| Predicted mutation | |||||||
|---|---|---|---|---|---|---|---|
| evidence | seq id | position | mutation | freq | annotation | gene | description |
| RA | minE | 2,797,686 | A→G | 5.1% | L357L (TTA→TTG) | dinF → | DNA‑damage‑inducible SOS response protein |
| Read alignment evidence... | |||||||||||
|---|---|---|---|---|---|---|---|---|---|---|---|
| seq id | position | ref | new | freq | score (cons/poly) | reads | annotation | genes | product | ||
| * | minE | 2,797,686 | 0 | A | G | 5.1% | 324.0 / 6.3 | 116 | L357L (TTA→TTG) | dinF | DNA‑damage‑inducible SOS response protein |
| Reads supporting (aligned to +/- strand): ref base A (49/61); new base G (2/4); total (51/65) | |||||||||||
| Fisher's exact test for biased strand distribution p-value = 6.93e-01 | |||||||||||
| Kolmogorov-Smirnov test that lower quality scores support variant p-value = 1.00e+00 | |||||||||||
Only 100 of 121 total aligned reads displayed.
CAGTCGGGGATCGTAGCGTTACTGTTTTCGGTGGTTTATTTGCTGGCTGGGGAACACATCATTGCGTTACTGACGTCGTTAACCCAGATTCAGCAGCTGGCTGACCGCTATCTTATCTGGCAGGTGATTTTGCCGGTGG > minE/2797618‑2797756 | cAGTCGGGGATCGTAGCGTTACTGTTTTCGGTGGTTTATTTGCTGGCTGGGGAACACATCATTGCGTTACt < 1:843825/71‑1 (MQ=255) gTCGGGGATCGTAGCGTTACTGTTTTCGGTGGTTTATTTGCTGGCTGGGGAACACATCATTGCGTTACTGa < 1:3698106/71‑1 (MQ=255) ggggATCGTAGCGTTACTGTTTTCGGTGGTTTATTTGCTGGCTGGGGAACACATCATTGCGTTACTGAcgt > 1:2543010/1‑71 (MQ=255) gggATCGTAGCGTTACTGTTTTCGGTGGTTTATTTGCTGGCTGGGGAACACATCATTGCGTTAc < 1:722613/64‑1 (MQ=255) ggATCGTAGCGTTACTGTTTTCGGTGGTTTATTTGCTGGCTGGGGAACACATCATTGCGTTACTGAcgtcg < 1:237560/71‑1 (MQ=255) gATCGTAGCGTTACTGTTTTCGGTGGTTTATTTGCTGGTTGGGGAACACATCATTGCGTTACTGAcgtcgt > 1:810792/1‑71 (MQ=255) gATCGTAGCGTTACTGTTTTCGGTGGTTTATTTGCTGGCTGGGGAACACATCATTGCGTTACTg > 1:3356289/1‑64 (MQ=255) gATCGTAGCGTTACTGTTTTCGGTGGTTTATTTGCTGGCTGGGGAACACATCATTGCGTTACTGAcgtcgt < 1:57946/71‑1 (MQ=255) gATCGTAGCGTTACTGTTTTCGGTGGTTTATTTGCTGGCTGGGGAACACATCATTGCGTTACTGAcgtcgt < 1:1840794/71‑1 (MQ=255) aTCGTAGCGTTACTGTTTTCGGTGGTTTATTTGCTGGCTGGGGAACACATCATTGCGTTACTGACGTCGtt < 1:923067/71‑1 (MQ=255) gTAGCGTTACTGTTTTCGGTGGTTTATTTGCTGGCTGGGGAACACATCATTGCGTTACTGACGTCGTTAAc > 1:2504516/1‑71 (MQ=255) tAGCGTTACTGTTTTCGGTGGTTTATTTGCTGGCTGGGGAACACATCATTGCGTTACTGACGTCGTTAAcc > 1:4093387/1‑71 (MQ=255) tAGCGTTACTGTTTTAGGTGGTTTATTTGCTGGCTGGGGAACACATCATTGCGTTACTGAcgtc < 1:4132769/64‑1 (MQ=255) gCGTTACTGTTTTCGGTGGTTTATTTGCTGGCTGGGGAACACATCATTGCGTTACTGAcgtcgt > 1:1017029/1‑64 (MQ=255) gCGTTACTGTTTTCGGTGGTTTATTTGCTGGCTGGGGAACACATCATTGCGTTACTGACGTCGTTAACCCa < 1:2233636/71‑1 (MQ=255) cGTTACTGTTTTCGGTGGTTTATTTGCTGGCTGGGGAACACATCATTGCGTTACTGACGTCGTTAACCCa < 1:1093882/70‑1 (MQ=255) gTTACTGTTTTCGGTGGTTTATTTGCTGGCTGGGGAACACATCATTGCGTTACTGACGTCGTTAAcc > 1:3835932/1‑67 (MQ=255) gTTACTGTTTTCGGTGGTTTATTTGCTGGCTGGGGAACACATCATTGCGTTACTGACGTCGTTAACCCAGa < 1:487272/71‑1 (MQ=255) ttACTGTTTTCGGTGGTTTATTTGCTGGCTGGGGAACACATCATTGCGTTACTGACGTCGTTAACCCAGAt < 1:1679453/71‑1 (MQ=255) tACTGTTTTCGGTGGTTTATTTGCTGGCTGGGGAACACATCATTGCGTTACTGACGTCGTTAACCCAGAtt > 1:1298561/1‑71 (MQ=255) aCTGTTTTCGGTGGTTTATTTGCTGGCTGGGGAACACATCATTGCGTTACTGACGTCGTTAACCCAGAtt < 1:1981191/70‑1 (MQ=255) aCTGTTTTCGGTGGTTTATTTGCTGGCT‑‑GGAACACATCATTGCGTTACTGACGTCGTTAACCCAGATTcag > 1:4330107/1‑71 (MQ=255) cTGTTTTCGGTGGTTTATTTGCTGGCTGGGGAACACATCATTGCGTTACTGACGTCGTTAACCCAGATTca < 1:4329445/71‑1 (MQ=255) tGTTTTCGGTGGTTTATTTGCTGGCTGGGGAACACATCATTGCGTTACTGACGTCGtt < 1:2201484/58‑1 (MQ=255) ttttCGGTGGTTTATTTGCTGGCTGGGGAACACATCATTGCGTTAc > 1:1123534/1‑46 (MQ=255) ttttCGGTGGTTTATTTGCTGGCTGGGGAACACATCATTGCGTTAc > 1:3543946/1‑46 (MQ=255) ttttCGGTGGTTTATTTGCTGGCTGGGGAACACATCATTGCGTTACTGAcgtcg > 1:23769/1‑54 (MQ=255) ttttCGGTGGTTTATTTGCTGGCTGGGGAACACATCATTGCGTTACTGACGTCGTTAACCCAGa < 1:1136429/64‑1 (MQ=255) ttttCGGTGGTTTATTTGCTGGCTGGGGAACACATCATTGCGTTACTGACGTCGTTAACCCAGATTcagc < 1:3439404/70‑1 (MQ=255) ttttCGGTGGTTTATTTGCTGGCTGGGGAACACATAATTGCGTTACTGACGTCGTTAACCCAGATTcagca < 1:2424452/71‑1 (MQ=255) ttCGGTGGTTTATTTGCTGGCTGGGGAACACATCATTGCGTTACTGACGTCGTTAACCCAGATTCagcagc > 1:3611607/1‑71 (MQ=255) ttCGGTGGTTTATTTGCTGGCTGGGGAACACATCATTGCGTTACTGACGTCGTTAACCCAGATTCagcagc > 1:3967236/1‑71 (MQ=255) tCGGTGGTTTATTTGCTGGCTGGGGAACACATCATTGCGTTACTGACGTCGtt < 1:389593/53‑1 (MQ=255) cGGTGGTTTATTTGCTGGCTGGGGAACACATCATTGCGTTACTGACGTCGTTAACCCAGATTca > 1:1508348/1‑64 (MQ=255) cGGTGGTTTATTTGCTGGCTGGGGAACACATCATTGCGTTACTGACGTCGTTAACCCAGATTCAGCAgct < 1:3850054/70‑1 (MQ=255) ggtggtTTATTTGCTGGCTGGGGAACACATCATTGCGTTACTGACGTCGTTAACCCAGATTCAGCAgctgg > 1:2373284/1‑71 (MQ=255) ggtggtTTATTTGCTGGCTGGGGAACACATCATTGCGTTACTGACGTCGTTAACCCAGATTCAGCAgctgg < 1:390955/71‑1 (MQ=255) ggtggtTTATTTGCTGGCTGGGGAACACATCATTGCGTTACTGACGTCGTTAACCCAGATTCAGCAgctg < 1:1710916/70‑1 (MQ=255) ggtggtTTATTTGCTGGCTGGGGAACACATCATTGCGTTACTGACGTCGTTAACCCAGATTCAGCAgctg < 1:4416063/70‑1 (MQ=255) tggtTTATTTGCTGGCTGGGGAACACATCATTGCGTTACTGACGTCGtt < 1:1004924/49‑1 (MQ=255) tggtTTATTTGCTGGCTGGGGAACACATCATTGCGTTACTGACGTCGTTAACCCAGATTCAGCAgctggct < 1:3750381/71‑1 (MQ=255) tggtTTATTTGCTGGCAGGGGAACACATCATTGCGTTGCTGACGTCGTTAACCCAGATTCAGCAgctggct > 1:457122/1‑71 (MQ=255) gtTTATTTGCTGGCTGGGGAACACATCATTGCGTTACTGACGTCGTTaa < 1:1534979/49‑1 (MQ=255) gtTTATTTGCTGGCTGGGGAACACATCATTGCGTTACTGACGTCGTTAACCCAGATTCAGCAgctggctg < 1:886723/70‑1 (MQ=255) gtTTATTTGCTGGCTGGGGAACACATCATTGCGTTACTGACGTCGTTAACCCAGATTCAGCAGCTGGCTGa > 1:253049/1‑71 (MQ=255) tttATTTGCTGGCTGGGGAACACATCATTGCGTTAGTGAcgtc < 1:591728/43‑1 (MQ=255) tttATTTGCTGGCTGGGGAACACATCATTGCGTTACt < 1:1559786/37‑1 (MQ=255) tttATTTGCTGGCTGGGGAACACATCATTGCGTTACTg < 1:795621/38‑1 (MQ=255) tttATTTGCTGGCTGGGGAACACATCATTGCGTTACTGACGTCGTTAACCCAGATTc < 1:3595303/57‑1 (MQ=255) ttATTTGCTGGCTGGGGAACACATCATTGCGTTACTGa > 1:3358000/1‑38 (MQ=255) ttATTTGCTGGCTGGGGAACACATCATTGCGTTACTGACGTCGTTAAcc < 1:4144157/49‑1 (MQ=255) ttATTTGCTGGCTGGGGAACACATCATTGCGTTACTGACGTCGTTAAcc < 1:1181020/49‑1 (MQ=255) ttATTTGCTGGCTGGGGAACACATCATTGCGTTACTGACGTCGTTAACCCAGATTCAGCAGCTGGCTGAcc > 1:720709/1‑71 (MQ=255) tATTTGCTGGCTGGGGAACACATCATTGCGTTACTGACGTCGTTAACCCAGATTCagcagc > 1:2370493/1‑61 (MQ=255) tATTTGCTGGCTGGGGAACACATCATTGCGTTACTGACGTCGTTAACCCAGATTCAGCAGCTGGCTGa > 1:4544239/1‑68 (MQ=255) aTTTGCTGGCTGGGGAACACATCATTGCGTTACTGACGTCGTTAACCCAGATTCAGCAGCTGGCTGCCCGc > 1:276576/1‑71 (MQ=255) aTTTGCTGGCTGGGGAAAACATCATTGCGTTACTGACGTCGTTAACCCAGATTCAGCAGCTGGCTGACCg < 1:3562592/70‑1 (MQ=255) tttGCTGGCTGGGGAACACATCATTGCGTTACTGACGTCGTTAACCCAGATTCAGCAGCTGGCTGAcc < 1:1535823/68‑1 (MQ=255) ttactggctggGGAACACATCATTGCGTTACTGACGTCGTTAACCCAGATTCAGCAGCTGGCTGACCGCta > 1:2012664/4‑71 (MQ=255) ttGCTGGCTGGGGAACACATCATTGCGTTACTGACGTCGTTAACCCAGATTCAGCAGCTGGCTGACCGCta > 1:1508941/1‑71 (MQ=255) ttGCTGGCTGGGGAACACATCATTGCGTTACTGACGTCGTTAACCCAGATTCAGCAGCTGGCTGACCGCt < 1:2640739/70‑1 (MQ=255) tGCTGGCTGGGGAACACATCATTGCGTTACTGACGTCGTTaa > 1:1993531/1‑42 (MQ=255) tGCTGGCTGGGGAACACATCATTGCGTTACTGACGTCGTTAACCCAGATTCAGCAGCTGGCTGACCGCta < 1:3027513/70‑1 (MQ=255) gctggctgGGGAACACATCATTGCGTTACTGACGTCGTTAACCCAGATTCAGCAGCTGGCTGACCGCtatc > 1:2260311/1‑71 (MQ=255) gctggctgGGGAACACATCATTGCGTTACTGACGTCGTTAACCCAGATTCAGCAGCTGGCTGACCGCtatc > 1:1794974/1‑71 (MQ=255) ctggctggGGAACACATCATTGCGTTACTGACGTCGTTAACCCAGATTCAGCAGCTGGCTGACCGCtatc < 1:573483/70‑1 (MQ=255) tggctggGGAACACATCATTGCGTTACTGACGTCGTTAACCCAGATTCAGCAGCTGGCTGACCGCt < 1:3152686/66‑1 (MQ=255) ggctggGGAACACATCATTGCGTTACTGACGTCGTTAACCAAGATTCAGCAGCTGGCTGACCGCtatctta > 1:813774/1‑71 (MQ=255) gctggGGAACACATCATTGCGTTACTGACGTCGTTAACCCAGATTCAGCAGCTGGCTGACCGCtatctta < 1:1731185/70‑1 (MQ=255) gctggGGAACACATCATTGCGTTACTGACGTCGTTAACCCAGATTCAGCAGCTGGCTGACCGCtatctt < 1:4463293/69‑1 (MQ=255) gctggGGAACACATCATTGCGTTACTGACGTCGTTAACCCAGATTCAGCAGCTGGCTGACCGCtatctt < 1:4163421/69‑1 (MQ=255) gctggGGAACACATCATTGCGTTACTGACGTCGTTAACCCAGATTCAGCAGCTGGCTGACCGCtatctt < 1:3390678/69‑1 (MQ=255) gggAACACATCATTGCGTTACTGACGTCGTTAACCCAGATTCAGCAGCTGGCTGACCGCTATCTTATCTgg > 1:4628377/1‑71 (MQ=255) aaCACATCATTGCGTTACTGACGTCGTTAACCCAGAtt < 1:4266610/38‑1 (MQ=255) acacATCATTGCGTTACTGACGTCGTTAACCCAGATTCAGCAGCTGGCTGACCGCTATCTTATCTGGCAgg > 1:4565969/1‑71 (MQ=255) cacaTCATTGCGTTACTGACGTCGTTAACCCAGATTCAGCAgctggctg < 1:759191/49‑1 (MQ=255) cacaTCATTGCGTTACTGACGTCGTTAACCCAGATTCAGCAGCTGGCTGACCGCTATCTTATCTGGCAGGt > 1:1412722/1‑71 (MQ=255) acaTCATTGCGTTGCTGACGTCGTTAACCCAGATTCAGCAGCTGGCTGACCGCTATCTTATCTGGCAGGTg < 1:855133/71‑1 (MQ=255) catcatTGCGTTACTGACGTCGTTAACCCAGATTcagc < 1:90256/38‑1 (MQ=255) catcatTGCGTTACTGACGTCGTTAACCCAGATTCAGCAgctggctg < 1:1491992/47‑1 (MQ=255) catcatTGCGTTACTGACGTCGTTAACCCAGATTCAGCAGCTGGCTGACCGCTATCTTATCTGGCAGGTGa > 1:618374/1‑71 (MQ=255) atcatTGCGTTACTGACGTCGTTAACCCAGATTCAGCAGCTGGCTGAc > 1:343032/1‑48 (MQ=255) atcatTGCGTTACTGACGTCGTTAACCCAGATTCAGCAGCTGGCTGACCGCtatc > 1:1733958/1‑55 (MQ=255) atcatTGCGTTACTGACGTCGTTAACCCAGATTCAGCAGCTGGCTGACCGCTATCTTATCTGGCAGGTGAt > 1:2762354/1‑71 (MQ=255) atcatTGCGTTACTGACGTCGTTAACCCAGATTCAGCAGCTGGCTGACCGCTATCTTATCTGGCAGGTGAt > 1:877268/1‑71 (MQ=255) catTGCGTTACTGACGTCGTTAACCCAGATTCAGCAGCTGGCTGACCGCTATCTTATCTGGCAGGTGAttt > 1:1381265/1‑71 (MQ=255) atTGCGTTACTGAGGTCGTTAACCCAGATTCAGCAGCTGGCTGACCGCTATCTTATCTGGCAg > 1:402126/1‑63 (MQ=255) atTGCGTTACTGACGTCGTTAACCCAGATTCAGCAGCTGGCTGACCGCta > 1:3958850/1‑50 (MQ=255) atTGCGTTACTGACGTCGTTAACCCAGATTCAGCAGCTGGCTGACCGCTATCTTATCTGGCAGGTGAtttt < 1:2376983/71‑1 (MQ=255) atTGCGTTACTGACGTCGTTAACCCAGATTCAGCAGCTGGCTGACCGCTATCTTATCTGGCAGGTGAtttt > 1:3528728/1‑71 (MQ=255) atTGCGTTACTGACGTAGTTAACCCAGATTCAGCAGCTGGCTGACCGCtatctt < 1:2887492/54‑1 (MQ=255) gCGTTACTGACGTCGTTAACCCAGATTCAGCAGCTGGCTGACCGCTATGTTATCTGGCAGGTGATTTTGcc > 1:4548819/1‑71 (MQ=255) gCGTTACTGACGTCGTTAACCCAGATTCAGCAGCTGGCTGACCGCTATCTTATCTGGCAGGTGATTTTGcc > 1:2219074/1‑71 (MQ=255) cGTTGCTGACGTCGTTAACCCAGATTCAGCAGCTGGCTGACCGCTATCTTATCTGGCAGGTGATTTTGCCg < 1:2759706/71‑1 (MQ=255) ttACTGACGTCGTTAACCCAGATTCAGCAGCTGGCTGACCGCTATCTTATCTGGCAGGTGATTTTGCCggt < 1:2888463/71‑1 (MQ=255) tACTGACGTCGTTAACCCAGATTCAGCAGCTGGCTGACCGCTATCTTATCTGGCAGGTGATTTTGCCggtg > 1:3934854/1‑71 (MQ=255) tACTGACGTCGTTAACCCAGATTAAGCAGCTGGCTGACCGCta > 1:2153397/1‑43 (MQ=255) aCTGACGTCGTTAACCCAGATTCAGCAGCTGGCTGACCGCTATCTTATCTGGCAGGTGATTTTGCCggtgg > 1:2704962/1‑71 (MQ=255) aCTGACGTCGTTAACCCAGATTCAGCAGCTGGCTGACCGCTATCTTATCTGGCAGGTGATTTTGCCggtg > 1:650579/1‑70 (MQ=255) aCTGACGTCGTTAACCCAGATTCAGCAGCTGGCTGACCGCTATCTTATCTGGCAGGTGATTTTGCCggtg < 1:322874/70‑1 (MQ=255) | CAGTCGGGGATCGTAGCGTTACTGTTTTCGGTGGTTTATTTGCTGGCTGGGGAACACATCATTGCGTTACTGACGTCGTTAACCCAGATTCAGCAGCTGGCTGACCGCTATCTTATCTGGCAGGTGATTTTGCCGGTGG > minE/2797618‑2797756 |
| Alignment Legend |
|---|
Aligned base mismatch/match (shaded by quality score): ATCG/ATCG < 3 ≤ ATCG/ATCG < 14 ≤ ATCG/ATCG < 32 ≤ ATCG/ATCG < 36 ≤ ATCG/ATCG |
Unaligned base: atcg Masked matching base: atcg Alignment gap: ‑ Deleted base: ‑ |