| New junction evidence | |||||||||||
|---|---|---|---|---|---|---|---|---|---|---|---|
| seq id | position | reads (cov) | reads (cov) | score | skew | freq | annotation | gene | product | ||
| * | ? | minE | = 1206993 | 104 (1.370) | 3 (0.040) | 3/96 | NT | 2.7% | intergenic (+58/‑5) | manX/manY | fused mannose‑specific PTS enzyme IIAB components/mannose‑specific enzyme IIC component of PTS |
| ? | minE | = 1207024 | 115 (1.570) | coding (27/801 nt) | manY | mannose‑specific enzyme IIC component of PTS | |||||
| Rejected: Frequency below/above cutoff threshold. | |||||||||||
AATCGATAAGTAACGTATTGTGTTGATTATCACTCAGTTTTCACACTTAAGTCTTACGTAAACAGGAGAAG‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑ > minE/1206923‑1206993‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑agCACAATTTGAAGAGTGGTAATCTCCATTGTACTTCTC < minE/1207024‑1206988 AATCGATAAGTAACGTATTGTGTTGATTATCACTCAGTTTTCACACTTAAGTCTTACGTAAACAGGAGAAG > 1:1138718/1‑71 TTGTGTTGATTATCACTCAGTTTTCACACTTAAGTCTTACGTAAACAGGAGAAGCACAATTTGAAGAGTGG > 1:4504714/1‑71 TTGATTATCACTCAGTTTTCACACTTAAGTCTTACGTAAACAGGAGAAGCACAATTTGAAGAGTGGTAAT > 1:2488755/1‑70 TTTTCACACTTAAGTCTTACGTAAACAGGAGAAGCACAATTTGAAGAGTGGTAATCTCCATTGTACTTCTC < 1:169642/71‑1 AATCGATAAGTAACGTATTGTGTTGATTATCACTCAGTTTTCACACTTAAGTCTTACGTAAACAGGAGAAG‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑ > minE/1206923‑1206993‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑agCACAATTTGAAGAGTGGTAATCTCCATTGTACTTCTC < minE/1207024‑1206988 |
| Alignment Legend |
|---|
Aligned base mismatch/match (shaded by quality score): ATCG/ATCG < 3 ≤ ATCG/ATCG < 32 ≤ ATCG/ATCG < 36 ≤ ATCG/ATCG |
Unaligned base: atcg Masked matching base: atcg Alignment gap: ‑ Deleted base: ‑ |
| Reads not counted as support for junction |
| read_name Not counted due to insufficient overlap past the breakpoint. |
| read_name Not counted due to not crossing MOB target site duplication. |