| New junction evidence | |||||||||||
|---|---|---|---|---|---|---|---|---|---|---|---|
| seq id | position | reads (cov) | reads (cov) | score | skew | freq | annotation | gene | product | ||
| * | ? | minE | = 1586789 | 64 (0.840) | 4 (0.060) | 3/92 | NT | 5.3% | intergenic (+351/‑33) | cysK/ptsH | cysteine synthase A, O‑acetylserine sulfhydrolase A subunit/phosphohistidinoprotein‑hexose phosphotransferase component of PTS system (Hpr) |
| ? | minE | = 1586812 | 84 (1.200) | intergenic (+374/‑10) | cysK/ptsH | cysteine synthase A, O‑acetylserine sulfhydrolase A subunit/phosphohistidinoprotein‑hexose phosphotransferase component of PTS system (Hpr) | |||||
TCGCGTCTGTTAAAAACTGGCGCTAACAATACAGGCTAAAGTCGAACCGCCAGGCTAGACTTTAGTTCCACAACACTAAACCTATAAGTTGGGGAAATACAATGTTCCAGCAAGAAGTTACCATTACCGCTCCGAACG > minE/1586721‑1586858 | tcgcgtcTGTTAAAAACTGGCGCTAACAATACAGGCTAAAGTCGAACCGCCAGGCTAGACTTTAGTTCcac < 1:1027064/71‑1 (MQ=255)tcgcgtcTGTTAAAAACTGGCGCTAACAATACAGGCTAAAGTCGAACCGCCAGGCTAGACTTTAGTTCcac < 1:2358142/71‑1 (MQ=255)tcgcgtcTGTTAAAAACTGGCGCTAACAATACAGGCTAAAGTCGAACCGCCAGGCTAGACTTTAGTTCcac < 1:2599166/71‑1 (MQ=255) gcgtcTGTTAAAAACTGGCGCTAACAATACAGGCTAAAGTCGAACCGCCAGGCTAGACTTTAGTTCCacaa > 1:1916900/1‑71 (MQ=255) tcTGTTAAAAACTGGCGCTAACAATACAGGCTAAAGTCGAACCGCCAGGCTAGACTTTAGTTCCACAacac < 1:4575063/71‑1 (MQ=255) tcTGTTAAAAACTGGCGCTAACAATACAGGCTAAAGTCGAACCGCCAGGCTAGACTTTAGTTCCACAacac < 1:204286/71‑1 (MQ=255) cTGTTAAAAACTGGCGCTAACAATACAGGCTAAAGTCGAACCGCCAGGCTAGACTTTAGTTCCACAacac > 1:1273419/1‑70 (MQ=255) tGTTAAAAACTGGCGCTAACAATACAGGCTAAAGTCGAACCGCCAGGCTAGACTTTAGTTCCACAACACt > 1:1978907/1‑70 (MQ=255) ttAAAAACTGGCGCTAACAATACAGGCTAAAGTCGAACCGCCAGGCTAGACTTTAGTTCCACAACACTaaa > 1:3121336/1‑71 (MQ=255) ttAAAAACTGGCGCTAACAATACAGGCTAAAGTCGAACCGCCAGGCTAGACTTTAGTTCCACAACACTaaa > 1:4254884/1‑71 (MQ=255) aaaaaCTGGCGCTAACAATACAGGCTAAAGTCGAACCGCCAGGCTAGACTTTAGTTCCACAACACTAAAcc > 1:4411167/1‑71 (MQ=255) aaaaCTGGCGCTAACAATACAGGCTAAAGTCGAACCGCCAGGCTAGACTTTAGTTCCACAACACTAAACCt < 1:3799742/71‑1 (MQ=255) aaCTGGCGCTAACAATACAGGCTAAAGTCGAACCGCCAGGCTAGACTTTAGTTCCACAACACTAAAc > 1:4322739/1‑67 (MQ=255) cTGGCGCTAACAATACAGGCTAAAGTCGAACCGCAAGGCTAGACTTTAGTTCCACAACACTAAAc > 1:1557835/1‑65 (MQ=255) gcgcTAACAATACAGGCTAAAGTCGAACCGCCAGGCTAGACTTTAGTTCCACAACACTAAACCTATAAGt < 1:83577/70‑1 (MQ=255) gcgcTAACAATACAGGCTAAAGTCGAACCGCCAGGCTAGACTTTAGTTCCACAACACTAAACCTATAAGt < 1:4340906/70‑1 (MQ=255) gcTAACAATACAGGCTAAAGTCGAACCGCCAGGCTAGACTTTAGTTCCACAACACTAAACCTATAAGTTgg > 1:4192331/1‑71 (MQ=255) tAACAATACAGGCTAAAGTCGAACCGCCAGGCTAGACTTTAGTTCCccaacttataggtttagtgttgtg > 1:4288071‑M1/1‑46 (MQ=255) aCAATACAGGCTAAAGTCGAACCGCCAGGCTAGACTTTAGTTCCACAACACTAAACCTATAAGTTGGgga > 1:3274237‑M2/1‑67 (MQ=255) aCAATACAGGCTAAAGTCGAACCGCCAGGCTAGACTTTAGTTCCACAACACTAAACCTATAAGTTGGgg > 1:4462340‑M2/1‑67 (MQ=255) aCAATACAGGCTAAAGTCGAACCGCCAGGCTAGACTTTAGTTCCACAACACTAAACCTATAAGTTGGgg > 1:2410543‑M2/1‑67 (MQ=255) cAATACAGGCTAAAGTCGAACCGCCAGGCTAGACTTTAGTTCCACAACACTAAACCTATAAGTTGGGGaaa < 1:896333/71‑1 (MQ=255) aaTACAGGCTAAAGTCGAACCGCCAGGCTAGACTTTAGTTCca > 1:3048527/1‑43 (MQ=255) aaTACAGGCTAAAGTCGAACCGCCAGGCTAGACTTTAGTTCCACAACACTaaa > 1:2720002/1‑53 (MQ=255) aaTACAGGCTAAAGTCGAACCGCCAGGCTAGACTTTAGTTCCACAACACTAAACCTATAAGTTGGGGaaa > 1:1898037/1‑70 (MQ=255) aaTACAGGCTAAAGTCGAACCGCCAGGCTAGACTTTAGTTCCACAACACTAAACCTATAAGTTGGGGaaa < 1:2521770/70‑1 (MQ=255) aTACAGGCTAAAGTCGAACCGCCAGGCTAGACTTTAGTTCCACAACACTAAACCTATAAGTTg < 1:1916655/63‑1 (MQ=255) tACAGGCTAAAGTCGAACCGCCAGGCTAGACTTTAGTTCCACAACACTAAACCTATAAGTTGGGGAAATa > 1:2804688/1‑70 (MQ=255) tACAGGCTAAAGTCGAACCGCCAGGCTAGACTTTAGTTCCACAACACTAAACCTATAAGTTGGGGAAATAc < 1:949238/71‑1 (MQ=255) cAGGCTAAAGTCGAACCGCCAGGCTAGACTTTAGTTCCACAACACTAAACCTATAAGTTGGGGAAATACaa < 1:1060993/71‑1 (MQ=255) gCTAAAGTCGAACCGCCAGGCTAGACTTTAGTTCCACAACACTAAACCTATAAGTTGGGGAAATAc < 1:4228811/66‑1 (MQ=255) tAAAGTCGAACCGCCAGGCTAGACTTTAGTTCCACAACACTaa < 1:587083/43‑1 (MQ=255) tAAAGTCGAACCGCCAGGCTAGACTTTAGTTCCACAACACTAAACCTATAAGTTGGgga > 1:3924874‑M2/1‑56 (MQ=255) tAAAGTCGAACCGCCAGGCTAGACTTTACTTCCACAACACTaa < 1:4440137/43‑1 (MQ=255) aaaGTCGAACCGCCAGGCTAGACTTTAGTTCCACAACACTAAACCTATAAGTTGGGGAAATACAATGTTc > 1:3185063/1‑70 (MQ=255) aaaGTCGAAACGCCAGGCTAGACTTTAGTTCCACAACACTACACCtata < 1:1575888/49‑1 (MQ=39) aaGTCGAACCGCCAGGCTAGACTTTAGTTCCACAACACTAAACCTATAAGTTGGGGAAATACAATGTTc < 1:53927/69‑1 (MQ=255) aaGTCGAACCGCCAGGCTAGACTTTAGTTCCACAACACTAAACCTATAAGTTGGGGAAATACAATGTTc < 1:2036/69‑1 (MQ=255) aaGTCGAACCGCCAGGCTAGACTTTAGTTCCACAACACTAAACCTATAAGTTGGGGAAATACAATGTTc > 1:2104507/1‑69 (MQ=255) gTCGAACCGCCAGGCTAGACTTTAGTTCCACAACACTAAACCTATAAGtt < 1:1759196/50‑1 (MQ=255) gTCGAACCGCCAGGCTAGACTTTAGTTCCACAACACTAAACCTATAAGTTGGGGAAATACAATGTTCCAg > 1:4368471/1‑70 (MQ=255) gTCGAACCGCCAGGCTAGACTTTAGTTCCACAACACTAAACCTATAAGTTGGGGAAATACAATGTTCCAg > 1:1426122/1‑70 (MQ=255) cGAACCGCCAGGCTAGACTTTAGTTCCACAACACTAAACCTATAAGTTGGGGAAATACAATGTTCCAg > 1:57809/1‑68 (MQ=255) gAACCGCCAGGCTAGACTTTAGTTCCACAACACTAAACCTATAAGTTGGGGAAATACAATGTTCCAGCaa < 1:2693735/70‑1 (MQ=255) gAACCGCCAGGCTAGACTTTAGTTCCACAACACTAAACCTATAAGTTGGGGAAATACAATGTTCCAGCaa < 1:724677/70‑1 (MQ=255) aaCCGCCAGGCTAGACTTTAGTTCCACAACACTAAACCTATAAGTTGGGGAAATACAATGTTCCAGCaaga < 1:4797/71‑1 (MQ=255) aCCGCCAGGCTAGACTTTAGTTCCACAACACTAAACCTATAAGTTGGGGAAATACAATGTTCCAGCaagaa < 1:1132683/71‑1 (MQ=255) aCCGCCAGGCTAGACTTTAGTTCCACAACACTAAACCTATAAGTTGGGGAAATACAATGTTCCAGCaag > 1:695402/1‑69 (MQ=255) gCCAGGCTAGACTTTAGTTCCACAACACTAAACCtata < 1:2057899/38‑1 (MQ=255) gCCAGGCTAGACTTTAGTTCCACAACACTAAACCTATAAGTTGGGGAAATACAATGTTCCAGCAAGAAGtt < 1:3972352/71‑1 (MQ=255) cAGGCTAGACTTTAGTTCCACAACACTAAACCTATAAGTTGGGGAAATACAATGTTCCAGCAAGAAGTTAc < 1:2773971/71‑1 (MQ=255) aGGCTAGACTTTAGTTCCACAACACTAAACCTATAAGTTGGGGAAATACAATGTTCCAGCAAGAAGTTAcc < 1:315455/71‑1 (MQ=255) gCTAGACTTTAGTTCCccaacttataggtttagtgttg < 1:804413‑M1/38‑23 (MQ=255) gCTAGACTTTAGTTCCccaacttataggtttagtgttg < 1:2377742‑M1/38‑23 (MQ=255) gCTAGACTTTAGTTCCACAACACTAAACCTATAAGTTGGGGAAATACAATGTTCCAGCAAGAAGTTACCAt > 1:1082267/1‑71 (MQ=255) gCTAGACTTTAGTTCCACAACACTAAACCTATAAGTTGGGGAAATACAATGTTCCAGCAAGAAGTTACCAt < 1:4329745/71‑1 (MQ=255) tAGACTTTAGTTCCccaacttataggtttagtgttgtg > 1:177627‑M1/1‑14 (MQ=255) tAGACTTTAGTTCCACAACACTAAACCTATAAGTTGGGGAAATACAATGTTCCAGCAAGAAGt > 1:2338598/1‑63 (MQ=255) tAGACTTTAGTTCCACAACACTAAACCTATAAGTTGGGGAAATACAATGTTCCAGCAAGAAGt > 1:2994302/1‑63 (MQ=255) aGACTTTAGTTCCACAACACTAAACCTATAAGTTGGGGAAATACAATGTTCCAGCAAGAAGTTACCATTAc > 1:490139/1‑71 (MQ=255) aGACTTTAGTTCCACAACACTAAACCTATAAGTTGGGGAAATACAATGTTCCAGCAAGAAGTTACCATTAc > 1:2630477/1‑71 (MQ=255) gACTTTAGTTCCACAACACTAAACCTATAAGTTGGGGAAATACAATGTTCCAGCAAGAAGTTACCATTa < 1:39071/69‑1 (MQ=255) gACTTTAGTTCCACAACACTAAACCTATAAGTTGGGGAAATACAATGTTCCAGCAAGAAGTTACCATTa < 1:4543036/69‑1 (MQ=255) cTTTAGTTCCACAACACTAAACCTATAAGTTGGGGAAATACAATGTTCCAGCAAGAAGTTACCa > 1:3188053/1‑64 (MQ=255) tttAGTTCCACAACACTAAACCTATAAGTTGGGGAAATACAATGTTCCAGCaa < 1:1604209/53‑1 (MQ=255) tttAGTTCCACAACACTAAACCTATAAGTTGGGGAAATACAATGTTCCAGCAAGAAGTTAc < 1:3180473/61‑1 (MQ=255) tttAGTTCCACAACACTAAACCTATAAGTTGGGGAAATACAATGTTCCAGCAAGAAGTTACCATTACCGCt > 1:909585/1‑71 (MQ=255) tttAGTTCCACAACACTAAACCTATAAGTTGGGGAAATACAATGTTCCAGCAAGAAGTTACCATTACCGCt > 1:4281478/1‑71 (MQ=255) tttAGTTCCACAACACTAAACCTATAAGTTGGGGAAATACAATGTTCCAGCAAGAAGTTACCATTACCGCt > 1:3810068/1‑71 (MQ=255) tAGTTCCACAACACTAAACCTATAAGTTGGGGAAATACAATGTTCCAGCAAGAAGt > 1:3586262/1‑56 (MQ=255) tAGTTCCACAACACTAAACCTATAAGTTGGGGAAATACAATGTTCCAGCAAGAAGTTAc > 1:3572506/1‑59 (MQ=255) tAGTTCCACAACACTAAACCTATAAGTTGGGGAAATACAATGTTCCAGCAAGAAGTTACCATTACCGCt < 1:105805/69‑1 (MQ=255) tAGTTCCACAACACTAAACCTATAAGTTGGGGAAATACAATGTTCCAGCAAGAAGTTACCATTACCGCTcc > 1:1719303/1‑71 (MQ=255) tAGTTCCACAACACTAAACCTATAAGTTGGGGAAATACAATGTTCCAGCAAGAAGTTACCATTACCGCTcc > 1:1162646/1‑71 (MQ=255) tAGTTCCACAACACTAAACCTATAAGTTGGGGAAATACAATGTTCCAGCAAGAAGTTACCATTACCGCTcc > 1:4688401/1‑71 (MQ=255) aGTTCCACAACACTAAACCTATAAGTTGGGGAAATACAATg > 1:1369139/1‑41 (MQ=255) aGTTCCACAACACTAAACCTATAAGTTGGGGAAATACAATGTTCCAGCAAGAAGTTACCATTACCGCTcc > 1:3257704/1‑70 (MQ=255) gTTCCACAACACTAAACCTATAAGTTGGGGAAATACAATGTTCCAGCAAGAAGTTAc < 1:4698331/57‑1 (MQ=255) ttCCACAACACTAAACCTATAAGTTGGGGAAATAc < 1:3196274/35‑1 (MQ=255) ttCCACAACACTAAACCTATAAGTTGGGGAAATAc < 1:3033056/35‑1 (MQ=255) ttCCACAACACTAAACCTATAAGTTGGGGAAATACAATGTTCCAGCAAGAAGTTAc < 1:312145/56‑1 (MQ=255) ttCCACAACACTAAACCTATAAGTTGGGGAAATACAATGTTCCAGCAAGAAGTTACCAtt < 1:58279/60‑1 (MQ=255) ttCCACAACACTAAACCTATAAGTTGGGGAAATACAATGTTCCAGCAAGAAGTTACCAtt < 1:576357/60‑1 (MQ=255) ttCCACAACACTAAACCTATAAGTTGGGGAAATACAATGTTCCAGCAAGAAGTTACCATTACCGCTCCg < 1:1003667/69‑1 (MQ=255) ttCCACAACACTAAACCTATAAGTTGGGGAAATACAATGTTCCAGCAAGAAGTTACCATTACCGCTCCg < 1:3337937/69‑1 (MQ=255) ttCCACAACACTAAACCTATAAGTTGGGGAAATACAATGTTCCAGCAAGAAGTTACCATTACCGCTCCGaa > 1:3397475/1‑71 (MQ=255) tCCccaacttataggtttagtgttgtggaactaaagtctagcctggcggttcgactttagcctgtattgt > 1:3274237‑M1/1‑3 (MQ=255) tCCccaacttataggtttagtgttgtggaactaaagtctagcctggcggttcgacttta > 1:3924874‑M1/1‑3 (MQ=255) ccccaacttataggtttagtgttgtggaactaaagtctagcctggcggttcgactttagcctgtattgt > 1:4462340‑M1/1‑2 (MQ=255) ccccaacttataggtttagtgttgtggaactaaagtctagcctggcggttcgactttagcctgtattgt > 1:2410543‑M1/1‑2 (MQ=255) ccACAACACTAAACCTATAAGTTGGGGAAATACAAt > 1:657362/1‑36 (MQ=255) ccACAACACTAAACCTATAAGTTGGGGAAATACAATGTTCCAGCAAGAAGTTACCATTACCGCTCCGAACg > 1:2400802/1‑71 (MQ=255) cacaACACTAAACCTATAAGTTGGggaactaaagtctagcctggcggttcgactttagcctgtattgtta > 1:4288071‑M2/1‑24 (MQ=255) cacaACACTAAACCTATAAGTTGGggaactaaagtcta > 1:177627‑M2/1‑24 (MQ=255) cacaACACTAAACCTATAAGTTGGGGAAATACAATGTTCCAGCAAGAAGTTACCATTACCGCTCCGAACg < 1:4265864/70‑1 (MQ=255) | TCGCGTCTGTTAAAAACTGGCGCTAACAATACAGGCTAAAGTCGAACCGCCAGGCTAGACTTTAGTTCCACAACACTAAACCTATAAGTTGGGGAAATACAATGTTCCAGCAAGAAGTTACCATTACCGCTCCGAACG > minE/1586721‑1586858 |
| Alignment Legend |
|---|
Aligned base mismatch/match (shaded by quality score): ATCG/ATCG < 3 ≤ ATCG/ATCG < 21 ≤ ATCG/ATCG < 32 ≤ ATCG/ATCG < 36 ≤ ATCG/ATCG |
Unaligned base: atcg Masked matching base: atcg Alignment gap: ‑ Deleted base: ‑ |
| Reads not counted as support for junction |
| read_name Not counted due to insufficient overlap past the breakpoint. |
| read_name Not counted due to not crossing MOB target site duplication. |