| New junction evidence | |||||||||||
|---|---|---|---|---|---|---|---|---|---|---|---|
| seq id | position | reads (cov) | reads (cov) | score | skew | freq | annotation | gene | product | ||
| * | ? | minE | 441587 = | 137 (1.800) | 6 (0.090) | 3/88 | NT | 5.3% | coding (2175/2199 nt) | speF | ornithine decarboxylase isozyme, inducible |
| ? | minE | 441625 = | 95 (1.420) | coding (2137/2199 nt) | speF | ornithine decarboxylase isozyme, inducible | |||||
TCTATATCGAAGAACATGATGGTCGTAAGCAAGTTTGGTGCTATGTCATCAAGCCTCGTGATGCGCAAAGCACC‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑ < minE/441660‑441587‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑agcaccAAACTTGCTTACGACCATCATGTTCTTCGATATAGACACCCTGCAGCTCCGGTGCAAAACCTGGCAGCA > minE/441625‑441693 TCTATATCGAAGAACATGATGGTCGTAAGCAAGTTTGGTGCTATGTCATCAAGCCTCGTGATGCGCAAAG < 1:2070553/70‑1 TATATCGAAGAACATGATGGTCGTAAGCAAGTTTGGTGCTATGTCATCAAGCCTCGTGATGCGCAAAGCAC > 1:1996291/1‑71 TATATCGAAGAACATGATGGTCGTAAGCAAGTTTGGTGCTATGTCATCAAGCCTCGTGATGCGCAAAGCAC > 1:4109537/1‑71 CGAAGAACATGATGGTCGTAAGCAAGTTTGGTGCTATGTCATCAAGCCTCGTGATGCGCAAA > 1:1308855/1‑62 GATGGTCGTAAGCAAGTTTGGTGCTATGTCATCAAGCCTCGTGATGCGCAAAGCACC > 1:1518373/1‑57 GATGGTCGTAAGCAAGTTTGGTGCTATGTCATCAAGCCTCGTGATGCGCAAA > 1:3523924/1‑52 TAAGCAAGTTTGGTGCTATGTCATCAAGCCTCGTGATGCGCAAAGCAC < 1:1893113/48‑1 TGGTGCTATGTCATCAAGCCTCGTGATGCGCAAAGCACCAAACTTGCTTACGACCATCATGTTCTTCGATA > 1:1678110/1‑71 TCATCAAGCCTCGTGATGCCCAAAGCACCAAACTTGCTTACGACCATCATGTTCTTCGATATAGACACCCT < 1:4153196/71‑1 ATCAAGCCTCGTGATGCGCAAAGCACCAAACTTGCTTACGACCATCATGTTCTTCGATATAGACACCCTG > 1:879320/1‑70 ATCAAGCCTCGTGATGCGCAAAGCACCAAACTTGCTTACGACCATCATGTTCTTCGATATAGACACCCTG > 1:1256391/1‑70 ATCAAGCCTCGTGATGCGCAAAGCACCAAACTTGCTTACGACCATCATGTTCTTCGATATAGACACCCTG > 1:30865/1‑70 ATCAAGCCTCGTGATGCGCAAAGCACCAAACTTGCTTACGACCATCATGTTCTTCGATATAGACACCCTG > 1:2317713/1‑70 GCACCAAACTTGCTTACGACCATCATGTTCTTCGATATAGACACCCTGCAGCTCCGGTGCAAAACCTGG > 1:303963/1‑69 GCACCAAACTTGCTTACGACCATCATGTTCTTCGATATAGACACCCTGCAGCTCCGGTGCAAAACCTGG > 1:2546321/1‑69 GCACCAAACTTGCTTACGACCATCATGTTCTTCGATATAGACACCCTGCAGCTCCGGTGCAAAACCTGG > 1:4211639/1‑69 GCACCAAACTTGCTTACGACCATCATGTTCTTCGATATAGACACCCTGCAGCTCC > 1:4560822/1‑55 GCACCAAACTTGCTTACGACCATCATGTTCTTCGATATA > 1:272466/1‑39 GCACCAAACTTGCTTACGACCATCATGTTCTTCGATA > 1:1505408/1‑37 CCAAACTTGCTTACGACCATCATGTTCTTCGATATAGACACCCTGCAGCTCCGGTGCAAAACCTGGCAGCA < 1:4595377/71‑1 CCAAACTTGCTTACGACCATCATGTTCTTCGATATAGA < 1:3614481/38‑1 CAAACTTGCTTACGACCATCATGTTCTTCGATATA < 1:3369118/35‑1 TCTATATCGAAGAACATGATGGTCGTAAGCAAGTTTGGTGCTATGTCATCAAGCCTCGTGATGCGCAAAGCACC‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑ < minE/441660‑441587‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑agcaccAAACTTGCTTACGACCATCATGTTCTTCGATATAGACACCCTGCAGCTCCGGTGCAAAACCTGGCAGCA > minE/441625‑441693 |
| Alignment Legend |
|---|
Aligned base mismatch/match (shaded by quality score): ATCG/ATCG < 3 ≤ ATCG/ATCG < 27 ≤ ATCG/ATCG < 32 ≤ ATCG/ATCG < 36 ≤ ATCG/ATCG |
Unaligned base: atcg Masked matching base: atcg Alignment gap: ‑ Deleted base: ‑ |
| Reads not counted as support for junction |
| read_name Not counted due to insufficient overlap past the breakpoint. |
| read_name Not counted due to not crossing MOB target site duplication. |