2679441/1‑69 (MQ=255) gggATGAACTGGCGATCAAACCTGGCCTGTGGCTGTATGCGCAAATTAAAAGTGTGTCGATAACCGCCt > 1:2545498/1‑69 (MQ=255) gggATGAACTGGCGATCAAACCTGGCCTGTGGCTGTATGCGCAAATTAAAAGTGTGTCGATAACCGCCt > 1:565089/1‑69 (MQ=255) gggATGAACTGGCGATCAAACCTGGCCTGTGGCTGTATGCGCAAATTAAAAGTGTGTCGATAACCGCCt > 1:2450000/1‑69 (MQ=255) gggATGAACTGGCGATCAAACCTGGCCTGTGGCTGTATGCGCAAATTAAAAGTGTGTCGATAACCGCCt > 1:2393483/1‑69 (MQ=255) gggATGAACTGGCGATCAAACCTGGCCTGTGGCTGTATGCGCAAATTAAAAGTGTGTCGATAACCGCCt > 1:2341866/1‑69 (MQ=255) gggATGAACTGGCGATCAAACCTGGCCTGTGGCTGTATGCGCAAATTAAAAGTGTGTCGATAACCGCCt > 1:2879517/1‑69 (MQ=255) gggATGAACTGGCGATCAAACCTGGCCTGTGGCTGTATGCGCAAATTAAAAGTGTGTCGATAACCGCCt > 1:3127224/1‑69 (MQ=255) gggATGAACTGGCGATCAAACCTGGCCTGTGGCTGTATGCGCAAATTAAAAGTGTGTCGATAACCGCCt > 1:3308276/1‑69 (MQ=255) gggATGAACTGGCGATCAAACCTGGCCTGTGGCTGTATGCGCAAATTAAAAGTGTGTCGATAACCGCCt > 1:399573/1‑69 (MQ=255) gggATGAACTGGCGATCAAACCTGGCCTGTGGCTGTATGCGCAAATTAAAAGTGTGTCGATAACCGCCt > 1:1358077/1‑69 (MQ=255) gggATGAACTGGCGATCAAACCTGGCCTGTGGCTGTATGCGCAAATTAAAAGTCTGTCGATAACCGCCt > 1:1773389/1‑69 (MQ=255) gggATGAACTGGCGATCAAACCTGGCCTGTGGCTGTACGCGCAAATTAAAAGTGTGTc < 1:3143036/58‑1 (MQ=255) gATGAACTGGCGATCAAACCTGGCCTGTGGCTGTACGCGCAAATTAAAAGTGTGTCGATAACCGCCTg > 1:11239/1‑68 (MQ=255) gATGAACTGGCGATCAAACCTGGCCTGTGGCTGTACGCGCAAATTAAAAGTGTGTCGATAACCGCCTg > 1:714100/1‑68 (MQ=255) gATGAACTGGCGATCAAACCTGGCCTGTGGCTGTACGCGCAAATTAAAAGTGTGTCGATAACCGCCTg > 1:2157743/1‑68 (MQ=255) gAACTGGCGATCAAACCTGGCCTGTGGCTGTACGCGCAAATTAAAAGTGTGTCGATAACCGCCTGATTa < 1:1961791/69‑1 (MQ=255) gAACTGGCGATCAAACCTGGCCTGTGGCTGTACGCGCAAATTAAAAGTGTGTCGATAACCGCCTGATTa < 1:168271/69‑1 (MQ=255) gAACTGGCGATCAAACCTGGCCTGTGGCTGTACGCGCAAATTAAAAGTGTGTCGATAACCGCCTGATTa < 1:1970632/69‑1 (MQ=255) gAACTGGCGATCAAACCTGGCCTGTGGCTGTACGCGCAAATTAAAAGTGTGTCGATAACCGCCTGATTa < 1:2013026/69‑1 (MQ=255) aaCTGGCGATCAAACCTGGCCTGTGGCTGTACGCGCAAATTAAAAGTGTGTCGATAACCGCCTGATTaa > 1:2266783/1‑69 (MQ=255) cAAACCTGGCCTGTGGCTGTACGCGCAAATTAAAAGTGTGTCGATAACCGCCTGATTaa > 1:2931790/1‑59 (MQ=255) cAAACCTGGCCTGTGGCTGTACGCGCAAATTAAAAGTGTGTCGATAACCGCCTGATTaa > 1:1599617/1‑59 (MQ=255) cAAACCTGGCCTGTGGCTGTACGCGCAAATTAAAAGTGTGTCGATAACCGCCTGATTaa > 1:655455/1‑59 (MQ=255) cAAACCTGGCCTGTGGCTGTACGCGCAAATTAAAAGTGTGTCGATAACCGCCTGATTaa > 1:2399178/1‑59 (MQ=255) ggCCTGTGGCTGTATGCGCAAATTAAAAGTGTGTc > 1:3084927/1‑35 (MQ=255) ggCCTGTGGCTGTATGCGCAAATTAAAAGTGTGTCGATACCCGCCTGATTAAATCAGGTAGc > 1:1832403/1‑62 (MQ=255) ggCCTGTGGCTGTATGCGCAAATTAAAAGTGTGTCGATAACCGCCTGATTAAATCAGGTAGCTATaaa > 1:769909/1‑68 (MQ=255) ggCCTGTGGCTGTATGCGCAAATTAAAAGTGTGTCGATAACCGCCTGATTAAATCAGGTAGCTATaaa > 1:3007367/1‑68 (MQ=255) ggCCTGTGGCTGTATGCGCAAATTAAAAGTGTGTCGATAACCGCCTGATTAAATCAGGTAGCTATaaa > 1:2625911/1‑68 (MQ=255) ggCCTGTGGCTGTATGCGCAAATTAAAAGTGTGTCGATAACCGCCTGATTAAATCAGGTAGCTATaaa > 1:1097661/1‑68 (MQ=255) ggCCTGTGGCTGTATGCGCAAATTAAAAGTGTGTCGATAACCGCCTGATTAAATCAGGTAGCTATaaa > 1:1578078/1‑68 (MQ=255) ggCCTGTGGCTGTATGCGCAAATTAAAAGTGTGTCGATAACCGCCTGATTAAATCAGGTAGCTATaaa > 1:2742835/1‑68 (MQ=255) ggCCTGTGGCTGTATGCGCAAATTAAAAGTGTGTCGATAACCGCCTGATTAAATCAGGTAGCTATaaa > 1:3407090/1‑68 (MQ=255) ggCCTGTGGCTGTATGCGCAAATTAAAAGTGTGTCGATAACCGCCTGATTAAATCAGGTAGCTATaaa > 1:2900669/1‑68 (MQ=255) ggCCTGTGGCTGTATGCGCAAATTAAAAGTGTGTCGATAACCGCCTGATTAAATCAGGTAGCTATaa > 1:2426430/1‑67 (MQ=255) cTGTGGCTGTACGCGCAAATTAAAAGTGTGTCGATAACCGCCTGATTAAATCAGGTGGCTATAAATg < 1:730289/67‑1 (MQ=255) cTGTGGCTGTACGCGCAAATTAAAAGTGTGTCGATAACCGCCTGATTAAATCAGGTGGCTATAAATg < 1:1750990/67‑1 (MQ=255) tGTATGCGCAAATTAAAAGTGTGTCGATAACCGCCTGATTAAATCAGGTAGCTATAAATGAAGTGGGCa < 1:2193938/69‑1 (MQ=255) tGTATGCGCAAATTAAAAGTGTGTCGATAACCGCCTGATTAAATCAGGTAGCTATAAATGAACTggga < 1:79775/68‑2 (MQ=255) tGTATGCGCAAATTAAAAGTGTGTCGATAACCGCCTGATTAAATCAGGTAGCTATAAATGAACTGGGCa < 1:1521803/69‑1 (MQ=255) tGTATGCGCAAATTAAAAGTGTGTCGATAACCGCCTGATTAAATCAGGTAGCTATAAATGAACTGGGCa < 1:1425753/69‑1 (MQ=255) tGTATGCGCAAATTAAAAGTGTGTCGATAACCGCCTGATTAAATCAGGTAGCTATAAATGAACTGGGCa < 1:677404/69‑1 (MQ=255) tGTATGCGCAAATTAAAAGTGTGTCGATAACCGCCTGATTAAATCAGGTAGCTATAAATGAACTGGGCa < 1:680359/69‑1 (MQ=255) tGTATGCGCAAATTAAAAGTGTGTCGATAACCGCCTGATTAAATCAGGTAGCTATAAATGAACTGGGCa < 1:3260968/69‑1 (MQ=255) tGTATGCGCAAATTAAAAGTGTGTCGATAACCGCCTGATTAAATCAGGTAGCTATAAATGAACTGGGCa < 1:869912/69‑1 (MQ=255) tGTATGCGCAAATTAAAAGTGTGTCGATAACCGCCTGATTAAATCAGGTAGCTATAAATGAACTGGGCa < 1:3226460/69‑1 (MQ=255) tGTATGCGCAAATTAAAAGTGTGTCGATAACCGCCTGATTAAATCAGGTAGCTATAAATGAACTGGGCa < 1:3150022/69‑1 (MQ=255) tGTATGCGCAAATTAAAAGTGTGTCGATAACCGCCTGATTAAATCAGGTAGCTATAAATGAACTGGGCa < 1:924128/69‑1 (MQ=255) tGTATGCGCAAATTAAAAGTGTGTCGATAACCGCCTGATTAAATCAGGTAGCTATAAATGAACTGGGCa < 1:2718810/69‑1 (MQ=255) tGTATGCGCAAATTAAAAGTGTGTCGATAACCGCCTGATTAAATCAGGTAGCTATAAATGAACTGGGCa < 1:1965996/69‑1 (MQ=255) tGTATGCGCAAATTAAAAGTGTGTCGATAACCGCCTGATTAAATCAGGTAGCTATAAATGAACTGGGCa < 1:783028/69‑1 (MQ=255) tGTATGCGCAAATTAAAAGTGTGTCGATAACCGCCTGATTAAATCAGGTAGCTATAAATGAACTGGGCa < 1:2512398/69‑1 (MQ=255) tGTATGCGCAAATTAAAAGTGTGACGATAACCGCCTGATTAAATCAGGTAGCTATAAATGAACTGGGCa < 1:2074594/69‑1 (MQ=255) tGTATGCGCAAATTAAAAGTATGTCGATAACCGCCTGATTAAATCAGGTAGCTATAAATGAACTGGGCa < 1:308231/69‑1 (MQ=255) tGTACGCGCAAATTAAAAGTGTGTCGATAACCGCCTGATTAAATCAGGTGGCTATAAATGAACTGGGc < 1:1656917/68‑1 (MQ=255) tGTACGCGCAAATTAAAAGTGTGTCGATAACCGCCTGATTAAATCAGGTGGCTATAAATGAACTGGGc < 1:1493329/68‑1 (MQ=255) tGTACGCGCAAATTAAAAGGGTGTCGATAACCGCCTGATTAAATCAGGTGGCTATAAATGAACTGGGc < 1:1139105/68‑1 (MQ=255) cgcgCAAATTAAAAGTGTGTCGATAACCGCCTGATTAAATCAGGTGGCTATAAATGAACTGGGCAATGc > 1:1088767/1‑69 (MQ=255) cgcgCAAATTAAAAGTGTGTCGATAACCGCCTGATTAAATCAGGTGGCTATAAATGAACTGGGCAATGc > 1:938763/1‑69 (MQ=255) cgcgCAAATTAAAAGTGTGTCGATAACCGCCTGATTAAATCAGGTGGCTATAAATGAACTGGGCAATGc > 1:777737/1‑69 (MQ=255) cgcgCAAATTAAAAGTGTGTCGATAACCGCCTGATTAAATCAGGTGGCTATAAATGAACTGGGCAATGc > 1:791869/1‑69 (MQ=255) cgcgCAAATTAAAAGTGTGTCGATAACCGCCTGATTAAATCAGGTGGCTATAAATGAACTGGGCAATGc > 1:1365890/1‑69 (MQ=255) cgcgCAAATTAAAAGTGTGTCGATAACCGCCTGATTAAATCAGGTGGCTATAAATGAACTGGGCAATGc > 1:980224/1‑69 (MQ=255) cgcgCAAATTAAAAGTGTGTCGATAACCGCCTGATTAAATCAGGTGGCTATAAATGAACTGGGCAATGc > 1:845355/1‑69 (MQ=255) cgcgCAAATTAAAAGTGTGTCGATAACCGCCTGATTAAATCAGGTGGCTATAAATGAACTGGGCAATGc > 1:56132/1‑69 (MQ=255) cgcgCAAATTAAAAGTGTGTCGATAACCGCCTGATTAAATCAGGTGGCTATAAATGAACTGGGCAATGc > 1:2816304/1‑69 (MQ=255) cgcgCAAATTAAAAGTGTGTCGATAACCGCCTGATTAAATCAGGTGGCTATAAATGAACTGGGCAATGc > 1:1076296/1‑69 (MQ=255) cgcgCAAATTAAAAGTGTGTCGATAACCGCCTGATTAAATCAGGTGGCTATAAATGAACTGGGCAATGc > 1:2245751/1‑69 (MQ=255) cgcgCAAATTAAAAGTGTGTCGATAACCGCCTGATTAAATCAGGTGGCTATAAATGAACTGGGCAATGc > 1:2239018/1‑69 (MQ=255) cgcgCAAATTAAAAGTGTGTCGATAACCGCCTGATTAAATCAGGTGGCTATAAATGAACTGGGCAATGc > 1:2045327/1‑69 (MQ=255) cgcgCAAATTAAAAGTGTGTCGATAACCGCCTGATTAAATCAGGTGGCTATAAATGAACTGGGCAATGc > 1:1942610/1‑69 (MQ=255) cgcgCAAATTAAAAGTGTGTCGATAACCGCCTGATTAAATCAGGTGGCTATAAATGAACTGGGCAATGc > 1:1693942/1‑69 (MQ=255) cgcgCAAATTAAAAGTGTGTCGATAACCGCCTGATTAAATCAGGTGGCTATAAATGAACTGGGCAATGc > 1:1144374/1‑69 (MQ=255) cgcgCAAATTAAAAGTGTGTCGATAACCGCCTGATTAAATCAGGTGGCTATAAATGAACTGGGCAATGc > 1:1657840/1‑69 (MQ=255) cgcgCAAATTAAAAGTGTGTCGATAACCGCCTGATTAAATCAGGTGGCTATAAATGAACTGGGCAATGc > 1:1613608/1‑69 (MQ=255) cgcgCAAATTAAAAGTGTGTCGATAACCGCCTGATTAAATCAGGTGGCTATAAATGAACTGGGCAATGc > 1:1442991/1‑69 (MQ=255) cgcgCAAATTAAAAGTGTGTCGATAACCGCCTGATTAAATCAGGTGGCTATAAATGAACTGGGCAATGc > 1:1406161/1‑69 (MQ=255) | TATCAGCCCGTGGGCCAGGGATGAACTGGCGATCAAACCTGGCCTGTGGCTGTACGCGCAAATTAAAAGTGTGTCGATAACCGCCTGATTAAATCAGGTGGCTATAAATGAACTGGGCAATGC > minE/503980‑504102 |
| Alignment Legend |
|---|
Aligned base mismatch/match (shaded by quality score): ATCG/ATCG < 3 ≤ ATCG/ATCG < 21 ≤ ATCG/ATCG < 32 ≤ ATCG/ATCG < 36 ≤ ATCG/ATCG |
Unaligned base: atcg Masked matching base: atcg Alignment gap: ‑ Deleted base: ‑ |