| Predicted mutation | |||||||
|---|---|---|---|---|---|---|---|
| evidence | seq id | position | mutation | freq | annotation | gene | description |
| RA | minE | 526,368 | C→T | 18.3% | I10I (ATC→ATT) | ybhL → | predicted inner membrane protein |
| Read alignment evidence... | |||||||||||
|---|---|---|---|---|---|---|---|---|---|---|---|
| seq id | position | ref | new | freq | score (cons/poly) | reads | annotation | genes | product | ||
| * | minE | 526,368 | 0 | C | T | 18.3% | 229.3 / 32.1 | 141 | I10I (ATC→ATT) | ybhL | predicted inner membrane protein |
| Reads supporting (aligned to +/- strand): ref base C (56/59); new base T (2/24); total (58/83) | |||||||||||
| Fisher's exact test for biased strand distribution p-value = 1.01e-04 | |||||||||||
| Kolmogorov-Smirnov test that lower quality scores support variant p-value = 7.45e-01 | |||||||||||
Only 100 of 145 total aligned reads displayed.
TATCCTTAAGATATTCCTTATATCTTCAGGAGATCGTCATGGACAGATTCCCACGTTCTGATTCAATCGTACAACCCCGGGCTGGCTTGCAAACTTATATGGCTCAAGTCTATGGCTGGATG > minE/526301‑526422 | tATCCTTAAGATATTCCTTATATCTTCAGGAGATCGTCATGGACAGATTCCCACGTTCTGATTCAATCg < 1:891817/69‑1 (MQ=255) aTCCTTAAGATATTCCTTATATCTTCAGGAGATCGTCATGGACAGATTCTCACGTTCTGATTCAATCGt < 1:1008918/69‑1 (MQ=255) aTCCTTAAGATATTCCTTATATCTTCAGGAGATCGTCATGGACAGATTCCCACGTTCTGATTCAATCGt < 1:1587201/69‑1 (MQ=255) aTCCTTAAGATATTCCTTATATCTTCAGGAGATCGTCATGGACAGATTCCCACGTTCTGATTCAATCGt < 1:1939621/69‑1 (MQ=255) aTCCTTAAGATATTCCTTATATCTTCAGGAGATCGTCATGGACAGATTCCCACGTTCTGATTCAATCGt < 1:377210/69‑1 (MQ=255) aTCCTTAAGATATTCCTTATATCTTCAGGAGATCGTCATGGACAGATTCCCACGTTCTGATTCAATCGt < 1:1012583/69‑1 (MQ=255) tCCTTAAGATATTCCTTATATCTTCAGGAGATCGTCATGGACAGATTCCCACGTTCTGATTCAATCGt > 1:1782234/1‑68 (MQ=255) cTTAAGATATTCCTTATATCTTCAGGAGATCGTCATGGACAGATTCCCACGTTCTGATTCAATCGTACa > 1:3212815/1‑69 (MQ=255) cTTAAGATATTCCTTATATCTTCAGGAGATCGTCATGGACAGATTCCCACGTTCTGATTCAATCGTACa > 1:1002545/1‑69 (MQ=255) cTTAAGATATTCCTTATATCTTCAGGAGATCGTCATGGACAGATTCCCACGTTCTGATTCAATCGTACa > 1:1894578/1‑69 (MQ=255) aaGATATTCCTTATATCTTCAGGAGATCGTCATGGACAGATTCCCACGTTCTGATTCAATCGTACAAc > 1:659976/1‑68 (MQ=255) atTCCTTATATCTTCAGGAGATCGTCATGGACAGATTCCCACGTTCTGATTCAATCGTACAACCCCgg > 1:406092/1‑68 (MQ=255) ttCCTTATATCTTCAGGAGATCGTCATGGACAGATTCCCACGTTCTGATTCAATCGTACAACCCCGggc > 1:606969/1‑69 (MQ=255) ttCCTTATATCTTCAGGAGATCGTCATGGACAGATTCCCACGTTCTGATTCAATCGTACAACCCCGggc > 1:3037776/1‑69 (MQ=255) ttCCTTATATCTTCAGGAGATCGTCATGGACAGATTCCCACGTTCTGATTCAATCGTACAACCCCGggc > 1:2232551/1‑69 (MQ=255) ttCCTTATATCTTCAGGAGATCGTCATGGACAGATTCCCACGTTCTGATTCAATCGTACAACCCCGggc > 1:2218868/1‑69 (MQ=255) ttCCTTATATCTTCAGGAGATCGTCATGGACAGATTCCCACGTTCTGATTCAATCGTACAACCCCGggc > 1:2754206/1‑69 (MQ=255) ttCCTTATATCTTCAGGAGATCGTCATGGACAGATTCCCACGTTCTGATTCAATCGTACAACCCCGggc > 1:1317530/1‑69 (MQ=255) ttCCTTATATCTTCAGGAGATCGTCATGGACAGATTCCCACGTTCTGATTCAATCGTACAACCCCGggc > 1:1361609/1‑69 (MQ=255) ccTTATATCTTCAGGAGATCGTCATGGACAGATTCCCACGTTCTGATTCAATCGTACAACCCCGggctg > 1:2965391/1‑69 (MQ=255) ccTTATATCTTCAGGAGATCGTCATGGACAGATTCCCACGTTCTGATTCAATCGTACAACCCCGggctg > 1:2133421/1‑69 (MQ=255) ccTTATATCTTCAGGAGATCGTCATGGACAGATTCCCACGTTCTGATTCAATCGTACAACCCCGggctg > 1:31191/1‑69 (MQ=255) ccTTATATCTTCAGGAGATCGTCATGGACAGATTCCCACGTTCTGATTCAATCGTACAACCCCGggctg > 1:2113875/1‑69 (MQ=255) tatCTTCAGGAGATCGTCATGGACAGATTCCCACGTTCTGATTCAATCGTACAACCCCGGGCTGGCtt > 1:2474156/1‑68 (MQ=255) tatCTTCAGGAGATCGTCATGGACAGATTCCCACGTTCTGATTCAATCGTACAACCCCGGGCTGGCtt > 1:1288089/1‑68 (MQ=255) ttCAGGAGATCGTCATGGACAGATTCCCACGTTCTGATTCAATCGTACAACCCCGGGCTGGCTTGCaaa > 1:2298287/1‑69 (MQ=255) ttCAGGAGATCGTCATGGACAGATTCCCACGTTCTGATTCAATCGTACAACCCCGGGCTGGCTTGCaaa > 1:2800902/1‑69 (MQ=255) ttCAGGAGATCGTCATGGACAGATTCCCACGTTCTGATTCAATCGTACAACCCCGGGCTGGCTTGCaaa > 1:662938/1‑69 (MQ=255) ttCAGGAGATCGTCATGGACAGATTCCCACGTTCTGATTCAATCGTACAACCCCGGGCTGGCTTGCaaa > 1:2882197/1‑69 (MQ=255) ttCAGGAGATCGTCATGGACAGATTCCCACGTTCTGATTCAATCGTACAACCCCGGGCTGGCTTGCaa < 1:918791/68‑1 (MQ=255) ttCAGGAGATCGTCATGGACAGATTCCCACGTTCTGATTCAATCGTACAACCCCGGGCTGGCTTGCaa < 1:2194692/68‑1 (MQ=255) ttCAGGAGATCGTCATGGACAGATTCCCACGTTCTGATTCAATCGTACAACCCCGGGCTGGCTTGCaa < 1:36275/68‑1 (MQ=255) ttCAGGAGAAAGTCATGGACAGATTCCCACGTTCTGATTCAATTGTACAACCCCGGGCTGGCTTGCaa < 1:2851144/68‑1 (MQ=255) ttCAGGAGAAAGTCATGGACAGATTCCCACGTTCTGATTCAATTGTACAACCCCGGGCTGGCTTGCaa < 1:267476/68‑1 (MQ=255) ttCAGGAGAAAGTCATGGACAGATTCCCACGTTCTGATTCAATTGTACAACCCCGGGCTGGCTTGCaa < 1:3043035/68‑1 (MQ=255) ttCAGGAGAAAGTCATGGACAGATTCCCACGTTCTGATTCAATTGTACAACCCCGGGCTGGCTTGCaa < 1:2501637/68‑1 (MQ=255) ttCAGGAGAAAGTCATGGACAGATTCCCACGTTCTGATTCAATTGTACAACCCCGGGCTGGCTTGCaa < 1:1168550/68‑1 (MQ=255) ttCAGGAGAAAGTCATGGACAGATTCCCACGTTCTGATTCAATTGTACAACCCCGGGCTGGCTTGCaa < 1:1341706/68‑1 (MQ=255) tCAGGAGAAAGTCATGGACAGATTCCCACGTTCTGATTCAATTGTACAACCCCGGGCTGGCTTGCaa < 1:3005804/67‑1 (MQ=255) tCAGGAGAAAGTCATGGACAGATTCCCACGTTCAGATTCACATGTACAACCCCGGGCTGGCTTTCaa < 1:2788130/67‑1 (MQ=255) ggAGATCGTCATGGACAGATTCCCACGTTCTGATTCAATCGTACAACCCCGGGCTGGCTTGCaa < 1:620441/64‑1 (MQ=255) gagaTCGTCATGGACAGATTCCCACGTTCTGATTCAATCGTACAACCCCGGGCTGGCTTGCAAACTta < 1:1859307/68‑1 (MQ=255) gagaTCGTCATGGACAGATTCCCACGTTCTGATTCAATCGTACAACCCCGGGCTGGCTTGCAAACTta < 1:3054621/68‑1 (MQ=255) gagaTCGTCATGGACAGATTCCCACGTTCTGATTCAATCGTACAACCCCGGGCTGGCTTGCAAACTta < 1:76480/68‑1 (MQ=255) gagaTCGTCATGGACAGATTCCCACGTTCTGATTCAATCGTACAACCCCGGGCTGGCTTGCAAACTta < 1:976940/68‑1 (MQ=255) gagaTCGTCATGGACAGATTCCCACGTTCTGATTCAATCGTACAACCCCGGGCTGGCTTGCAAACTta < 1:2870895/68‑1 (MQ=255) gagaTCGTCATGGACAGATTCCCACGTTCTGATTCAATCGTACAACCCCGGGCTGGCTTGCAAACTta < 1:3155818/68‑1 (MQ=255) gagaTCGTCATGGACAGATTCCCACGTTCTGATTCAATCGTACAACCCCGGGCTGGCTTGCAAACTta < 1:3179561/68‑1 (MQ=255) gagaTCGTCATGGACAGATTCCCACGTTCTGATTCAATCGTACAACCCCGGGCTGGCTTGCAAACTta < 1:2739517/68‑1 (MQ=255) gagaTCGTCATGGACAGATTCCCACGTTCTGATTCAATCGTACAACCCCGGGCTGGCTTGCAAACTta < 1:617232/68‑1 (MQ=255) gagaTCGTCATGGACAGATTCCCACGTTCTGATTCAATCGTACAACCCCGGGCTGGCTTGCAAACTta < 1:3259301/68‑1 (MQ=255) gagaTCGTCATGGACAGATTCCCACGTTCTGATTCAATCGTACAACCCCGGGCTGGCTTGCAAACTta < 1:33457/68‑1 (MQ=255) gagaTCGTCATGGACAGATTCCCACGTTCTGATTCAATCGTACAACCCCGGGCTGGCTTGCAAACTta < 1:1260855/68‑1 (MQ=255) gagaTCGTCATGGACAGATTCCCACGTTCTGATTCAATCGTACAACCCCGGGCTGGCTTGCAAACTta < 1:988782/68‑1 (MQ=255) gagaTCGTCATGGACAGATTCCCACGTTCTGATTCAATCGTACAACCCCGGGCTGGCTTGCAAACTta < 1:2332476/68‑1 (MQ=255) agaTCGTCATGGACAGATTCCCACGTTCTGATTCAATCGTACAACCCCGGGCTGGCTTGCAAACTta < 1:2061198/67‑1 (MQ=255) aaagTCATGGACAGATTCCCACGTTCTGATTCAATTGTACAACCCCGGGCTGGCTTGCaa < 1:112854/57‑1 (MQ=255) cGTCATGGACAGATTCGCACGTTCTGATTCAATCGTACAACCCCGGGCTGGCTTGCAAACTta > 1:2604962/1‑63 (MQ=255) cGTCATGGACAGATTCCCACGTTCTGATTCAATCGTAc > 1:2548494/1‑38 (MQ=255) cGTCATGGACAGATTCCCACGTTCTGATTCAATCGTAc > 1:2469142/1‑38 (MQ=255) cGTCATGGACAGATTCCCACGTTCTGATTCAATCGTACAACCCCGGGCTGGCTTGCAATCTta > 1:549683/1‑63 (MQ=255) cGTCATGGACAGATTCCCACGTTCTGATTCAATCGTACAACCCCGGGCTGGCTTGCAAACTta < 1:669159/63‑1 (MQ=255) cGTCATGGACAGATTCCCACGTTCTGATTCAATCGTACAACCCCGGGCTGGCTTGCAAACTta > 1:3193694/1‑63 (MQ=255) cGTCATGGACAGATTCCCACGTTCTGATTCAATCGTACAACCCCGGGCTGGCTTGCAAACTta < 1:2922812/63‑1 (MQ=255) cGTCATGGACAGATTCCCACGTTCTGATTCAATCGTACAACCCCGGGCTGGCTTGCAAACTta < 1:2947520/63‑1 (MQ=255) cGTCATGGACAGATTCCCACGTTCTGATTCAATCGTACAACCCCGGGCTGGCTTGCAAACTta < 1:142404/63‑1 (MQ=255) cGTCATGGACAGATTCCCACGTTCTGATTCAATCGTACAACCCCGGGCTGGCTTGCAAACTta > 1:1932659/1‑63 (MQ=255) cGTCATGGACAGATTCCCACGTTCTGATTCAATCGTACAACCCCGGGCTGGCTTGCAAACTta > 1:1319142/1‑63 (MQ=255) cGTCATGGACAGATTCCCACGTTCTGATTCAATCGTACAACCCCGGGCTGGCTTGCAAACTta < 1:2680626/63‑1 (MQ=255) cGTCATGGACAGATTCCCACGTTCTGATTCAATCGTACAACCCCGGGCTGGCTTGCAAACTta > 1:261494/1‑63 (MQ=255) cGTCATGGACAGATTCCCACGTTCTGATTCAATCGTACAACCCCGGGCTGGCTTGCAAACTta < 1:1350681/63‑1 (MQ=255) cGTCATGGACAGATTCCCACGTTCTGATTCAATCGTACAACCCCGGGCTGGCTTGCAAACTta < 1:2975541/63‑1 (MQ=255) cGTCATGGACAGATTCCCACGTTCTGATT‑AATCGTAc > 1:3275551/1‑37 (MQ=38) aTGGACAGATTCCCACGTTCTGATTCAATTGTACAACCCCGGGCTGGCTTGCAAACTTATATGGCGCaa < 1:517456/69‑1 (MQ=255) aTGGACAGATTCCCACGTTCTGATTCAATTGTACAACCCCGGGCTGGCTTGCAAACTTATATGGCGCaa < 1:811006/69‑1 (MQ=255) aTGGACAGATTCCCACGTTCTGATTCAATTGTACAACCCCGGGCTGGCTTGCAAACTTATATGGCGCaa < 1:2013531/69‑1 (MQ=255) aTGGACAGATTCCCACGTTCTGATTCAATTGTACAACCCCGGGCTGGCTTGCAAACTTATATGGCGCaa < 1:584273/69‑1 (MQ=255) aTGGACAGATTCCCACGTTCTGATTCAATTGTACAACCCCGGGCTGGCTTGCAAACTTATATGGCGCaa < 1:567071/69‑1 (MQ=255) aTGGACAGATTCCCACGTTCTGATTCAATTGTACAACCCCGGGCTGGCTTGCAAACTTATATGGCGCaa < 1:336155/69‑1 (MQ=255) ttgACAGATTCCCACGTTCTGATTCAATTGTACAACCCCGGGCTGGCTTGCAAACTTATATGGCGCaa < 1:252803/66‑1 (MQ=255) tGGACAGATTCCCACGTTCTGATTCAATTGTACAACCCCGGGCTGGCTTGCAAACTTATATGGCGCaa < 1:2280362/68‑1 (MQ=255) aCAGATTCCGACGTTCTGATTCAATTGTACAACCCCGGGCTGGCTTGCAAACTTATATGGCGCAAGTCt > 1:1122886/1‑69 (MQ=255) cAGATTCCCACGTTCTGATTCAATCGTACAACCCCGGGCTGGCTTGCAAACTta < 1:2578411/54‑1 (MQ=255) aGATTCCCACGTTCTGATTCAATCGTACAACCCCGGGCTGGCTTGCAAACTTATATGGCTCAAGTCTAt > 1:458216/1‑69 (MQ=255) gATTCCCACGTTCTGATTCAATCTTACAACCCCGGGCTGGCTTGCAAACTTATATGGCTCAAGTCTATg > 1:818813/1‑69 (MQ=255) gATTCCCACGTTCTGATTCAATCGTACAACCCCGGGCTGGCTTGCAAACTTATATGGCTCAAGTCTATg > 1:388711/1‑69 (MQ=255) gATTCCCACGTTCTGATTCAATCGTACAACCCCGGGCTGGCTTGCAAACTTATATGGCTCAAGTCTATg > 1:150780/1‑69 (MQ=255) gATTCCCACGTTCTGATTCAATCGTACAACCCCGGGCTGGCTTGCAAACTTATATGGCTCAAGTCTATg > 1:1584778/1‑69 (MQ=255) gATTCCCACGTTCTGATTCAATCGTACAACCCCGGGCTGGCTTGCAAACTTATATGGCTCAAGTCTATg > 1:2100281/1‑69 (MQ=255) gATTCCCACGTTCTGATTCAATCGTACAACCCCGGGCTGGCTTGCAAACTTATATGGCTCAAGTCTATg > 1:2089501/1‑69 (MQ=255) gATTCCCACGTTCTGATTCAATCGTACAACCCCGGGCTGGCTTGCAAACTTATATGGCTCAAGTCTATg > 1:2812402/1‑69 (MQ=255) gATTCCCACGTTCTGATTCAATCGTACAACCCCGGGCTGGCTTGCAAACTTATATGGCTCAAGTCTATg > 1:1927601/1‑69 (MQ=255) cccACGTTCTGATTCAATCGTACAACCCCGGGCTGGCTTGCAAACTTATATGGCTCAAGTCTATGGCTg < 1:1686671/69‑1 (MQ=255) cccACGTTCTGATTCAATCGTACAACCCCGGGCTGGCTTGCAAACTTATATGGCTCAAGTCTATGGCTg < 1:776621/69‑1 (MQ=255) cccACGTTCTGATTCAATCGTACAACCCCGGGCTGGCTTGCAAACTTATATGGCTCAAGTCTATGGCTg < 1:3164949/69‑1 (MQ=255) cccACGTTCTGATTCAATCGTACAACCCCGGGCTGGCTTGCAAACTTATATGGCTCAAGTCTATGGCTg < 1:2525913/69‑1 (MQ=255) cccACGTTCTGATTCAATCGTACAACCCCGGGCTGGCTTGCAAACTTATATGGCTCAAGTCTATGGCTg < 1:1190679/69‑1 (MQ=255) cGTACAGCCCCGGGCTGGCTTGCAAACTTATATGGCTCAAGTCTATGGCTGGa > 1:437556/1‑53 (MQ=255) cGTACAACCCCGGGCTGGCTTGCAAACTTATATGGCTCAAGTCTATGGCTGGATg > 1:2821467/1‑55 (MQ=255) cGTACAACCCCGGGCTGGCTTGCAAACTTATATGGCTCAAGTCTATGGCTGGATg > 1:2333295/1‑55 (MQ=255) | TATCCTTAAGATATTCCTTATATCTTCAGGAGATCGTCATGGACAGATTCCCACGTTCTGATTCAATCGTACAACCCCGGGCTGGCTTGCAAACTTATATGGCTCAAGTCTATGGCTGGATG > minE/526301‑526422 |
| Alignment Legend |
|---|
Aligned base mismatch/match (shaded by quality score): ATCG/ATCG < 3 ≤ ATCG/ATCG < 21 ≤ ATCG/ATCG < 32 ≤ ATCG/ATCG < 36 ≤ ATCG/ATCG |
Unaligned base: atcg Masked matching base: atcg Alignment gap: ‑ Deleted base: ‑ |