| Predicted mutation | |||||||
|---|---|---|---|---|---|---|---|
| evidence | seq id | position | mutation | freq | annotation | gene | description |
| RA | minE | 531,622 | G→A | 34.0% | N314N (AAC→AAT) | ybhR ← | predicted transporter subunit |
| Read alignment evidence... | |||||||||||
|---|---|---|---|---|---|---|---|---|---|---|---|
| seq id | position | ref | new | freq | score (cons/poly) | reads | annotation | genes | product | ||
| * | minE | 531,622 | 0 | G | A | 34.0% | 63.9 / 43.4 | 82 | N314N (AAC→AAT) | ybhR | predicted transporter subunit |
| Reads supporting (aligned to +/- strand): ref base G (15/39); new base A (5/23); total (20/62) | |||||||||||
| Fisher's exact test for biased strand distribution p-value = 4.20e-01 | |||||||||||
| Kolmogorov-Smirnov test that lower quality scores support variant p-value = 9.84e-01 | |||||||||||
CTCGCATCCTTCAAATAAATCTGCTTGGTAATGTCCGTAAAGTGGCGAATAGGGTTAATCCACGTCAGGTTTTGCAGCCATACCGGCATGTTTTCCACCGGAGAAACGTAACCGGAAAGGAGA > minE/531554‑531676 | cTCGCATCCTTCAAATAAATCTGCTTGGTAATGTCCGTAAAGTGGCGAATAGGGTTAATCCACGTCAgg < 1:1095705/69‑1 (MQ=255) tCAAATAAATCTGCTTGGTAATGTCCGTAAAGTGGCGAATAGGGTTAATCCACGTCAGGTTTTGCAGc < 1:3374154/68‑1 (MQ=255) tCAAATAAATCTGCTTGGTAATGTCCGTAAAGTGGCGAATAGGGTTAATCCACGTCAGGTTTTGCAGc < 1:333625/68‑1 (MQ=255) tCAAATAAATCTGCTTGGTAATGTCCGTAAAGTGGCGAATAGGGTTAATCCACGTCAGGTTTTGCAGc < 1:18199/68‑1 (MQ=255) tCAAATAAATCTGCTTGGTAATGTCCGTAAAGTGGCGAATAGGGTTAATCCACGTCAGGTTTTGCAGc < 1:2518716/68‑1 (MQ=255) tCAAATAAATCTGCTTGGTAATGTCCGTAAAGTGGCGAATAGGGTTAATCCACGTCAGGTTTTGCAGc < 1:3099832/68‑1 (MQ=255) aataaatCTGCTTGGTAATGTCCGTAATGTGGCGAATAGGGTTAATCCACGTCAGGTTTTGCAGCCAt < 1:2803570/68‑1 (MQ=255) aataaatCTGCTTGGTAATGTCCGTAAAGTGGCGAATAGGGTTAATCCACGTCAGGTTTTGCAGCCAt < 1:2638522/68‑1 (MQ=255) aataaatCTGCTTGGTAATGTCCGTAAAGTGGCGAATAGGGTTAATCCACGTCAGGTTTTGCAGCCAt < 1:3384902/68‑1 (MQ=255) aataaatCTGCTTGGTAATGTCCGTAAAGTGGCGAATAGGGTTAATCCACGTCAGGTTTTGCAGCCAt < 1:217876/68‑1 (MQ=255) aataaatCTGCTTGGTAATGTCCGTAAAGTGGCGAATAGGGTTAATCCACGTCAGGTTTTGCAGCCAt < 1:241687/68‑1 (MQ=255) aataaatCTGCTTGGTAATGTCCGTAAAGTGGCGAATAGGGTTAATCCACGTCAGGTTTTGCAGCCAt < 1:3306632/68‑1 (MQ=255) aataaatCTGCTTGGTAATGTCCGTAAAGTGGCGAATAGGGTTAATCCACGTCAGGTTTTGCAGCCAt < 1:687778/68‑1 (MQ=255) aataaatCTGCTTGGTAATGTCCGTAAAGTGGCGAATAGGGTTAATCCACGTCAGGTTTTGCAGCCAt < 1:1511180/68‑1 (MQ=255) aataaatCTGCTTGGTAATGTCCGTAAAGTGGCGAATAGGGTTAATCCACGTCAGGTTTTGCAGCCAt < 1:798771/68‑1 (MQ=255) aataaatCTGCTTGGTAATGTCCGTAAAGTGGCGAATAGGGTTAATCCACGTCAGGTTTTGCAGCCAt < 1:2677337/68‑1 (MQ=255) aataaatCTGCTTGGTAATGTCCGTAAAGTGGCGAATAGGGTTAATCCACGTCAGGTTTTGCAGCCAt < 1:3063983/68‑1 (MQ=255) aataaatCTGCTTGGTAATGTCCGTAAAGTGGCGAATAGGGTTAATCCACGTCAGGTTTTGCAGCCAt < 1:135230/68‑1 (MQ=255) aataaatCTGCTTGGTAATGTCCGTAAAGTGGCGAATAGGGTTAATCCACGTCAGGTTTTGCAGCCAt < 1:283376/68‑1 (MQ=255) aataaatCTGCTTGGTAATGTCCGTAAAGTGGCGAATAGGGTTAATCCACGTCAGGTTTTGCAGCCAt < 1:1024842/68‑1 (MQ=255) taaatCTGCTTGGTAATGTCCGTAAAGTGGCGAATAGGGTTAATCCACGTCAGATTTTGCAGc < 1:2104561/63‑1 (MQ=255) taaatCTGCTTGGTAATGTCCGTAAAGTGGCGAATAGGGTTAATCCACGTCAGATTTTGCAGc < 1:3084640/63‑1 (MQ=255) taaatCTGCTTGGTAATGTCCGTAAAGTGGCGAATAGGGTTAATCCACGTCAGATTTTGCAGc < 1:3208846/63‑1 (MQ=255) taaatCTGCTTGGTAATGTCCGTAAAGTGGCGAATAGGGTTAATCCACGTCAGATTTTGCAGc < 1:3080591/63‑1 (MQ=255) taaatCTGCTTGGTAATGTCCGTAAAGTGGCGAATAGGGTTAATCCACGTCAGATTTTGCAGc < 1:3323978/63‑1 (MQ=255) taaatCTGCTTGGTAATGTCCGTAAAGTGGCGAATAGGGTTAATCCACGTCAGATTTTGCAGc < 1:3374484/63‑1 (MQ=255) taaatCTGCTTGGTAATGTCCGTAAAGTGGCGAATAGGGTTAATCCACGTCAGATTTTGCAGc < 1:3012169/63‑1 (MQ=255) taaatCTGCTTGGTAATGTCCGTAAAGTGGCGAATAGGGTTAATCCACGTCAGATTTTGCAGc < 1:173130/63‑1 (MQ=255) taaatCTGCTTGGTAATGTCCGTAAAGTGGCGAATAGGGTTAATCCACGTCAGATTTTGCAGc < 1:978665/63‑1 (MQ=255) taaatCTGCTTGGTAATGTCCGTAAAGTGGCGAATAGGGTTAATCCACGTCAGATTTTGCAGc < 1:1104317/63‑1 (MQ=255) taaatCTGCTTGGTAATGTCCGTAAAGTGGCGAATAGGGTTAATCCACGTCAGATTTTGCAGc < 1:1208409/63‑1 (MQ=255) taaatCTGCTTGGTAATGTCCGTAAAGTGGCGAATAGGGTTAATCCACGTCAGATTTTGCAGc < 1:91331/63‑1 (MQ=255) taaatCTGCTTGGTAATGTCCGTAAAGTGGCGAATAGGGTTAATCCACGTCAGATTTTGCAGc < 1:1416025/63‑1 (MQ=255) taaatCTGCTTGGTAATGTCCGTAAAGTGGCGAATAGGGTTAATCCACGTCAGATTTTGCAGc < 1:800112/63‑1 (MQ=255) taaatCTGCTTGGTAATGTCCGTAAAGTGGCGAATAGGGTTAATCCACGTCAGATTTTGCAGc < 1:1532245/63‑1 (MQ=255) taaatCTGCTTGGTAATGTCCGTAAAGTGGCGAATAGGGTTAATCCACGTCAGATTTTGCAGc < 1:1689695/63‑1 (MQ=255) taaatCTGCTTGGTAATGTCCGTAAAGTGGCGAATAGGGTTAATCCACGTCAGATTTTGCAGc < 1:2264323/63‑1 (MQ=255) taaatCTGCTTGGTAATGTCCGTAAAGTGGCGAATAGGGTTAATCCACGTCAGATTTTGCAGc < 1:765286/63‑1 (MQ=255) taaatCTGCTTGGTAATGTCCGTAAAGTGGCGAATAGGGTTAATCCACGTCAGATTTTGCAGc < 1:621747/63‑1 (MQ=255) taaatCTGCTTGGTAATGTCCGTAAAGTGGCGAATAGGGTTAATCCACGTCAGATTTTGCAGc < 1:1976073/63‑1 (MQ=255) taaatCTGCTTGGTAATGTCCGTAAAGTGGCGAATAGGGTTAATCCACGTCAGATTTTGCAGc < 1:3425476/63‑1 (MQ=255) taaatCTGCTTGGTAATGTCCGTAAAGTGGCGAATAGGGTTAATCCACGTCAGATTTTGCAGc < 1:3419932/63‑1 (MQ=255) taaatCTGCTTGGTAATGTCCGTAAAGTGGCGAATAGGGTTAATCCACGTCAGATTTTGCAGc < 1:2208103/63‑1 (MQ=255) tGGTAATGTCCGTAAAGTGGCGAATAGGGTTAATCCACGTCAGGTTTTGCAGCCATACCGGCATGttt > 1:1572977/1‑68 (MQ=255) tCCGTAAAGTGGCGAATAGGGTTAATCCACGTCAGGTTTTGCAGCCATACCGGCATGTTTTCCACCgg > 1:577780/1‑68 (MQ=255) tCCGTAAAGTGGCGAATAGGGTTAATCCACGTCAGGTTTTGCAGCCATACCGGCATGTTTTCCACCgg > 1:101090/1‑68 (MQ=255) tCCGTAAAGTGGCGAATAGGGTTAATCCACGTCAGGTTTTGCAGCCATACCGGCATGTTTTCCACCgg > 1:1773858/1‑68 (MQ=255) tCCGTAAAGTGGCGAATAGGGTTAATCCACGTCAGGTTTTGCAGCCATACCGGCATGTTTTCCACCgg > 1:2428682/1‑68 (MQ=255) tCCGTAAAGTGGCGAATAGGGTTAATCCACGTCAGGTTTTGCAGCCATACCGGCATGTTTTCCACCg > 1:611775/1‑67 (MQ=255) tCCGTAAAGTGGCGAATAGGGTTAATCCACGTCAGGTTTTGCAGCCATACCGGCATGTTTTCCACCg > 1:2471681/1‑67 (MQ=255) tCCGTAAAGTGGCGAATAGGGTTAATCCACGTCAGGTTTTGCAGCCATACCGGCATGTTTTCCAACgg > 1:3030446/1‑68 (MQ=255) tCCGTAAAGTGGCGAATAGGGTTAATCCACGTCAGGTTTTGCAGCCACACCGGCATGTTTTCCACCgg > 1:1455968/1‑68 (MQ=255) tAAAGTGGCGAATAGGGTTAATCCACGTCAGGTTTTGCAGCCATACCGGCATGTTTTCCAGCGGAGaa < 1:2934289/68‑1 (MQ=255) tAAAGTGGCGAATAGGGTTAATCCACGTCAGGTTTTGCAGCCATACCGGCATGTTTTCCACCGGAGaaa < 1:637611/69‑1 (MQ=255) tAAAGTGGCGAATAGGGTTAATCCACGTCAGGTTTTGCAGCCATACCGGCATGTTTTCCACCGGAGaaa < 1:2502863/69‑1 (MQ=255) tAAAGTGGCGAATAGGGTTAATCCACGTCAGGTTTTGCAGCCATACCGGCATGTTTTCCACCGGAGaaa < 1:2981648/69‑1 (MQ=255) tAAAGTGGCGAATAGGGTTAATCCACGTCAGGTTTTGCAGCCATACCGGCATGTTTTCCACCGGAGaa < 1:2275050/68‑1 (MQ=255) tAAAGTGGCGAATAGGGTTAATCCACGTCAGGTTTTGCAGCCATACCGGCATGTTTTCCACCGGAGaa < 1:2044105/68‑1 (MQ=255) tGGCGAATAGGGTTAATCCACGTCAGGTTTTGCAGCCATACCGGCATGTTTTCCACCGGAGAAACGTaa > 1:2484722/1‑69 (MQ=255) tGGCGAATAGGGTTAATCCACGTCAGGTTTTGCAGCCATACCGGCATGTTTTCCACCGGAGAAACGTaa > 1:2581649/1‑69 (MQ=255) tGGCGAATAGGGTTAATCCACGTCAGGTTTTGCAGCCATACCGGCATGTTTTCCACCGGAGAAACGTaa > 1:611131/1‑69 (MQ=255) tGGCGAATAGGGTTAATCCACGTCAGGTTTTGCAGCCATACCGGCATGTTTTCCACCGGAGAAACGTaa > 1:2650752/1‑69 (MQ=255) tGGCGAATAGGGTTAATCCACGTCAGGTTTTGCAGCCATACCGGCATGTTTTCCACCGGAGAAACGTaa > 1:1000678/1‑69 (MQ=255) tGGCGAATAGGGTTAATCCACGTCAGGTTTTGCAGCCATACCGGCATGTTTTCCACCGGAGAAACGTa > 1:814404/1‑68 (MQ=255) gTTAATCCACGTCAGGTTTTGCAGCCATACCGGCATGTTTTCCACCGGATAAACGTAACCGGAAAGgag < 1:3121150/69‑1 (MQ=255) gTTAATCCACGTCAGGTTTTGCAGCCATACCGGCATGTTTTCCACCGGAGAAACGTAACCGGAAAGgag < 1:1796088/69‑1 (MQ=255) gTTAATCCACGTCAGGTTTTGCAGCCATACCGGCATGTTTTCCACCGGAGAAACGTAACCGGAAAGgag < 1:533141/69‑1 (MQ=255) gTTAATCCACGTCAGGTTTTGCAGCCATACCGGCATGTTTTCCACCGGAGAAACGTAACCGGAAAGgag < 1:523373/69‑1 (MQ=255) gTTAATCCACGTCAGGTTTTGCAGCCATACCGGCATGTTTTCCACCGGAGAAACGTAACCGGAAAGgag < 1:503550/69‑1 (MQ=255) gTTAATCCACGTCAGGTTTTGCAGCCATACCGGCATGTTTTCCACCGGAGAAACGTAACCGGAAAGgag < 1:416336/69‑1 (MQ=255) gTTAATCCACGTCAGGTTTTGCAGCCATACCGGCATGTTTTCCACCGGAGAAACGTAACCGGAAAGgag < 1:1391523/69‑1 (MQ=255) gTTAATCCACGTCAGGTTTTGCAGCCATACCGGCATGTTTTCCACCGGAGAAACGTAACCGGAAAGgag < 1:3266341/69‑1 (MQ=255) ttAATCCACGTCAGGTTTTGCAGCCATACCGGCATGTTTTCCACCGGAGAAACGTAACCGGAAAGgag < 1:2578937/68‑1 (MQ=255) ttAATCCACGTCAGATTTTGCAGCCACATTGGCATGTTTTCCACCGGCGAAACGTAACCGGAAAGgaga > 1:984039/1‑69 (MQ=255) ttAATCCACGTCAGATTTTGCAGCCACATTGGCATGTTTTCCACCGGCGAAACGTAACCGGAAAGgaga > 1:615197/1‑69 (MQ=255) ttAATCCACGTCAGATTTTGCAGCCACATTGGCATGTTTTCCACCGGCGAAACGTAACCGGAAAGgaga > 1:2080562/1‑69 (MQ=255) ttAATCCACGTCAGATTTTGCAGCCACATTGGCATGTTTTCCACCGGCGAAACGTAACCGGAAAGgaga > 1:2794024/1‑69 (MQ=255) ttAATCCACGTCAGATTTTGCAGCCACATTGGCATGTTTTCCACCGGCGAAACGTAACCGGAAAGgag > 1:2651380/1‑68 (MQ=255) aGGTTTTGCAGCCATACCGGCATGTTTTCCACCGGAGAAACGTAACCGGAAAGgag < 1:1826390/56‑1 (MQ=255) aGGTTTTGCAGCCATACCGGCATGTTTTCCACCGGAGAAACGTAACCGGAAAGgag < 1:3428087/56‑1 (MQ=255) aGGTTTTGCAGCCATACCGGCATGTTTTCCACCGGAGAAACGTAACCGGAAAGgag < 1:1425120/56‑1 (MQ=255) aGGTTTTGCAGCCATACCGGCATGTTTTCCACCGGAGAAACGTAACCGGAAAGgag < 1:220230/56‑1 (MQ=255) aGGTTTTGCAGCCATACCGGCATGTTTTCCACCGGAGAAACGTAACCGGAAAGgag < 1:2402426/56‑1 (MQ=255) | CTCGCATCCTTCAAATAAATCTGCTTGGTAATGTCCGTAAAGTGGCGAATAGGGTTAATCCACGTCAGGTTTTGCAGCCATACCGGCATGTTTTCCACCGGAGAAACGTAACCGGAAAGGAGA > minE/531554‑531676 |
| Alignment Legend |
|---|
Aligned base mismatch/match (shaded by quality score): ATCG/ATCG < 3 ≤ ATCG/ATCG < 21 ≤ ATCG/ATCG < 32 ≤ ATCG/ATCG < 36 ≤ ATCG/ATCG |
Unaligned base: atcg Masked matching base: atcg Alignment gap: ‑ Deleted base: ‑ |