| New junction evidence | |||||||||||
|---|---|---|---|---|---|---|---|---|---|---|---|
| seq id | position | reads (cov) | reads (cov) | score | skew | freq | annotation | gene | product | ||
| * | ? | minE | = 2232355 | NA (NA) | 4 (0.060) | 3/94 | NT | NA | intergenic (‑11/+183) | rrlD/gltV | 23S ribosomal RNA/tRNA‑Glu |
| ? | minE | = 2232377 | NA (NA) | intergenic (‑33/+161) | rrlD/gltV | 23S ribosomal RNA/tRNA‑Glu | |||||
GCACGTCCTTCATCGCCTCTGACTGCCAGGGCATCCACCGTGTACGCTTAGTCGCTTAACCTCACAACCCGA‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑ > minE/2232284‑2232355‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑cgaTGATGAATCGAAAGAAACATCTTCGGGTTGTGAGGTTAAGCGACTAAGCGTACACGGTGGATGCCCTGGC < minE/2232377‑2232308 GCACGTCCTTCATCGCCTCTGACTGCCAGGGCATCCACCGTGTACGCTTAGTCGCTTAACTTCACAACCCG < 1:4479527/71‑1GCACGTCCTTCATCGCCTCTGACTGCCAGGGCATCCACCGTGTACGCTTAGTCGCTTAACCTCACAACCCG < 1:4604742/71‑1GCACGTCCTTCATCGCCTCTGACTGCCAGGGCATCCACCGTGTACGCTTAGTCGCTTAACCTCACAACCCG < 1:1562876/71‑1GCACGTCCTTCATCGCCTCTGACTGCCAGGGCATCCACCGTGTACGCTTAGTCGCTTAACCTCACAACCCG < 1:3896603/71‑1 CACGTCCTTCATCGCCTCTGACTGCCAGGGCATCCACCGTGTACGCTTAGTCGCTTAACCTCACAACCCGA < 1:4447993/71‑1 CACGTCCTTCATCGCCTCTGACTGCCAGGGCATCCACCGTGTACGCTTAGTCGCTTAACCTCACAACCCG > 1:3577694/1‑70 CACGTCCTTCATCGCCTCTGACTGCCAGGGCATCCACCGTGTACGCTTAGTCGCTTAACCTCACAACCCG < 1:1849190/70‑1 ACGTCCTTCATCGCCTCTGACTGCCAGGGCATCCACCGTGTACGCTTAGTCGCTTAACCTCACAACCCG > 1:4236411/1‑69 ACGTCCTTCATCGCCTCTGACTGCCAGGGCATCCACCGTGTACGCTTAGTCGCTTAACCTCACAACCCG > 1:2367491/1‑69 ACGTCCTTCATCGCCTCTGACTCCCAGGGCATCCACCGTGTACGCTTAGTCGCTTAACCTCACAACCCG > 1:2422391/1‑69 GTCCTTCATCGCCTCTGACTGCCAGGGCATCCACCGTGTACGCTTAGTCGCTTAACCTCACAACCCG > 1:537801/1‑67 TTCATCGCCTCTGACTGCCAGGGCATCCACCGTGTACGCTTAGTCGCTTAACCTCACAACCCG < 1:1246938/63‑1 CATCGCCTCTGACTGCCAGGGCATCCACCGTGTACGCTTAGTCGCTTAACCTCACAACCCGATGATGtt < 1:4508389/69‑3 CTGACTGCCAGGGCATCCACCGTGTACGCTTAGTCGCTTAACCTCACAACCCG < 1:3174735/53‑1 ACTGCCAGGGCATCCTCCGTGTACGCTTTGTCGCTTAACCTCACAACCCG < 1:164111/50‑1 CCAGGGCATCCACCGTGTACGCTTAGTCGCTTAACCTCACAACCCGATGATGAATCGTAAGAAACATCTTC > 1:4131515/1‑71 AGGGCATCCACCGTGTACGCTTAGTCGCTTAACCTCACAACCCG < 1:1213547/44‑1 GGCATCCACCGTGTACGCTTAGTCGCTTAACCTCACAACCCG < 1:1961343/42‑1 GGCATCCACCGTGTACGCTTAGTCGCTTAACCTCACAACCCG < 1:271931/42‑1 GCATCCACCGTGTACGCTTAGTCGCTTAACCTCACAACCCGA < 1:4539336/42‑1 CGTGTACGCTTAGTCGCTTAACCTCACAACACGATGATGAATCGAAAGAAACAT < 1:3570105/54‑1 GTGTACGCTTAGTCGCTTAACCTCACAACACGATGATGAATCGAAAGAAACAT < 1:2545283/53‑1 ACGCTTAGTCGCTTAACCTCACAACCCGATGATGAATCGAAAGAAACATCTTC > 1:3548376/1‑53 acgCGATGATGAATCGTAAGAAACATCTTCGGGTTGTGAGGTTAAGCGACTAAGCGTACAC > 1:2006576/4‑61 caaGATGATGAATCGAAAGAAACATCTTCGGGTTGTGAGGTTAAGCGACTAAGCGTACACGGTGGATGCC > 1:2852036/4‑70 CGATGATGAATCGTAAGAAACATCTTCGGGTTGTGAGGTTAAGCGACTAAGCGTACACGGTGGATGCCCT > 1:2107166/1‑70 CGATGATGAATCGAAAGAAACATCTTCGGGTTGTGAGGTTAAGCGACTAAGCGTACACGGTGGATGCCCTG < 1:3612944/71‑1 CGATGATGAATCGAAAGAAACATCTTCGGGTTGTGAGGTTAAGCGACTAAGCGTACACGGTGGATGCCCTG > 1:610838/1‑71 CGATGATGAATCGAAAGAAACATCTTCGGGTTGTGAGGTTAAGCGACTAAGCGTACACGGTGGATGCCCTG > 1:900379/1‑71 CGATGATGAATCGAAAGAAACATCTTCGGGTTGTGAGGTTAAGCGAC > 1:626388/1‑47 CGATGATGAATCGAAAGAAACATCTTCGGGTTGTGAGGTTAAGC > 1:3081546/1‑44 CGATGATGAATCGAAAGAAACATCTTCGGGTTGTGAGGTTAAG > 1:2492775/1‑43 CGATGATGAATCGAAAGAAACATCTTCGGGTTGTGA > 1:2957934/1‑36 GATGATGAATCGTAAGAAACATCTACGGGTTGTGAGGTTAAGCGACTAAGCGTACACGGTGGATGCCCTGG < 1:1229451/71‑1 GATGATGAATCGAAAGAAACATCTTCGGGTTGTGAGGTTAAGCGACTAAGCGTACACGGTGGATGCCCTGG < 1:4292081/71‑1 GATGATGAATCGAAAGAAACATCTTCGGGTTGTGAGGTTAAGCGACTAAGCGTACACGGTGGATGCCCTGG > 1:2903283/1‑71 GATGATGAATCGAAAGAAACATCTTCGGGTTGTGAGGTTAAGCGACTAAGCGTACACGGTGGATGCCCTGG > 1:683061/1‑71 GATGATGAATCGAAAGAAACATCTTCGGGTTGTGAGGTTAAGCGACTAAGCGTACACGG > 1:1520588/1‑59 GATGATGAATCGAAAGAAACATCTTCGGGTTGTGAGGTTAAGCGACTAAGCGTA > 1:2182130/1‑54 ATGATGAATCGTAAGAAACATCTTCGGGTTGTGAGGTTAAGCGACTAAGCGTACACGGTGGATGCCCTGGC < 1:1960179/71‑1 ATGATGAATCGTAAGAAACATCTTCGGGTTGTGAGGTTAAGCGACTAAGCGTACA > 1:405158/1‑55 ATGATGAATCGTAAGAAACATCTTCGGGTTGTGAGGT < 1:2397296/37‑1 GCACGTCCTTCATCGCCTCTGACTGCCAGGGCATCCACCGTGTACGCTTAGTCGCTTAACCTCACAACCCGA‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑ > minE/2232284‑2232355‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑cgaTGATGAATCGAAAGAAACATCTTCGGGTTGTGAGGTTAAGCGACTAAGCGTACACGGTGGATGCCCTGGC < minE/2232377‑2232308 |
| Alignment Legend |
|---|
Aligned base mismatch/match (shaded by quality score): ATCG/ATCG < 3 ≤ ATCG/ATCG < 27 ≤ ATCG/ATCG < 32 ≤ ATCG/ATCG < 36 ≤ ATCG/ATCG |
Unaligned base: atcg Masked matching base: atcg Alignment gap: ‑ Deleted base: ‑ |
| Reads not counted as support for junction |
| read_name Not counted due to insufficient overlap past the breakpoint. |
| read_name Not counted due to not crossing MOB target site duplication. |