| Predicted mutation | |||||||
|---|---|---|---|---|---|---|---|
| evidence | seq id | position | mutation | freq | annotation | gene | description |
| RA | minE | 1,348,785 | G→A | 6.3% | G478G (GGC→GGT) | asmA ← | predicted assembly protein |
| Read alignment evidence... | |||||||||||
|---|---|---|---|---|---|---|---|---|---|---|---|
| seq id | position | ref | new | freq | score (cons/poly) | reads | annotation | genes | product | ||
| * | minE | 1,348,785 | 0 | G | A | 6.3% | 394.8 / 10.6 | 126 | G478G (GGC→GGT) | asmA | predicted assembly protein |
| Reads supporting (aligned to +/- strand): ref base G (60/58); new base A (4/4); total (64/62) | |||||||||||
| Fisher's exact test for biased strand distribution p-value = 1.00e+00 | |||||||||||
| Kolmogorov-Smirnov test that lower quality scores support variant p-value = 8.56e-01 | |||||||||||
Only 100 of 131 total aligned reads displayed.
ACGTCAAATCGGTGGTAAAGCGGTCAAGCCGCGTCACGTTATCAAAGTTTTCAGCGGCCTTCACATCACCGCCATTACGCTCTACCGCTTGCTGAATCATCTGCTGGAAGTTCATCCCTTCCATGCGCGTGTCGGTCATTT > minE/1348715‑1348855 | aCGTCAAATCGGTGGTAAAGCGGTCAAGCCGCGTCACGTTATCAAAGTTTTCAGCGGCCTTCACATCACCg > 1:2110636/1‑71 (MQ=255)aCGTCAAATCGGTGGTAAAGCGGTCAAGCCGCGTCACGTTATCAAAGTTTTCAGCGGCCTTCACATCACCg > 1:1796630/1‑71 (MQ=255) cGTCAAATCGGTGGTAAAGCGGTCAAGCCGCGTCACGTTATCAAAGTTTTCAGCGGCCTTCACATCACCGc < 1:4700845/71‑1 (MQ=255) aaaTCGGTGGTAAAGCGGTCAAGCCGCGTCACGTTATCAAAGTTTTCAGCGGCCTTCACATCACCGCCAtt < 1:1582330/71‑1 (MQ=255) aTCGGTGGTAAAGCGGTCAAGCCGCGTCACGTTATCAAAGTTTTCAGCGGCCTTCACATCACCGCCATTAc < 1:704891/71‑1 (MQ=255) aTCGGTGGTAAAGCGGTCAAGCCGCGTCACGTTATCAAAGTTTTCAGCGGCCTTCACATCACCGCCATTAc < 1:1960791/71‑1 (MQ=255) tCGGTGGTAAAGCGGTCAAGCCGCGTCACGTTATCAAAGTTTTCAGCGGCCTTCACATCACCGCCATTACg < 1:3213119/71‑1 (MQ=255) ggtggtAAAGCGGTCAAGCCGCGTCACGTTATCAAAGTTTTCAGCGGCCTTCACATCACCGCCATTACGct > 1:4075495/1‑71 (MQ=255) ggtggtAAAGCGGTCAAGCCGCGTCACGTTATCAAAGTTTTCAGCGGCCTTCACATCACCGCCATTACGc < 1:780988/70‑1 (MQ=255) ggtggtAAAGCGGTCAAGCCGCGTCACGTTATCAAAGTTTTCAGCGGCATTCACATCACCGCCATTACGc < 1:3036534/70‑1 (MQ=255) ggtAAAGCGGTCAAGCCGCGTCACGTTATCAAAGTTTTCAGCGGCCTTCACATCACCGCCATTACGc < 1:2467160/67‑1 (MQ=255) gtAAAGCGGTCAAGCCGCGTCACGTTATCAAAGTTTTCAGCGGCCTTCACATCACCGCCATTACGCTCTa < 1:4681218/70‑1 (MQ=255) tAAAGCGGTCAAGCCGCGTCACGTTATCAAAGTTTTCAGCGGCCTTCACATCACCGCCATTACGCTCTAcc < 1:1829083/71‑1 (MQ=255) tAAAGCGGTCAAGCCGCGTCACGTTATCAAAGTTTTCAGCGGCCTTCACATCACCGCCATTACGCTCTAcc < 1:2407015/71‑1 (MQ=255) tAAAGCGGTCAAGCCGCGTCACGTTATCAAAGTTTTCAGCGGCCTTCACATCACCGCCATTACGCTCTAcc < 1:2284809/71‑1 (MQ=255) aaaGCGGTCAAGCCGCGTCACGTTATCAAAGTTTTCAGCGGCCTTCACATCACCGCCATTACGCTCTACCg > 1:3377881/1‑71 (MQ=255) aaGCGGTCAAGCCGCGTCACGTTATCAAAGTTTTCAGCGGCCTTCACATCACCGCCATTACGCTCTACCg < 1:1431930/70‑1 (MQ=255) aaGCGGTCAAGCCGCGTCACGTTATCAAAGTTTTCAGCGGCCTTCACATCACCGCCATTACGCTCTACCGc < 1:3691173/71‑1 (MQ=255) gCGGTCAAGCCGCGTCACGTTATCAAAGTTTTCAGCGGCCTTCACATCACCGCCATTACGCTCTACCGCtt < 1:185030/71‑1 (MQ=255) cGGTCAAGCCGCGTCACGTTATCAAAGTTTTCAGCGGCCTTCACATCACCGCCATTACGCTCTACCGCTTg > 1:2056013/1‑71 (MQ=255) cGGTCAAGCCGCGTCACGTTATCAAAGTTTTCAGCGGCCTTCACATCACCGCCATTACGCTCTACCGCTTg > 1:160660/1‑71 (MQ=255) gTCAAGCCGCGTCACGTTATCAAAGTTTTCAGCGGCCTTCACATCACCGCCATTACGCTCTACCGCTTGCt < 1:3701379/71‑1 (MQ=255) tCAAGCCGCGTCACGTTATCAAAGTTTTCAGCGGCCTTCACATCACCGCCATTACGCTCTACCGCTTGCTg < 1:225310/71‑1 (MQ=255) tCAAGCCGCGTCACGTTATCAAAGTTTTCAGCGGCCTTCACATCACCGCCATTACGCTCTACCGCTTGCTg < 1:1735575/71‑1 (MQ=255) cAAGCCGCGTCACGTTATCAAAGTTTTCAGCGGCCTTCACATCACCGCCATTACGCTCTACCGCTTGCTg > 1:2051674/1‑70 (MQ=255) cAAGCCGCGTCACGTTATCAAAGTTTTCAGCGGCCTTCACATCACCGCCATTACGCTCTACCGCTTGCTg > 1:1257112/1‑70 (MQ=255) aaGCCGCGTCACGTTATCAAAGTTTTCAGCGGCCTTCACATCACCGCCATTACGCTCTACCGCTTGCTGaa > 1:2742971/1‑71 (MQ=255) aaGCCGCGTCACGTTATCAAAGTTTTCAGCGGCCTTCACATCACCGCCATTACGCTCTACCGCTTGCTGaa < 1:3360250/71‑1 (MQ=255) aaGCCGCGTCACGTTATCAAAGTTTTCAGCGGCCTTCACATCACCGCCATTACGCTCTACCGCTTGCTGa < 1:2288984/70‑1 (MQ=255) aaGCCGCGTCACGTTATCAAAGTTTTCAGCGGCCTTCACATCACCGCCATTACGCTCTACCGCTTGCTGa < 1:2057547/70‑1 (MQ=255) gacgcgTCACGTTATCGAAGTTTTCAGCGGCCTTCACATCACCACCATTACGTTCTACCGCTTGCTGAat > 1:3094322/3‑70 (MQ=255) ccGCGTCACGTTATCAAAGTTTTCAGCGGCCTTCACATCACCGCCATTACGCTCTACCGCTTGCTGAatca > 1:305610/1‑71 (MQ=255) ccGCGTCACGTTATCAAAGTTTTCAGCGGCCTTCACATCACCGCCATTACGCTCTACCGCTTGCTGAatca < 1:761045/71‑1 (MQ=255) ccGCGTAACGTTATCAAAGTTTTCAGCGGCCTTCACATCACCGCCATTACGct > 1:1499813/1‑53 (MQ=255) cgtgTCACGTTATCAAAGTTTTCAGCGGCCTTCACATCACCGCCATTACGCTCTACCGCTTGCTGAatcat < 1:348203/68‑1 (MQ=255) cgcgTCACGTTATCAAAGTTTTCAGCGGCCTTCACATCACCGCCAt < 1:169994/46‑1 (MQ=255) cgcgTCACGTTATCAAAGTTTTCAGCGGCCTTCACATCACCGCCATTACGCTCTACCGCTTGCTGAatcat < 1:3307714/71‑1 (MQ=255) gcgTCACGTTATCAAAGTTTTCAGCGGCCTTCACATCACCGCCATTa > 1:2616521/1‑47 (MQ=255) gcgTCACGTTATCAAAGTTTTAAGCGGCCTTCACATCACCGCCATTa > 1:2152784/1‑47 (MQ=255) gTCACGTTATCAAAGTTTTCAGCGGCCTTCACATCACCGCCATTACGCTCTACCGCTTGCTGAATCATctg > 1:2010240/1‑71 (MQ=255) tCACGTTATCAAAGTTTTCAGCTGCCTTCACATCACCGCCATTACGCTCTACCGCTTGCTGAATCAActgc > 1:4386372/1‑71 (MQ=255) tCACGTTATCAAAGTTTTCAGCGGCCTTCACATCACCGCCATTACGctct > 1:325241/1‑50 (MQ=255) tCACGTTATCAAAGTTTTCAGCGGCCTTCACATCACCGCCATTACGctct > 1:915819/1‑50 (MQ=255) tCACGTTATCAAAGTTTTCAGCGGCCTTCACATCACCGCCATTACGCTCTACCGCTTGCTGAATCATctgc > 1:132030/1‑71 (MQ=255) cACGTTATCAAAGTTTTCAGCGGCCTTCACATCACCGCCATTACGCTCTACCGCTTGCTGAATCATctgct > 1:412818/1‑71 (MQ=255) aCGTTATCAAAGTTTTCAGCGGCCTTCACATCACCGCCATTACGCTCTACCGc > 1:4036942/1‑53 (MQ=255) aCGTTATCAAAGTTTTCAGCGGCCTTCACATCACCGCCATTACGCTCTACCGCTTGCTGAATCATctgctg > 1:3648723/1‑71 (MQ=255) aCGTTATCAAAGTTTTCAGCGGCCTTCACATCACCGCCATTACGCTCTACCGCTTGCTGAATCATctgctg > 1:966731/1‑71 (MQ=255) aCGTTATCAAAGTTTTCAGCGGCCTTCACATCACCGCCATTACGCTCTACCGCTTGCTGAATCATctgctg > 1:2674620/1‑71 (MQ=255) aCGTTATCAAAGTTTTCAGCGGCCTTCACATCACCGCCATTACGCTCTACCGCTTGCTGAATCATctgctg > 1:2449717/1‑71 (MQ=255) aCGTTATCAAAGTTTTCAGCGGCCTTCACATAACCGCCATTACGCTCTACCGCTTGCTGAATCATctgctg > 1:2553721/1‑71 (MQ=255) cGTTATCAAAGTTTTCAGCGGCCTTCACATCACCGCCATTACGCTCTACCGCTTGCTGAatc < 1:79890/62‑1 (MQ=255) cGTTATCAAAGTTTTCAGCGGCCTTCACATCACCGCCATTACGCTCTACCGCTTGCTGAATCATTTGCTgg < 1:599466/71‑1 (MQ=255) cGTTATCAAAGTTTTCAGCGGCCTTCACATCACCGCCATTACGCTCTACCGCTTGCTGAATCATCTGCTgg < 1:4284317/71‑1 (MQ=255) cGTTATCAAAGTTTTCAGCGGCCTTCACATCACCGCCATTACGCTCTACCGCTTGCTGAATCATCTGCTgg < 1:95345/71‑1 (MQ=255) cGTTATCAAAGTTTTCAGCGGCCTTCACATCACCGCCATTACGCTCTACCGCTTGCTGAATCATCTGCTgg < 1:2454591/71‑1 (MQ=255) gTTATCGAAGTTTTCAGCGGCCTTCACATCACCACCAt < 1:2325476/38‑1 (MQ=38) gTTATCGAAGTTTTCAGCGGCCTTCACATCACCACCAt < 1:1361952/38‑1 (MQ=38) gTTATCAAAGTTTTCAGCGGCCTTCACATCACCGCCATTACGCTCTACCGCTTGCTGAATCATCTGCTGGa < 1:1931542/71‑1 (MQ=255) aTCGAAGTTTTCAGCGGCCTTCACATCACCACCAt < 1:2450938/35‑1 (MQ=37) aTCAAAGTTTTCAGCGGCCTTCACATCACCGCCATTACGct > 1:4500732/1‑41 (MQ=255) aTCAAAGTTTTCAGCGGCCTTCACATCACCGCCATTACGCTCTACCGCTTGCTGAATCATCTGCTGGAAg < 1:3917392/70‑1 (MQ=255) aTCAAAGTTTTCAGCGGCCTTCACATCACCGCCATTACGCTCTACCGCTTGCTGAATCATCTGCTGGAAGt > 1:4204288/1‑71 (MQ=255) tCAAAGTTTTCAGCGGCCTTCACATCACCGCCATTACGCTCTACCGCTTGCTGAATCATCTGCTGGAAGt < 1:992566/70‑1 (MQ=255) aaaGTTTTCAGCGGCCTTCACATCACCGCCATTACGCTCTACCGCTTGCTGAATCATCTGCTgg < 1:3149021/64‑1 (MQ=255) aaaGTTTTCAGCGGCCTTCACATCACCGCCATTACGCTCTACCGCTTGCTGAATCATCTGCTgg < 1:2613834/64‑1 (MQ=255) aaaGTTTTCAGCGGCCTTCACATCACCGCCATTACGCTCTACCGCTTGCTGAATCATCTGCTGGAAGTTc > 1:4221990/1‑70 (MQ=255) aaaGTTTTCAGCGGCCTTCACATCACAGCCATTACGCTCTACCGCTTGCTGAATTATCTGCTGGAAGTTCa > 1:3242378/1‑71 (MQ=255) ttCAGCGGCCTTCACATCACCGCCATTACGCTCTACCGCTTGCTGAatcat > 1:3588685/1‑51 (MQ=255) ttCAGCGGCCTTCACATCACCGCCATTACGCTCTACCGCTTGCTGAATCATCTGCTGGAAGTTCATCCCtt > 1:3126541/1‑71 (MQ=255) ttCAGCGGCCTTCACATCACCGCCATTACGCTCTACCGCTTGCTGAATCATCTGCTGGAAGTTCATCCCt < 1:2101036/70‑1 (MQ=255) cAGCGGCCTTCACATCACCGCCATTACGCTCTACCGCTTGCTGAATCATCTGCTGGAAGTTCATCCCTTc < 1:3923694/70‑1 (MQ=255) cGGCCTTCACATCACCGCCATTACGCTCTACCGCTTGCTGAATCATCTGCTGGAAGtt > 1:3473936/1‑58 (MQ=255) cGGCCTTCACATCACCACCATTACGTTCTACCGCTTGCTGAATCATCTGCTGGAAGTTCATCCCTTcc > 1:4570850/1‑68 (MQ=255) cGGCCTTCACATCACCACCATTACGTTCTACCGCTTGCTGAATCATCTGCTGGAAGTTCATCCCTTcc > 1:2136846/1‑68 (MQ=255) ggCCTTCACATCACCGCCATTACGCTCCACCGCTTGCTGAATCATCTGCTGGAAGTTCATCCCTTCCATgc < 1:763002/71‑1 (MQ=255) cTTCACATCACCGCCATTACGCTCTACCGCTTGCTGAATCATCTGCTGGAAGtt < 1:3679420/54‑1 (MQ=255) ttCACATCACCGCCATTACGCTCTACCGCTTGCTGAatc < 1:2799540/39‑1 (MQ=255) ttCACATCACCGCCATTACGCTCTACCGCTTGCTGAatc < 1:198899/39‑1 (MQ=255) ttCACATCACCGCCATTACGCTCTACCGCTTGCTGAATCATCTGCTGGAAGTTCATccttc < 1:2980309/61‑4 (MQ=255) ttCACATCACCGCCATTACGCTCTACCGCTTGCTGAATCATCTGCTGGAAGTTCATCCCTTc < 1:4212062/62‑1 (MQ=255) tCACATCACCGCCATTACGCTCTACCGCTTGCTGAATCATCTGCTGGAAGTTCATCCCTTCCATGCGCgtg > 1:3586270/1‑71 (MQ=255) cacaTCACCGCCATTACGCTCTACCGCTTGCTGAATCATCTGCTGGAAGTTCATCCCTTc < 1:2745439/60‑1 (MQ=255) cacaTCACCGCCATTACGCTCTACCGCTTGCTGAATCATCTGCTGGAAGTTCATCCCTTCCa > 1:2732158/1‑62 (MQ=255) cacaTCACCGCCATTACGCTCTACCGCTTGCTGAATCATCTGCTGGAAGTTCATCCCTTCCATGCGCgtgt > 1:4319538/1‑71 (MQ=255) cacaTCACCGCCATTACGCTCTACCGCTTGCTGAATCATCTGCTGGAAGTTCATCCCTTCCATGCGCgtgt > 1:1745426/1‑71 (MQ=255) cacaTCACCGCCATTACGCTCTACCGCTTGCTGAATCATCTGCTGGAAGTTCATCCCTTCCATGCGCgtgt > 1:2838123/1‑71 (MQ=255) cacaTCACCGCCATTACGCTCTACCGCTTGCTGAATCATCTGCTGGAAGTTCATCCCTTCCATGCGCgtgt > 1:3069216/1‑71 (MQ=255) cacaTCACCGCCATTACGCTCTACCGCTTGCTGAATCATCTGCTGGAAGTTCATCCCTTCCATGCGCgtgt > 1:3384607/1‑71 (MQ=255) cacaTCACCGCCATTACGCTCTACCGCTTGCTGAATCATCTGCTGGAAGTTCATCCCTTCCATGCGCgtgt > 1:3958648/1‑71 (MQ=255) acaTCACCGCCATTACGCTCTACCGCTTGCTGAATCATCTGCTGGa > 1:2575316/1‑46 (MQ=255) tCACCGCCATTACGCTCTACCGCTTGCTGAATCATCTGCTGGAAGTTCATCCCTTCCa > 1:4461697/1‑58 (MQ=255) tCACCGCCATTACGCTCTACCGCTTGCTGAATCATCTGCTGGAAGTTCATCCCTTCCATGCGCGTGTCGGt > 1:3474911/1‑71 (MQ=255) tCACCGCCATTACGCTCTACCGCTTGCTGAATCATCTGCTGGAAGTTCATCCCTTCCATGCGCGTGTCGGt < 1:3585389/71‑1 (MQ=255) tCACCGCCATTACGCTCTACCGCTTGCTGAATCATATGCTGGAAGTTCATc < 1:3640661/51‑1 (MQ=255) tCACCGCCATTACGCTCTACCGCTTGCTGAATAATCTGCTGGAAGTTCATCCCTTCCATGCGCGTGTCGGt > 1:3987175/1‑71 (MQ=255) aCCGCCATTACGCTCTACCGCTTGCTGAATCATCTGCTGGAAGTTCATCCCTTCCATGCGCGTGTCGGTc < 1:4456123/70‑1 (MQ=255) aCCGCCATTACGCTCTACCGCTTGCTGAATCATCTGCTGGAAGTTCATCCCTTCCATGCGCGTGTCGGTCa > 1:279528/1‑71 (MQ=255) gCCATTACGCTCTACCGCTTGCTGAATCATCTGCTGGa < 1:2219078/38‑1 (MQ=255) gCCATTACGCTCTACCGCTTGCTGAATCATCTGCTGGAAGTTCATCCCTTCCATGCGCGTGTCGGTCAttt < 1:3605468/71‑1 (MQ=255) | ACGTCAAATCGGTGGTAAAGCGGTCAAGCCGCGTCACGTTATCAAAGTTTTCAGCGGCCTTCACATCACCGCCATTACGCTCTACCGCTTGCTGAATCATCTGCTGGAAGTTCATCCCTTCCATGCGCGTGTCGGTCATTT > minE/1348715‑1348855 |
| Alignment Legend |
|---|
Aligned base mismatch/match (shaded by quality score): ATCG/ATCG < 3 ≤ ATCG/ATCG < 32 ≤ ATCG/ATCG < 33 ≤ ATCG/ATCG < 36 ≤ ATCG/ATCG |
Unaligned base: atcg Masked matching base: atcg Alignment gap: ‑ Deleted base: ‑ |