| Predicted mutation | |||||||
|---|---|---|---|---|---|---|---|
| evidence | seq id | position | mutation | freq | annotation | gene | description |
| RA | minE | 2,960,872 | G→A | 52.2% | intergenic (+322/+98) | yjjV → / ← yjjW | predicted DNase/predicted pyruvate formate lyase activating enzyme |
| Read alignment evidence... | |||||||||||
|---|---|---|---|---|---|---|---|---|---|---|---|
| seq id | position | ref | new | freq | score (cons/poly) | reads | annotation | genes | product | ||
| * | minE | 2,960,872 | 0 | G | A | 52.2% | ‑6.1 / 28.2 | 23 | intergenic (+322/+98) | yjjV/yjjW | predicted DNase/predicted pyruvate formate lyase activating enzyme |
| Reads supporting (aligned to +/- strand): ref base G (7/4); new base A (4/8); total (11/12) | |||||||||||
| Fisher's exact test for biased strand distribution p-value = 2.20e-01 | |||||||||||
| Kolmogorov-Smirnov test that lower quality scores support variant p-value = 1.00e+00 | |||||||||||
ATGCGACGCTTGTCGCGTCTTATCATGCCTACAGGTTTGTGCCGAACCGTAGGCCGGATAAGGCGTTCGCGCCGCATCCGGCAGTTGGCGCACAATGCCTGATGCGACGCTTGACGCGTCTTATCAGGCCTACAAGTCTGT > minE/2960802‑2960942 | aTGCGACGCTTGTCGCGTCTTATCATGCCTACAGGTTTGTGCCGAACCGTAGGCCGGATAAGGCGTTcgcg < 1:3555367/71‑1 (MQ=255) gACGCTTGTCGCGTCTTATCATGCCTACAGGTTTGTGCCGAACCGTAGGCCGGATAAGGCGTTCGcgccg > 1:3320024/1‑70 (MQ=255) gTCTTATCATGCCTACAGGTTTGTGCCGAACCGTAGGCCGGATACGGCGTTCGCGCCGCATCCGGCAGTTg > 1:3348384/1‑71 (MQ=21) gTCTTATCATGCCTACAGGTTTGTGCCGAACCGTAGGCCGGATAAGGCGTTCGCACCGCATCCGGCAGTTg < 1:1302991/71‑1 (MQ=21) aTCATGCCTACAGGTTTGTGCCGAACCGTAGGCCGGATAAGGCGTTCGCGCCGCATCCGGCAGTTGGCGca > 1:4440693/1‑71 (MQ=34) aTCATGCCTACAGGTTTGTGCCGAACCGTAGGCCGGATAAGGCGTTCGCACCGCATCCGGCAGTTGgcgc < 1:3419196/70‑1 (MQ=25) tCATGCCTACAGGTTTGTGCCGAACCGTAGGCCGGATAAGGCGTTCGCACCGCATCCGGCAGTTGGCGcac < 1:4613820/71‑1 (MQ=21) tCATGCCTACAGGTTTGTGCCGAACCGTAGGCCGGATAAGGCGTTCGCACCGCATCCGGCAGTTGGCGca < 1:2703058/70‑1 (MQ=25) aTGCCTACAGGTTTGTGCCGAACCGTAGGCCGGATAAGGCGTTCGCGCCGCATCCGGCAGTTGGCGCACaa > 1:486007/1‑71 (MQ=34) tGCCTACAGGTTTGTGCCGAACCGTAGGCCGGATAAGGCGTTCGCGCCGCATCCGGCAGTT‑GCGCACAATg < 1:2276634/71‑1 (MQ=255) cAGGTTTGTGCCGAACCGTAGGCCGGATAAGGCGTTCGCGCCGCATCCGGCAGTTGGCGCACAATGc > 1:1131422/1‑67 (MQ=35) cAGGTTTGTGCCGAACCGTAGGCCGGATAAGGCGTTCGCGCCGCATCCGGCAGTTGGCGCACAATGCCTGa > 1:2694000/1‑71 (MQ=34) gTTTGTGCCGAACCGTAGGCCGGATAAGGCGTTCGCGCCGCATCCGGCAGTTGGCGCACAATGCCTGATGc > 1:2277240/1‑71 (MQ=34) ttGTGCCGAACCGTAGGCCGGATAAGGCGTTCGCACCGCATCCGGCAGTTGGCGCACAATGCCTGATGCGa > 1:2259530/1‑71 (MQ=21) tgCCGAACCGTAGGCCGGATAAGGCGTTCGCACCGCATc > 1:1685053/1‑39 (MQ=255) ccGAACCGTAGGCCGGATAAGGCGTTCGCACCGCATCCGGCAGTTGGCGCACAATGCCTGATGCGACGCtt < 1:4183764/71‑1 (MQ=21) gAACCGTAGGCCGGATAAGGCGTTCGCACCGCATCCGGCAGTTGGCGCACAATGCCTGATGCGACGCTTg < 1:2544398/70‑1 (MQ=25) aaCCGTAGGCCGGATAAGGCGTTCGCACCGCATCCGGCAGTTGGCGCACAATGCCTGATGCGACGCTTGAc < 1:1714494/71‑1 (MQ=255) tAGGCCGGATAAGGCGTTCGCGCCGCATCCGGCAGTTGGCGCACAATGCCTGATGCGACGCTTGACGCGTc < 1:2242374/71‑1 (MQ=39) gCCGGATAAGGCGTTCGCACCGCATCCGGCAGTTGGCGCACAATGCCTGATGCGACGCTTGACGCGTCTTa < 1:3472085/71‑1 (MQ=255) ccGGATAAGGCGTTCGCGCCGCATCCGGCAGTTGGCGCACAATGCCTGATGCGACGCTTGACGCGTCTTAt < 1:1710864/71‑1 (MQ=39) cGGATAAGGCGTTCGCGCCGCATCCGGCAGTTGGCGCACAATGCCTGATGCGACGCTTGACGCGTCTTAt < 1:4377803/70‑1 (MQ=40) gATAAGGCGTTCGCACCGCATCCGGCAGTTGGCGCACAATGCCTGATGCGACGCTTGACGCGTCTTATCa > 1:712797/1‑70 (MQ=255) tAAGGCGTTCGCACCGCATCCGGCAGTTGGCGCACAATGCCTGATGCGACGCTTGACGCGTCTTATCAGGc > 1:4075436/1‑71 (MQ=255) aaGGCGTTCGCGCCGCATCCGGCAGTTGGCGCACAATGCCTGATGCGACGCTTGACGCGTCTTATCAGGcc > 1:210371/1‑71 (MQ=255) cgcaCCGCATCCGGCAGTTGGCGCACAATGCCTGATGCGACGCTTGACGCGTCTTATCAGGCCTACAAGt < 1:3348441/70‑1 (MQ=255) cgcaCCGCATCCGGCAGTTGGCGCACAATGCCTGATGCGACGCTTGACGCGTCTTATCAGGCCTACAAGTc > 1:3535173/1‑71 (MQ=255) gcgcCGCATCCGGCAGTTGGCGCACAATGCCTGATGCGACGCTTGACGCGTCTTATCAGGCCTACAAGTCt > 1:3262006/1‑71 (MQ=40) gccgcATCCGGCAGTTGGCGCACAATGCCTGATGCGACGCTTGACGCGTCTTATCAGGCCTACAAGTCtgt < 1:4028997/71‑1 (MQ=39) | ATGCGACGCTTGTCGCGTCTTATCATGCCTACAGGTTTGTGCCGAACCGTAGGCCGGATAAGGCGTTCGCGCCGCATCCGGCAGTTGGCGCACAATGCCTGATGCGACGCTTGACGCGTCTTATCAGGCCTACAAGTCTGT > minE/2960802‑2960942 |
| Alignment Legend |
|---|
Aligned base mismatch/match (shaded by quality score): ATCG/ATCG < 3 ≤ ATCG/ATCG < 14 ≤ ATCG/ATCG < 32 ≤ ATCG/ATCG < 36 ≤ ATCG/ATCG |
Unaligned base: atcg Masked matching base: atcg Alignment gap: ‑ Deleted base: ‑ |